Wall clock time and date at job start Mon Mar 8 2021 09:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99878 * 2 1 4 4 C 1.52999 * 112.85050 * 294.01012 * 3 2 1 5 5 F 1.39893 * 109.47295 * 195.89098 * 4 3 2 6 6 F 1.39902 * 109.46858 * 315.89577 * 4 3 2 7 7 F 1.39903 * 109.47286 * 75.88948 * 4 3 2 8 8 C 1.53777 * 113.68809 * 162.74088 * 3 2 1 9 9 C 1.53779 * 87.08243 * 270.86946 * 8 3 2 10 10 H 1.09002 * 113.69375 * 220.00724 * 9 8 3 11 11 C 1.53000 * 113.61301 * 89.11764 * 9 8 3 12 12 N 1.46503 * 109.47143 * 87.50304 * 11 9 8 13 13 C 1.39141 * 120.00062 * 180.27856 * 12 11 9 14 14 N 1.32342 * 119.71957 * 359.45279 * 13 12 11 15 15 C 1.32002 * 121.64608 * 179.71729 * 14 13 12 16 16 C 1.37983 * 120.90100 * 0.55496 * 15 14 13 17 17 C 1.50703 * 120.32420 * 179.74790 * 16 15 14 18 18 O 1.42905 * 109.46725 * 119.98219 * 17 16 15 19 19 Si 1.86296 * 109.47334 * 359.97438 * 17 16 15 20 20 C 1.38897 * 119.34971 * 359.73506 * 16 15 14 21 21 C 1.38448 * 118.48262 * 359.97438 * 20 16 15 22 22 F 1.35101 * 120.46979 * 180.02562 * 21 20 16 23 23 C 1.53780 * 87.08114 * 334.56927 * 9 8 3 24 24 H 1.08994 * 109.47724 * 304.84336 * 1 2 3 25 25 H 1.09002 * 109.46810 * 64.84496 * 1 2 3 26 26 H 1.09005 * 109.47064 * 184.83991 * 1 2 3 27 27 H 1.09004 * 113.61099 * 156.32619 * 8 3 2 28 28 H 1.08996 * 113.61598 * 25.42364 * 8 3 2 29 29 H 1.09001 * 109.46906 * 327.50612 * 11 9 8 30 30 H 1.08995 * 109.47486 * 207.50348 * 11 9 8 31 31 H 0.96996 * 120.00164 * 0.02562 * 12 11 9 32 32 H 1.08003 * 119.55006 * 180.28641 * 15 14 13 33 33 H 1.09002 * 109.47498 * 239.97861 * 17 16 15 34 34 H 0.96706 * 113.99815 * 179.97438 * 18 17 16 35 35 H 1.48501 * 110.00190 * 298.67658 * 19 17 16 36 36 H 1.48502 * 109.99990 * 59.99776 * 19 17 16 37 37 H 1.08007 * 120.76095 * 180.02562 * 20 16 15 38 38 H 1.09004 * 113.61221 * 139.97726 * 23 9 8 39 39 H 1.08999 * 113.61570 * 270.87710 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7278 2.0816 -1.2879 5 9 2.6016 3.1704 -1.3775 6 9 1.9161 1.2406 -2.3899 7 9 0.4072 2.5434 -1.2741 8 6 3.4901 1.3229 0.4178 9 6 2.9980 1.4842 1.8658 10 1 3.5935 2.1810 2.4557 11 6 2.7565 0.1543 2.5827 12 7 4.0028 -0.2980 3.2058 13 6 4.0319 -1.4950 3.9145 14 7 2.9278 -2.2153 4.0314 15 6 2.9135 -3.3590 4.6902 16 6 4.0555 -3.8428 5.2950 17 6 4.0230 -5.1473 6.0488 18 8 4.9427 -6.0646 5.4530 19 14 2.3033 -5.8605 5.9821 20 6 5.2353 -3.1157 5.2020 21 6 5.2220 -1.9227 4.4996 22 9 6.3469 -1.1835 4.3834 23 6 1.7210 2.1086 1.2791 24 1 -0.3634 0.5871 0.8433 25 1 -0.3633 0.4368 -0.9302 26 1 -0.3633 -1.0240 0.0867 27 1 4.0390 2.1875 0.0444 28 1 4.0067 0.3808 0.2345 29 1 2.4192 -0.5908 1.8622 30 1 1.9944 0.2885 3.3503 31 1 4.8087 0.2352 3.1213 32 1 1.9943 -3.9217 4.7606 33 1 4.3043 -4.9740 7.0875 34 1 4.9750 -6.9277 5.8881 35 1 1.3422 -4.9302 6.6272 36 1 1.9077 -6.1016 4.5712 37 1 6.1426 -3.4732 5.6663 38 1 0.8094 1.8006 1.7913 39 1 1.7862 3.1879 1.1412 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17317798_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:41:33 Heat of formation + Delta-G solvation = -185.509096 kcal Electronic energy + Delta-G solvation = -30054.680769 eV Core-core repulsion = 25079.428387 eV Total energy + Delta-G solvation = -4975.252382 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.29347 -50.03705 -48.82565 -48.76790 -41.70359 -41.27436 -38.16508 -37.47943 -36.19733 -33.43304 -32.12031 -29.95547 -28.22136 -27.45364 -26.81890 -26.07353 -24.72523 -23.25794 -22.81818 -20.81374 -19.85175 -19.58337 -19.45945 -19.03710 -18.59902 -18.27167 -18.05950 -17.28204 -17.05076 -16.67520 -16.47200 -16.23563 -15.80778 -15.67911 -15.65691 -15.51889 -15.45080 -15.19886 -15.08585 -14.95776 -14.93264 -14.62863 -14.40154 -14.37324 -14.11041 -13.95708 -13.86471 -13.28630 -13.11293 -12.68733 -12.56914 -12.27631 -12.08697 -12.05264 -11.66272 -11.44821 -10.91732 -10.86981 -10.77247 -10.23573 -8.84525 -4.91582 -0.24011 0.01609 1.32632 1.49991 1.69031 1.85063 1.99986 2.07070 2.40011 2.53745 2.60343 2.85135 2.91755 3.06868 3.27693 3.34191 3.35989 3.45838 3.61037 3.68457 3.77644 4.08307 4.20083 4.23209 4.30939 4.32860 4.39974 4.43153 4.48041 4.60351 4.61603 4.64897 4.70742 4.78081 4.81066 4.89374 5.06628 5.27053 5.69720 5.83921 6.08769 6.84317 6.95580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.346 6.346 3 C 0.035 3.965 4 C 0.432 3.568 5 F -0.175 7.175 6 F -0.189 7.189 7 F -0.185 7.185 8 C -0.114 4.114 9 C -0.103 4.103 10 H 0.120 0.880 11 C 0.147 3.853 12 N -0.710 5.710 13 C 0.379 3.621 14 N -0.529 5.529 15 C 0.127 3.873 16 C -0.172 4.172 17 C -0.064 4.064 18 O -0.566 6.566 19 Si 0.771 3.229 20 C -0.037 4.037 21 C -0.029 4.029 22 F -0.134 7.134 23 C -0.134 4.134 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.419 0.581 32 H 0.156 0.844 33 H 0.101 0.899 34 H 0.405 0.595 35 H -0.282 1.282 36 H -0.296 1.296 37 H 0.166 0.834 38 H 0.102 0.898 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 -1.877 5.937 6.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.264 6.264 3 C -0.008 4.008 4 C 0.377 3.623 5 F -0.157 7.157 6 F -0.171 7.171 7 F -0.166 7.166 8 C -0.151 4.151 9 C -0.122 4.122 10 H 0.138 0.862 11 C 0.024 3.976 12 N -0.344 5.344 13 C 0.140 3.860 14 N -0.247 5.247 15 C -0.030 4.030 16 C -0.177 4.177 17 C -0.175 4.175 18 O -0.376 6.376 19 Si 0.677 3.323 20 C -0.063 4.063 21 C -0.055 4.055 22 F -0.113 7.113 23 C -0.172 4.172 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.258 0.742 32 H 0.173 0.827 33 H 0.119 0.881 34 H 0.257 0.743 35 H -0.209 1.209 36 H -0.223 1.223 37 H 0.183 0.817 38 H 0.120 0.880 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.968 -1.019 4.741 5.233 hybrid contribution 1.111 0.808 -0.508 1.465 sum -0.857 -0.211 4.233 4.324 Atomic orbital electron populations 1.23225 0.78887 1.05034 1.01632 1.88098 1.21946 1.22531 1.93812 1.24188 1.00708 0.86263 0.89602 1.21556 0.74138 0.78709 0.87859 1.93167 1.69350 1.56528 1.96635 1.93185 1.94870 1.71345 1.57692 1.93181 1.36870 1.89724 1.96857 1.23355 0.90551 1.05536 0.95673 1.22330 0.97939 0.96758 0.95168 0.86151 1.21214 0.85341 0.94766 0.96302 1.44515 1.14172 1.19882 1.55806 1.18549 0.88115 0.88623 0.90712 1.67259 1.26854 1.08529 1.22017 1.22323 0.97833 0.91259 0.91568 1.20267 0.93676 0.98945 1.04802 1.24604 1.06413 0.88430 0.98039 1.86441 1.63323 1.28230 1.59583 0.94192 0.72203 0.86308 0.79597 1.21483 0.99965 0.90467 0.94427 1.18093 0.83036 0.95298 1.09115 1.91480 1.48915 1.75878 1.95018 1.23609 1.00042 1.01344 0.92225 0.91185 0.93663 0.87435 0.85468 0.89457 0.91035 0.91469 0.74228 0.82723 0.88123 0.74307 1.20871 1.22334 0.81678 0.87994 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.30 113.37 1.17 1.16 16 2 O -0.35 -0.98 8.37 -148.98 -1.25 -2.23 16 3 C 0.03 -0.01 0.84 -10.27 -0.01 -0.02 16 4 C 0.43 1.40 2.52 71.98 0.18 1.58 16 5 F -0.18 -0.46 15.81 44.97 0.71 0.25 16 6 F -0.19 -1.46 17.10 44.97 0.77 -0.69 16 7 F -0.18 -0.71 15.39 44.97 0.69 -0.01 16 8 C -0.11 0.34 6.89 31.12 0.21 0.55 16 9 C -0.10 0.53 3.94 -10.27 -0.04 0.49 16 10 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 11 C 0.15 -0.02 5.28 86.38 0.46 0.43 16 12 N -0.71 -1.19 5.71 -344.81 -1.97 -3.16 16 13 C 0.38 2.50 7.49 133.08 1.00 3.50 16 14 N -0.53 -4.53 9.57 -193.04 -1.85 -6.38 16 15 C 0.13 0.83 9.84 84.61 0.83 1.67 16 16 C -0.17 -0.68 5.43 -19.77 -0.11 -0.79 16 17 C -0.06 0.17 2.83 71.24 0.20 0.37 16 18 O -0.57 1.24 12.75 -148.98 -1.90 -0.66 16 19 Si 0.77 -3.01 29.82 68.60 2.05 -0.97 16 20 C -0.04 -0.16 9.75 22.48 0.22 0.06 16 21 C -0.03 -0.17 7.35 22.59 0.17 -0.01 16 22 F -0.13 -0.77 16.65 44.97 0.75 -0.02 16 23 C -0.13 0.68 6.51 31.12 0.20 0.89 16 24 H 0.07 -0.28 6.55 -2.39 -0.02 -0.29 16 25 H 0.04 0.03 6.69 -2.39 -0.02 0.01 16 26 H 0.11 -0.26 8.14 -2.38 -0.02 -0.28 16 27 H 0.13 -0.70 7.02 -2.39 -0.02 -0.71 16 28 H 0.09 -0.06 8.10 -2.39 -0.02 -0.08 16 29 H 0.07 0.29 6.12 -2.39 -0.01 0.27 16 30 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.42 -0.70 7.94 -92.71 -0.74 -1.43 16 32 H 0.16 0.73 4.88 -2.91 -0.01 0.71 16 33 H 0.10 -0.73 7.96 -2.39 -0.02 -0.75 16 34 H 0.41 -5.18 8.74 -74.05 -0.65 -5.82 16 35 H -0.28 -0.28 7.11 99.48 0.71 0.42 16 36 H -0.30 -1.20 7.11 99.48 0.71 -0.50 16 37 H 0.17 0.09 8.06 -2.91 -0.02 0.06 16 38 H 0.10 -0.62 6.63 -2.38 -0.02 -0.63 16 39 H 0.12 -0.91 8.04 -2.39 -0.02 -0.93 16 Total: 0.00 -17.23 335.51 2.28 -14.95 By element: Atomic # 1 Polarization: -10.78 SS G_CDS: -0.20 Total: -10.98 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.48 Total: 9.89 kcal Atomic # 7 Polarization: -5.72 SS G_CDS: -3.81 Total: -9.54 kcal Atomic # 8 Polarization: 0.26 SS G_CDS: -3.15 Total: -2.89 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 2.92 Total: -0.47 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.97 kcal Total: -17.23 2.28 -14.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17317798_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.562 kcal (2) G-P(sol) polarization free energy of solvation -17.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds