Wall clock time and date at job start Mon Mar 8 2021 09:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99699 * 2 1 4 4 C 1.52999 * 112.84761 * 290.83511 * 3 2 1 5 5 F 1.39901 * 109.47231 * 65.46449 * 4 3 2 6 6 F 1.39900 * 109.46915 * 185.46469 * 4 3 2 7 7 F 1.39899 * 109.46958 * 305.46266 * 4 3 2 8 8 C 1.53789 * 113.61279 * 159.53048 * 3 2 1 9 9 C 1.53783 * 87.07853 * 270.87990 * 8 3 2 10 10 H 1.08998 * 113.68699 * 220.00413 * 9 8 3 11 11 C 1.52998 * 113.61255 * 89.11830 * 9 8 3 12 12 N 1.46504 * 109.47031 * 87.49716 * 11 9 8 13 13 C 1.38617 * 119.99976 * 179.97438 * 12 11 9 14 14 N 1.29683 * 124.95042 * 179.97438 * 13 12 11 15 15 C 1.32121 * 116.86879 * 179.97438 * 14 13 12 16 16 C 1.50693 * 122.71347 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47367 * 293.66156 * 16 15 14 18 18 Si 1.86305 * 109.46990 * 53.65969 * 16 15 14 19 19 C 1.33331 * 114.57697 * 0.02562 * 15 14 13 20 20 C 1.50700 * 125.95044 * 179.97438 * 19 15 14 21 21 S 1.70963 * 124.94584 * 359.69939 * 13 12 11 22 22 C 1.53774 * 87.08283 * 334.56881 * 9 8 3 23 23 H 1.08996 * 109.47384 * 66.76847 * 1 2 3 24 24 H 1.08999 * 109.47518 * 306.76451 * 1 2 3 25 25 H 1.09005 * 109.46994 * 186.76801 * 1 2 3 26 26 H 1.08993 * 113.61171 * 25.43194 * 8 3 2 27 27 H 1.08998 * 113.61102 * 156.33097 * 8 3 2 28 28 H 1.08996 * 109.47144 * 207.49839 * 11 9 8 29 29 H 1.09004 * 109.47154 * 327.49940 * 11 9 8 30 30 H 0.96998 * 120.00267 * 0.02562 * 12 11 9 31 31 H 1.09000 * 109.47342 * 173.65604 * 16 15 14 32 32 H 0.96703 * 114.00442 * 59.99285 * 17 16 15 33 33 H 1.48498 * 109.99914 * 58.68023 * 18 16 15 34 34 H 1.48501 * 109.99980 * 180.02562 * 18 16 15 35 35 H 1.09004 * 109.47062 * 84.64984 * 20 19 15 36 36 H 1.09003 * 109.46899 * 204.65111 * 20 19 15 37 37 H 1.08994 * 109.47077 * 324.64501 * 20 19 15 38 38 H 1.09003 * 113.61689 * 270.88411 * 22 9 8 39 39 H 1.09006 * 113.61304 * 139.98153 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7936 2.0522 -1.3178 5 9 0.4287 2.3055 -1.4914 6 9 2.4926 3.2636 -1.2876 7 9 2.2615 1.2701 -2.3792 8 6 3.4667 1.3314 0.4928 9 6 2.9012 1.5251 1.9097 10 1 3.4668 2.2344 2.5137 11 6 2.6208 0.2116 2.6425 12 7 3.8328 -0.2274 3.3386 13 6 3.8216 -1.4008 4.0766 14 7 4.8361 -1.8783 4.7282 15 6 4.6471 -3.0117 5.3804 16 6 5.7342 -3.6823 6.1799 17 8 6.7658 -4.1311 5.2988 18 14 6.4455 -2.4685 7.4013 19 6 3.4167 -3.5142 5.2738 20 6 2.9234 -4.7885 5.9094 21 16 2.4665 -2.4258 4.2658 22 6 1.6571 2.1370 1.2445 23 1 -0.3634 0.4053 -0.9443 24 1 -0.3634 0.6151 0.8232 25 1 -0.3633 -1.0206 0.1211 26 1 3.9903 0.3851 0.3572 27 1 4.0356 2.1870 0.1289 28 1 1.8206 0.3633 3.3668 29 1 2.3197 -0.5492 1.9223 30 1 4.6429 0.3032 3.2838 31 1 5.3177 -4.5351 6.7159 32 1 7.1824 -3.4235 4.7880 33 1 5.3763 -1.9701 8.3033 34 1 7.5192 -3.1175 8.1957 35 1 2.6046 -4.5849 6.9317 36 1 2.0814 -5.1777 5.3369 37 1 3.7272 -5.5245 5.9191 38 1 1.7312 3.2129 1.0861 39 1 0.7198 1.8411 1.7158 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17317798_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:41:31 Heat of formation + Delta-G solvation = -142.797449 kcal Electronic energy + Delta-G solvation = -28066.518679 eV Core-core repulsion = 23496.187017 eV Total energy + Delta-G solvation = -4570.331663 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.22180 -48.77817 -48.65302 -41.76460 -40.91871 -38.11709 -37.34366 -36.21165 -33.25656 -30.43605 -28.96645 -28.31696 -27.11334 -26.88958 -25.56544 -24.17466 -23.57916 -21.24072 -20.16241 -19.86786 -19.52223 -19.31217 -18.97234 -17.82652 -17.59244 -17.28731 -16.74836 -16.61115 -16.30249 -15.97735 -15.82454 -15.58125 -15.47535 -15.32491 -15.17603 -15.06098 -14.84912 -14.81702 -14.63163 -14.29284 -14.08280 -14.00484 -13.93840 -13.55077 -13.45809 -13.24851 -12.89813 -12.79031 -12.53586 -12.32915 -12.25566 -11.84153 -11.76006 -11.17279 -10.88142 -10.60484 -10.36103 -9.94782 -8.63177 -4.81321 0.03407 0.19942 0.79838 1.36776 1.48577 1.76925 1.79515 1.91558 1.94818 2.11172 2.46221 2.55396 2.73620 3.05210 3.22815 3.30720 3.43995 3.49790 3.71971 3.94160 4.00091 4.05717 4.10540 4.17887 4.21038 4.22732 4.28680 4.39020 4.45849 4.46651 4.56191 4.58998 4.62439 4.75270 4.90786 4.93827 5.20548 5.52279 5.54068 6.26554 6.64423 6.94717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.332 6.332 3 C 0.040 3.960 4 C 0.438 3.562 5 F -0.182 7.182 6 F -0.176 7.176 7 F -0.174 7.174 8 C -0.113 4.113 9 C -0.109 4.109 10 H 0.106 0.894 11 C 0.131 3.869 12 N -0.691 5.691 13 C 0.321 3.679 14 N -0.541 5.541 15 C 0.075 3.925 16 C -0.033 4.033 17 O -0.536 6.536 18 Si 0.709 3.291 19 C -0.249 4.249 20 C -0.072 4.072 21 S 0.105 5.895 22 C -0.144 4.144 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.413 0.587 31 H 0.118 0.882 32 H 0.383 0.617 33 H -0.261 1.261 34 H -0.252 1.252 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 3.112 0.447 3.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.249 6.249 3 C -0.002 4.002 4 C 0.383 3.617 5 F -0.163 7.163 6 F -0.157 7.157 7 F -0.155 7.155 8 C -0.150 4.150 9 C -0.128 4.128 10 H 0.124 0.876 11 C 0.007 3.993 12 N -0.333 5.333 13 C -0.051 4.051 14 N -0.268 5.268 15 C -0.056 4.056 16 C -0.146 4.146 17 O -0.342 6.342 18 Si 0.610 3.390 19 C -0.372 4.372 20 C -0.132 4.132 21 S 0.353 5.647 22 C -0.182 4.182 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.252 0.748 31 H 0.136 0.864 32 H 0.230 0.770 33 H -0.186 1.186 34 H -0.177 1.177 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.993 2.941 1.028 4.321 hybrid contribution 0.065 -0.124 -0.319 0.348 sum -2.929 2.818 0.709 4.125 Atomic orbital electron populations 1.23228 0.79358 1.04370 1.01959 1.88096 1.21287 1.21748 1.93813 1.23960 1.00170 0.86631 0.89461 1.21200 0.74058 0.78279 0.88154 1.93178 1.32433 1.94429 1.96261 1.93186 1.79061 1.46778 1.96685 1.93225 1.88309 1.74244 1.59725 1.23261 0.91615 1.05661 0.94495 1.22301 0.97816 0.96926 0.95762 0.87602 1.21509 0.86150 0.95929 0.95730 1.43808 1.15114 1.21490 1.52847 1.23204 0.93257 0.93037 0.95563 1.65950 1.29768 1.14395 1.16658 1.20060 0.94781 0.91489 0.99235 1.24724 0.87698 1.04421 0.97747 1.86467 1.50938 1.37942 1.58822 0.93809 0.82589 0.84581 0.78033 1.25084 0.96754 1.04843 1.10557 1.20188 1.01665 0.91556 0.99763 1.83951 1.14152 1.17208 1.49350 1.23614 0.99860 1.01099 0.93664 0.92346 0.92545 0.87993 0.88186 0.86644 0.91040 0.89235 0.74825 0.86440 0.76959 1.18579 1.17677 0.90959 0.91179 0.90244 0.86841 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.30 101.05 1.04 1.02 16 2 O -0.33 0.36 8.52 -35.23 -0.30 0.06 16 3 C 0.04 -0.08 0.79 -89.80 -0.07 -0.15 16 4 C 0.44 0.02 2.68 37.16 0.10 0.12 16 5 F -0.18 -0.11 14.97 2.25 0.03 -0.07 16 6 F -0.18 -0.01 15.72 2.25 0.04 0.03 16 7 F -0.17 -0.35 17.26 2.25 0.04 -0.31 16 8 C -0.11 0.38 6.92 -25.91 -0.18 0.20 16 9 C -0.11 0.49 3.94 -89.81 -0.35 0.14 16 10 H 0.11 -0.59 8.14 -51.93 -0.42 -1.02 16 11 C 0.13 -0.41 5.11 -4.04 -0.02 -0.43 16 12 N -0.69 1.18 5.71 -62.30 -0.36 0.82 16 13 C 0.32 0.34 8.24 -87.68 -0.72 -0.39 16 14 N -0.54 -1.19 9.77 -11.36 -0.11 -1.30 16 15 C 0.07 0.18 5.19 -84.18 -0.44 -0.25 16 16 C -0.03 -0.05 2.84 36.00 0.10 0.05 16 17 O -0.54 -1.20 12.88 -35.23 -0.45 -1.66 16 18 Si 0.71 0.74 32.62 -169.99 -5.55 -4.81 16 19 C -0.25 -0.50 6.57 -36.02 -0.24 -0.73 16 20 C -0.07 0.00 9.70 36.01 0.35 0.35 16 21 S 0.10 0.08 22.32 -107.50 -2.40 -2.32 16 22 C -0.14 0.60 6.62 -25.92 -0.17 0.43 16 23 H 0.06 -0.10 6.35 -51.93 -0.33 -0.43 16 24 H 0.06 -0.23 6.32 -51.93 -0.33 -0.56 16 25 H 0.10 -0.37 8.14 -51.93 -0.42 -0.80 16 26 H 0.10 -0.27 8.10 -51.93 -0.42 -0.69 16 27 H 0.12 -0.48 7.31 -51.93 -0.38 -0.86 16 28 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 29 H 0.09 -0.18 6.12 -51.93 -0.32 -0.50 16 30 H 0.41 -1.18 8.60 -40.82 -0.35 -1.53 16 31 H 0.12 0.12 6.34 -51.93 -0.33 -0.21 16 32 H 0.38 -0.21 8.70 45.56 0.40 0.19 16 33 H -0.26 -0.94 7.11 56.52 0.40 -0.54 16 34 H -0.25 -0.80 7.11 56.52 0.40 -0.40 16 35 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 36 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.08 -0.02 7.18 -51.93 -0.37 -0.39 16 38 H 0.11 -0.53 7.68 -51.93 -0.40 -0.93 16 39 H 0.10 -0.47 6.42 -51.93 -0.33 -0.80 16 LS Contribution 342.72 15.07 5.16 5.16 Total: 0.00 -6.16 342.72 -8.97 -15.13 By element: Atomic # 1 Polarization: -6.61 SS G_CDS: -4.48 Total: -11.09 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.60 Total: 0.35 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -0.47 Total: -0.48 kcal Atomic # 8 Polarization: -0.85 SS G_CDS: -0.75 Total: -1.60 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.11 Total: -0.36 kcal Atomic # 14 Polarization: 0.74 SS G_CDS: -5.55 Total: -4.81 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.40 Total: -2.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -6.16 -8.97 -15.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17317798_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.664 kcal (2) G-P(sol) polarization free energy of solvation -6.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds