Wall clock time and date at job start Mon Mar 8 2021 09:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00214 * 2 1 4 4 C 1.53003 * 112.84831 * 66.01539 * 3 2 1 5 5 F 1.39899 * 109.47289 * 283.56568 * 4 3 2 6 6 F 1.39904 * 109.46712 * 43.57007 * 4 3 2 7 7 F 1.39908 * 109.46837 * 163.56416 * 4 3 2 8 8 C 1.53778 * 113.61202 * 294.82322 * 3 2 1 9 9 C 1.53777 * 87.08337 * 270.79709 * 8 3 2 10 10 H 1.08999 * 113.62328 * 219.93997 * 9 8 3 11 11 C 1.53005 * 113.61156 * 89.11363 * 9 8 3 12 12 N 1.46501 * 109.46851 * 175.00277 * 11 9 8 13 13 C 1.38614 * 120.00029 * 180.02562 * 12 11 9 14 14 N 1.29689 * 124.94538 * 359.70291 * 13 12 11 15 15 C 1.32122 * 116.86315 * 179.81380 * 14 13 12 16 16 C 1.33323 * 114.57920 * 0.46689 * 15 14 13 17 17 C 1.50703 * 125.95112 * 179.75516 * 16 15 14 18 18 O 1.42894 * 109.47046 * 65.02733 * 17 16 15 19 19 Si 1.86308 * 109.46899 * 185.02456 * 17 16 15 20 20 S 1.70962 * 124.95071 * 180.02562 * 13 12 11 21 21 C 1.53784 * 87.08320 * 334.56993 * 9 8 3 22 22 H 1.09002 * 109.46851 * 62.48271 * 1 2 3 23 23 H 1.08998 * 109.47197 * 182.48138 * 1 2 3 24 24 H 1.09003 * 109.46834 * 302.48444 * 1 2 3 25 25 H 1.09009 * 113.61190 * 156.25390 * 8 3 2 26 26 H 1.09000 * 113.69637 * 25.35870 * 8 3 2 27 27 H 1.08995 * 109.47260 * 295.00487 * 11 9 8 28 28 H 1.09002 * 109.47068 * 55.00940 * 11 9 8 29 29 H 0.97001 * 120.00339 * 0.02562 * 12 11 9 30 30 H 1.07997 * 122.70984 * 180.22514 * 15 14 13 31 31 H 1.08995 * 109.47267 * 305.02419 * 17 16 15 32 32 H 0.96700 * 114.00120 * 180.02562 * 18 17 16 33 33 H 1.48499 * 110.00208 * 299.99748 * 19 17 16 34 34 H 1.48496 * 109.99850 * 61.31936 * 19 17 16 35 35 H 1.08997 * 113.61740 * 139.97395 * 21 9 8 36 36 H 1.09001 * 113.61622 * 270.88599 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7284 2.0813 1.2882 5 9 0.4117 2.5537 1.2695 6 9 1.9053 1.2366 2.3894 7 9 2.6107 3.1629 1.3837 8 6 1.7205 2.1087 -1.2789 9 6 2.9972 1.4845 -1.8662 10 1 3.5925 2.1813 -2.4563 11 6 2.7553 0.1547 -2.5832 12 7 4.0014 -0.2975 -3.2069 13 6 4.0285 -1.4868 -3.9184 14 7 3.0123 -2.2746 -4.0875 15 6 3.2171 -3.3688 -4.7992 16 6 4.4655 -3.5159 -5.2433 17 6 4.9807 -4.6655 -6.0704 18 8 4.3346 -4.6624 -7.3450 19 14 6.8200 -4.4858 -6.3061 20 16 5.4083 -2.1327 -4.6943 21 6 3.4900 1.3229 -0.4185 22 1 -0.3633 0.4748 -0.9114 23 1 -0.3633 -1.0267 0.0445 24 1 -0.3633 0.5520 0.8669 25 1 1.7859 3.1881 -1.1407 26 1 0.8088 1.8021 -1.7916 27 1 2.4183 -0.5905 -1.8627 28 1 1.9929 0.2890 -3.3505 29 1 4.8075 0.2353 -3.1221 30 1 2.4372 -4.0879 -5.0014 31 1 4.7701 -5.6045 -5.5586 32 1 4.6180 -5.3772 -7.9313 33 1 7.1205 -3.2094 -7.0031 34 1 7.5064 -4.5195 -4.9898 35 1 4.0066 0.3808 -0.2356 36 1 4.0391 2.1874 -0.0451 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17317798_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:41:28 Heat of formation + Delta-G solvation = -134.045865 kcal Electronic energy + Delta-G solvation = -25936.054889 eV Core-core repulsion = 21521.640343 eV Total energy + Delta-G solvation = -4414.414546 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.28518 -48.81862 -48.75716 -41.56745 -40.69935 -38.03285 -37.49591 -36.10646 -31.83120 -30.18292 -28.22229 -27.54162 -26.81738 -26.18272 -24.32976 -23.38358 -20.95291 -20.77936 -19.78628 -19.63253 -19.56744 -19.06372 -18.40528 -17.62285 -17.22154 -16.66733 -16.48208 -16.24343 -15.86764 -15.68794 -15.68116 -15.59554 -15.47675 -15.22473 -15.07522 -14.92686 -14.79376 -14.57527 -14.39937 -14.30258 -14.03171 -13.28556 -13.11664 -12.88500 -12.68996 -12.53990 -12.27723 -12.14112 -12.05029 -11.65792 -11.33403 -10.84479 -10.73307 -10.40231 -10.21769 -8.83300 -5.17528 -0.17378 -0.03825 0.52703 1.25327 1.51284 1.58581 1.87660 1.93583 2.03664 2.09097 2.55112 2.61613 2.86921 3.27936 3.28153 3.43652 3.54951 3.61677 3.72785 3.99385 4.22188 4.24529 4.32223 4.42196 4.48104 4.49120 4.60992 4.63301 4.65850 4.71077 4.79086 4.81313 4.93502 5.11970 5.70038 5.71798 6.05113 6.87277 6.94249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.345 6.345 3 C 0.034 3.966 4 C 0.432 3.568 5 F -0.185 7.185 6 F -0.189 7.189 7 F -0.175 7.175 8 C -0.135 4.135 9 C -0.102 4.102 10 H 0.124 0.876 11 C 0.149 3.851 12 N -0.681 5.681 13 C 0.327 3.673 14 N -0.572 5.572 15 C 0.110 3.890 16 C -0.275 4.275 17 C -0.024 4.024 18 O -0.564 6.564 19 Si 0.756 3.244 20 S 0.054 5.946 21 C -0.113 4.113 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.123 0.877 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.425 0.575 30 H 0.189 0.811 31 H 0.106 0.894 32 H 0.405 0.595 33 H -0.283 1.283 34 H -0.276 1.276 35 H 0.090 0.910 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 -1.156 -3.207 3.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.263 6.263 3 C -0.008 4.008 4 C 0.377 3.623 5 F -0.167 7.167 6 F -0.171 7.171 7 F -0.157 7.157 8 C -0.173 4.173 9 C -0.121 4.121 10 H 0.142 0.858 11 C 0.024 3.976 12 N -0.321 5.321 13 C -0.044 4.044 14 N -0.298 5.298 15 C -0.040 4.040 16 C -0.397 4.397 17 C -0.137 4.137 18 O -0.374 6.374 19 Si 0.660 3.340 20 S 0.302 5.698 21 C -0.150 4.150 22 H 0.087 0.913 23 H 0.125 0.875 24 H 0.065 0.935 25 H 0.141 0.859 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.264 0.736 30 H 0.206 0.794 31 H 0.123 0.877 32 H 0.256 0.744 33 H -0.210 1.210 34 H -0.202 1.202 35 H 0.108 0.892 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.922 0.204 -2.523 3.866 hybrid contribution -1.292 0.100 0.775 1.511 sum 1.630 0.304 -1.747 2.409 Atomic orbital electron populations 1.23232 0.78916 1.04906 1.01782 1.88093 1.21900 1.22511 1.93813 1.24203 1.00834 0.86256 0.89529 1.21575 0.74107 0.78706 0.87895 1.93175 1.37256 1.89387 1.96846 1.93187 1.95010 1.71119 1.57751 1.93170 1.68821 1.57076 1.96612 1.23612 1.00054 1.01392 0.92276 1.22318 0.98025 0.96507 0.95227 0.85820 1.21309 0.85001 0.95008 0.96289 1.44069 1.14320 1.18685 1.55072 1.23963 0.92473 0.92441 0.95504 1.66485 1.30163 1.07543 1.25654 1.21594 0.95710 0.93891 0.92781 1.24656 0.97019 1.03048 1.14966 1.23850 1.08288 0.95872 0.85650 1.86467 1.68266 1.57288 1.25369 0.94217 0.73488 0.84589 0.81726 1.84087 1.14509 1.18989 1.52223 1.23371 0.90469 1.05721 0.95458 0.91342 0.87496 0.93482 0.85865 0.88131 0.90827 0.91607 0.73597 0.79420 0.87682 0.74370 1.20997 1.20221 0.89172 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.35 -0.67 8.36 -148.98 -1.25 -1.92 16 3 C 0.03 -0.04 0.85 -10.27 -0.01 -0.05 16 4 C 0.43 1.04 2.51 71.98 0.18 1.22 16 5 F -0.19 -0.60 15.24 44.97 0.69 0.08 16 6 F -0.19 -1.29 17.09 44.97 0.77 -0.52 16 7 F -0.18 -0.31 15.82 44.97 0.71 0.40 16 8 C -0.14 0.80 6.52 31.12 0.20 1.01 16 9 C -0.10 0.67 3.94 -10.27 -0.04 0.63 16 10 H 0.12 -1.31 8.14 -2.39 -0.02 -1.33 16 11 C 0.15 -0.19 5.53 86.38 0.48 0.29 16 12 N -0.68 -0.01 5.71 -351.00 -2.01 -2.02 16 13 C 0.33 2.05 8.09 179.32 1.45 3.50 16 14 N -0.57 -5.44 10.14 -202.03 -2.05 -7.49 16 15 C 0.11 0.83 11.24 83.54 0.94 1.77 16 16 C -0.27 -1.72 5.76 24.57 0.14 -1.58 16 17 C -0.02 0.00 2.98 71.24 0.21 0.21 16 18 O -0.56 0.10 12.86 -148.98 -1.92 -1.82 16 19 Si 0.76 -0.99 31.07 68.60 2.13 1.15 16 20 S 0.05 0.33 20.59 -56.49 -1.16 -0.84 16 21 C -0.11 0.53 6.89 31.12 0.21 0.74 16 22 H 0.07 -0.28 6.76 -2.39 -0.02 -0.30 16 23 H 0.11 -0.29 8.14 -2.39 -0.02 -0.30 16 24 H 0.05 0.00 6.25 -2.39 -0.01 -0.01 16 25 H 0.12 -1.02 8.06 -2.38 -0.02 -1.04 16 26 H 0.10 -0.65 6.70 -2.39 -0.02 -0.67 16 27 H 0.07 0.22 6.12 -2.39 -0.01 0.21 16 28 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.42 -2.13 8.60 -92.71 -0.80 -2.92 16 30 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.11 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.40 -4.52 8.74 -74.06 -0.65 -5.17 16 33 H -0.28 -1.71 7.11 99.48 0.71 -1.01 16 34 H -0.28 -1.11 7.11 99.48 0.71 -0.40 16 35 H 0.09 -0.25 8.10 -2.39 -0.02 -0.27 16 36 H 0.13 -0.92 7.01 -2.39 -0.02 -0.94 16 Total: 0.00 -18.65 322.62 0.62 -18.03 By element: Atomic # 1 Polarization: -13.73 SS G_CDS: -0.25 Total: -13.98 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.95 Total: 8.91 kcal Atomic # 7 Polarization: -5.45 SS G_CDS: -4.05 Total: -9.51 kcal Atomic # 8 Polarization: -0.57 SS G_CDS: -3.16 Total: -3.73 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 2.17 Total: -0.04 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.13 Total: 1.15 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.16 Total: -0.84 kcal Total: -18.65 0.62 -18.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17317798_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.019 kcal (2) G-P(sol) polarization free energy of solvation -18.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds