Wall clock time and date at job start Mon Mar 8 2021 09:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99699 * 2 1 4 4 C 1.52999 * 112.84761 * 290.83511 * 3 2 1 5 5 F 1.39901 * 109.47231 * 65.46449 * 4 3 2 6 6 F 1.39900 * 109.46915 * 185.46469 * 4 3 2 7 7 F 1.39899 * 109.46958 * 305.46266 * 4 3 2 8 8 C 1.53789 * 113.61279 * 159.53048 * 3 2 1 9 9 C 1.53783 * 87.07853 * 270.87990 * 8 3 2 10 10 H 1.08998 * 113.68699 * 220.00413 * 9 8 3 11 11 C 1.52998 * 113.61255 * 89.11830 * 9 8 3 12 12 N 1.46504 * 109.47031 * 87.49716 * 11 9 8 13 13 C 1.38617 * 119.99976 * 179.97438 * 12 11 9 14 14 N 1.29683 * 124.95042 * 179.97438 * 13 12 11 15 15 C 1.32121 * 116.86879 * 179.97438 * 14 13 12 16 16 C 1.50693 * 122.71347 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47367 * 293.66156 * 16 15 14 18 18 Si 1.86305 * 109.46990 * 53.65969 * 16 15 14 19 19 C 1.33331 * 114.57697 * 0.02562 * 15 14 13 20 20 C 1.50700 * 125.95044 * 179.97438 * 19 15 14 21 21 S 1.70963 * 124.94584 * 359.69939 * 13 12 11 22 22 C 1.53774 * 87.08283 * 334.56881 * 9 8 3 23 23 H 1.08996 * 109.47384 * 66.76847 * 1 2 3 24 24 H 1.08999 * 109.47518 * 306.76451 * 1 2 3 25 25 H 1.09005 * 109.46994 * 186.76801 * 1 2 3 26 26 H 1.08993 * 113.61171 * 25.43194 * 8 3 2 27 27 H 1.08998 * 113.61102 * 156.33097 * 8 3 2 28 28 H 1.08996 * 109.47144 * 207.49839 * 11 9 8 29 29 H 1.09004 * 109.47154 * 327.49940 * 11 9 8 30 30 H 0.96998 * 120.00267 * 0.02562 * 12 11 9 31 31 H 1.09000 * 109.47342 * 173.65604 * 16 15 14 32 32 H 0.96703 * 114.00442 * 59.99285 * 17 16 15 33 33 H 1.48498 * 109.99914 * 58.68023 * 18 16 15 34 34 H 1.48501 * 109.99980 * 180.02562 * 18 16 15 35 35 H 1.09004 * 109.47062 * 84.64984 * 20 19 15 36 36 H 1.09003 * 109.46899 * 204.65111 * 20 19 15 37 37 H 1.08994 * 109.47077 * 324.64501 * 20 19 15 38 38 H 1.09003 * 113.61689 * 270.88411 * 22 9 8 39 39 H 1.09006 * 113.61304 * 139.98153 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7936 2.0522 -1.3178 5 9 0.4287 2.3055 -1.4914 6 9 2.4926 3.2636 -1.2876 7 9 2.2615 1.2701 -2.3792 8 6 3.4667 1.3314 0.4928 9 6 2.9012 1.5251 1.9097 10 1 3.4668 2.2344 2.5137 11 6 2.6208 0.2116 2.6425 12 7 3.8328 -0.2274 3.3386 13 6 3.8216 -1.4008 4.0766 14 7 4.8361 -1.8783 4.7282 15 6 4.6471 -3.0117 5.3804 16 6 5.7342 -3.6823 6.1799 17 8 6.7658 -4.1311 5.2988 18 14 6.4455 -2.4685 7.4013 19 6 3.4167 -3.5142 5.2738 20 6 2.9234 -4.7885 5.9094 21 16 2.4665 -2.4258 4.2658 22 6 1.6571 2.1370 1.2445 23 1 -0.3634 0.4053 -0.9443 24 1 -0.3634 0.6151 0.8232 25 1 -0.3633 -1.0206 0.1211 26 1 3.9903 0.3851 0.3572 27 1 4.0356 2.1870 0.1289 28 1 1.8206 0.3633 3.3668 29 1 2.3197 -0.5492 1.9223 30 1 4.6429 0.3032 3.2838 31 1 5.3177 -4.5351 6.7159 32 1 7.1824 -3.4235 4.7880 33 1 5.3763 -1.9701 8.3033 34 1 7.5192 -3.1175 8.1957 35 1 2.6046 -4.5849 6.9317 36 1 2.0814 -5.1777 5.3369 37 1 3.7272 -5.5245 5.9191 38 1 1.7312 3.2129 1.0861 39 1 0.7198 1.8411 1.7158 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17317798_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:41:30 Heat of formation + Delta-G solvation = -139.546241 kcal Electronic energy + Delta-G solvation = -28066.377696 eV Core-core repulsion = 23496.187017 eV Total energy + Delta-G solvation = -4570.190680 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.090 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.23092 -48.77344 -48.70877 -41.53512 -40.95705 -38.04016 -37.32532 -36.12250 -33.24391 -30.30685 -28.96018 -28.10810 -26.96758 -26.67653 -25.59217 -24.17589 -23.41397 -21.14017 -20.11247 -19.76390 -19.53040 -19.26436 -18.94165 -17.92431 -17.46960 -17.16303 -16.68213 -16.42851 -16.22115 -15.96307 -15.72206 -15.58369 -15.46809 -15.36298 -15.19471 -15.06549 -14.87991 -14.81945 -14.43176 -14.25075 -14.12978 -14.07349 -13.82711 -13.53031 -13.22210 -13.02472 -12.85939 -12.65592 -12.48992 -12.22387 -12.04929 -11.86230 -11.57680 -11.11390 -10.75052 -10.65033 -10.45038 -9.99808 -8.61999 -4.91883 -0.02462 0.17870 0.74125 1.27001 1.56927 1.63282 1.81676 1.91189 1.98967 2.13119 2.60519 2.66869 2.92517 3.31706 3.33439 3.46509 3.49973 3.64862 3.70159 4.01963 4.18310 4.24736 4.31220 4.35787 4.43388 4.45404 4.54437 4.55220 4.67200 4.68786 4.74974 4.83717 4.86596 4.90969 4.92228 5.07759 5.20789 5.61927 5.75459 6.38842 6.65087 6.92278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.345 6.345 3 C 0.034 3.966 4 C 0.431 3.569 5 F -0.187 7.187 6 F -0.177 7.177 7 F -0.190 7.190 8 C -0.113 4.113 9 C -0.096 4.096 10 H 0.125 0.875 11 C 0.130 3.870 12 N -0.681 5.681 13 C 0.312 3.688 14 N -0.556 5.556 15 C 0.062 3.938 16 C -0.038 4.038 17 O -0.549 6.549 18 Si 0.779 3.221 19 C -0.270 4.270 20 C -0.073 4.073 21 S 0.117 5.883 22 C -0.137 4.137 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.420 0.580 31 H 0.121 0.879 32 H 0.393 0.607 33 H -0.296 1.296 34 H -0.282 1.282 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 3.854 0.728 4.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.263 6.263 3 C -0.008 4.008 4 C 0.376 3.624 5 F -0.169 7.169 6 F -0.158 7.158 7 F -0.172 7.172 8 C -0.150 4.150 9 C -0.115 4.115 10 H 0.143 0.857 11 C 0.006 3.994 12 N -0.322 5.322 13 C -0.059 4.059 14 N -0.283 5.283 15 C -0.069 4.069 16 C -0.151 4.151 17 O -0.357 6.357 18 Si 0.683 3.317 19 C -0.393 4.393 20 C -0.132 4.132 21 S 0.366 5.634 22 C -0.175 4.175 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.128 0.872 26 H 0.110 0.890 27 H 0.142 0.858 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.259 0.741 31 H 0.138 0.862 32 H 0.243 0.757 33 H -0.223 1.223 34 H -0.208 1.208 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.249 3.705 1.272 5.089 hybrid contribution 0.103 -0.332 -0.461 0.577 sum -3.146 3.373 0.811 4.683 Atomic orbital electron populations 1.23334 0.78824 1.05218 1.01998 1.88083 1.22021 1.22430 1.93777 1.24203 1.01244 0.86557 0.88839 1.21672 0.73695 0.78343 0.88669 1.93162 1.32877 1.94482 1.96343 1.93175 1.79047 1.46878 1.96700 1.93186 1.88502 1.74705 1.60783 1.23334 0.90897 1.05621 0.95178 1.22210 0.97699 0.96459 0.95125 0.85690 1.21583 0.85783 0.96323 0.95661 1.43927 1.15893 1.20534 1.51857 1.23478 0.93231 0.93695 0.95530 1.65959 1.30303 1.14624 1.17432 1.20197 0.95136 0.91886 0.99694 1.24836 0.87680 1.04711 0.97826 1.86432 1.51154 1.38953 1.59120 0.92950 0.79589 0.83037 0.76083 1.25411 0.97116 1.05750 1.11058 1.20239 1.01878 0.90908 1.00180 1.83819 1.13745 1.16842 1.49027 1.23662 1.00446 1.01291 0.92118 0.93521 0.90903 0.87201 0.89033 0.85797 0.90257 0.90197 0.74086 0.86166 0.75737 1.22267 1.20849 0.90228 0.90509 0.90222 0.85920 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.30 113.37 1.17 1.16 16 2 O -0.35 0.72 8.52 -148.98 -1.27 -0.55 16 3 C 0.03 -0.15 0.79 -10.27 -0.01 -0.16 16 4 C 0.43 0.18 2.68 71.98 0.19 0.37 16 5 F -0.19 -0.31 14.97 44.97 0.67 0.37 16 6 F -0.18 0.00 15.72 44.97 0.71 0.70 16 7 F -0.19 -0.97 17.26 44.97 0.78 -0.19 16 8 C -0.11 0.83 6.92 31.12 0.22 1.05 16 9 C -0.10 1.01 3.94 -10.27 -0.04 0.97 16 10 H 0.13 -1.71 8.14 -2.39 -0.02 -1.73 16 11 C 0.13 -0.95 5.11 86.38 0.44 -0.51 16 12 N -0.68 2.88 5.71 -351.00 -2.01 0.87 16 13 C 0.31 0.56 8.24 179.32 1.48 2.04 16 14 N -0.56 -2.44 9.77 -189.86 -1.86 -4.29 16 15 C 0.06 0.32 5.19 41.40 0.21 0.54 16 16 C -0.04 -0.14 2.84 71.23 0.20 0.06 16 17 O -0.55 -2.61 12.88 -148.98 -1.92 -4.53 16 18 Si 0.78 2.07 32.62 68.60 2.24 4.30 16 19 C -0.27 -1.13 6.57 24.58 0.16 -0.97 16 20 C -0.07 -0.01 9.70 71.24 0.69 0.68 16 21 S 0.12 0.16 22.32 -56.49 -1.26 -1.10 16 22 C -0.14 1.32 6.62 31.12 0.21 1.53 16 23 H 0.05 -0.13 6.35 -2.39 -0.02 -0.15 16 24 H 0.07 -0.65 6.32 -2.39 -0.02 -0.67 16 25 H 0.11 -0.81 8.14 -2.38 -0.02 -0.82 16 26 H 0.09 -0.49 8.10 -2.39 -0.02 -0.51 16 27 H 0.12 -1.13 7.31 -2.39 -0.02 -1.15 16 28 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.08 -0.37 6.12 -2.38 -0.01 -0.38 16 30 H 0.42 -2.83 8.60 -92.71 -0.80 -3.63 16 31 H 0.12 0.31 6.34 -2.39 -0.02 0.29 16 32 H 0.39 -0.36 8.70 -74.05 -0.64 -1.01 16 33 H -0.30 -2.46 7.11 99.48 0.71 -1.75 16 34 H -0.28 -2.06 7.11 99.48 0.71 -1.35 16 35 H 0.08 -0.13 8.14 -2.38 -0.02 -0.15 16 36 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.08 -0.01 7.18 -2.39 -0.02 -0.03 16 38 H 0.12 -1.36 7.68 -2.39 -0.02 -1.37 16 39 H 0.11 -1.21 6.42 -2.38 -0.02 -1.23 16 Total: 0.00 -14.85 342.72 0.73 -14.11 By element: Atomic # 1 Polarization: -16.17 SS G_CDS: -0.27 Total: -16.44 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 4.92 Total: 6.76 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -3.86 Total: -3.42 kcal Atomic # 8 Polarization: -1.89 SS G_CDS: -3.19 Total: -5.08 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 2.16 Total: 0.87 kcal Atomic # 14 Polarization: 2.07 SS G_CDS: 2.24 Total: 4.30 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.26 Total: -1.10 kcal Total: -14.85 0.73 -14.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17317798_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.435 kcal (2) G-P(sol) polarization free energy of solvation -14.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds