Wall clock time and date at job start Mon Mar 8 2021 10:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00200 * 2 1 4 4 O 1.20830 * 120.00272 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99876 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47036 * 180.02562 * 5 3 2 7 7 H 1.08997 * 112.84642 * 316.19118 * 6 5 3 8 8 C 1.53778 * 113.61328 * 87.50049 * 6 5 3 9 9 C 1.53791 * 87.07824 * 139.98237 * 8 6 5 10 10 H 1.08993 * 113.68748 * 89.12568 * 9 8 6 11 11 N 1.46502 * 113.61102 * 220.01919 * 9 8 6 12 12 C 1.38408 * 119.99469 * 252.49522 * 11 9 8 13 13 N 1.32494 * 119.21229 * 180.02562 * 12 11 9 14 14 C 1.32282 * 120.74101 * 179.97438 * 13 12 11 15 15 C 1.38604 * 119.19157 * 0.02562 * 14 13 12 16 16 C 1.50711 * 120.71576 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.47004 * 244.97554 * 16 15 14 18 18 Si 1.86299 * 109.47132 * 4.98098 * 16 15 14 19 19 C 1.38603 * 118.56551 * 359.97438 * 15 14 13 20 20 N 1.32281 * 119.19194 * 0.02562 * 19 15 14 21 21 C 1.53778 * 87.08067 * 334.56512 * 9 8 6 22 22 H 1.08992 * 109.47331 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46816 * 300.00549 * 1 2 3 24 24 H 1.08999 * 109.47262 * 59.99677 * 1 2 3 25 25 H 1.08994 * 109.47503 * 60.00332 * 5 3 2 26 26 H 1.09003 * 109.47251 * 299.99557 * 5 3 2 27 27 H 1.08991 * 113.61718 * 25.43500 * 8 6 5 28 28 H 1.08999 * 113.61299 * 254.52915 * 8 6 5 29 29 H 0.96994 * 120.00176 * 72.50138 * 11 9 8 30 30 H 1.07992 * 120.39987 * 179.97438 * 14 13 12 31 31 H 1.09006 * 109.46390 * 124.97677 * 16 15 14 32 32 H 0.96707 * 113.99829 * 180.02562 * 17 16 15 33 33 H 1.48498 * 110.00030 * 299.99743 * 18 16 15 34 34 H 1.48502 * 110.00080 * 61.31430 * 18 16 15 35 35 H 1.07993 * 120.40362 * 179.97438 * 19 15 14 36 36 H 1.08999 * 113.61734 * 139.97880 * 21 9 8 37 37 H 1.08995 * 113.61782 * 270.80244 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4248 3.3538 -0.6945 8 6 4.1166 3.3492 1.4082 9 6 5.3820 4.0664 0.9087 10 1 5.1856 5.0417 0.4634 11 7 6.4658 4.0986 1.8940 12 6 6.7846 5.2840 2.5334 13 7 7.7679 5.2955 3.4213 14 6 8.0984 6.4116 4.0499 15 6 7.4018 7.5767 3.7699 16 6 7.7498 8.8677 4.4654 17 8 6.6520 9.2797 5.2820 18 14 9.2557 8.6120 5.5321 19 6 6.3790 7.5292 2.8357 20 7 6.0994 6.3801 2.2431 21 6 5.5210 2.9347 -0.1231 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 3.9557 0.7809 -0.8908 26 1 3.9564 0.7805 0.8892 27 1 4.3112 2.6119 2.1870 28 1 3.3011 4.0271 1.6601 29 1 6.9599 3.2893 2.0980 30 1 8.9005 6.4146 4.7729 31 1 7.9579 9.6365 3.7213 32 1 6.8060 10.1060 5.7604 33 1 8.9849 7.5659 6.5507 34 1 10.4126 8.2139 4.6905 35 1 5.8166 8.4192 2.5953 36 1 5.8391 3.2780 -1.1075 37 1 6.1007 2.0847 0.2365 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17321984_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:14:17 Heat of formation + Delta-G solvation = -26.915453 kcal Electronic energy + Delta-G solvation = -21134.394503 eV Core-core repulsion = 17687.038536 eV Total energy + Delta-G solvation = -3447.355967 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.26331 -41.64723 -40.21202 -37.93114 -37.54119 -35.86819 -34.88419 -32.77293 -31.26219 -28.45107 -26.83203 -26.67821 -26.10194 -24.27826 -23.03078 -21.80670 -20.74479 -19.31908 -19.02784 -18.58612 -18.29568 -17.72336 -17.57224 -16.67934 -16.41927 -16.28615 -16.14309 -15.78124 -15.20245 -14.94057 -14.80076 -14.51318 -14.15667 -13.98697 -13.55442 -13.42173 -13.17486 -12.99420 -12.92819 -12.38346 -12.18742 -12.05832 -11.93690 -11.85108 -11.80267 -11.52003 -11.44310 -11.17393 -10.60322 -10.04406 -9.19083 -4.95365 -0.13341 -0.01964 1.14894 1.31203 1.65298 1.67063 1.81486 1.96790 2.61361 2.98519 3.36662 3.41023 3.44779 3.45569 3.57618 3.77004 3.80319 3.87282 3.88519 4.11500 4.22985 4.25083 4.27094 4.43653 4.51420 4.58553 4.64244 4.66673 4.70046 4.75304 4.81537 4.98543 5.04451 5.08150 5.33943 5.42407 5.64567 5.95995 6.27253 6.68586 6.96070 7.13124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.455 3.545 4 O -0.542 6.542 5 C -0.097 4.097 6 C -0.092 4.092 7 H 0.093 0.907 8 C -0.149 4.149 9 C 0.135 3.865 10 H 0.107 0.893 11 N -0.676 5.676 12 C 0.551 3.449 13 N -0.587 5.587 14 C 0.176 3.824 15 C -0.254 4.254 16 C -0.054 4.054 17 O -0.566 6.566 18 Si 0.772 3.228 19 C 0.217 3.783 20 N -0.579 5.579 21 C -0.121 4.121 22 H 0.128 0.872 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.136 0.864 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.420 0.580 30 H 0.162 0.838 31 H 0.103 0.897 32 H 0.406 0.594 33 H -0.296 1.296 34 H -0.287 1.287 35 H 0.194 0.806 36 H 0.090 0.910 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 1.215 -0.390 2.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.300 3.700 4 O -0.432 6.432 5 C -0.134 4.134 6 C -0.111 4.111 7 H 0.111 0.889 8 C -0.188 4.188 9 C 0.030 3.970 10 H 0.124 0.876 11 N -0.312 5.312 12 C 0.194 3.806 13 N -0.310 5.310 14 C 0.009 3.991 15 C -0.262 4.262 16 C -0.166 4.166 17 O -0.376 6.376 18 Si 0.678 3.322 19 C 0.049 3.951 20 N -0.302 5.302 21 C -0.159 4.159 22 H 0.146 0.854 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.154 0.846 26 H 0.145 0.855 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.259 0.741 30 H 0.178 0.822 31 H 0.121 0.879 32 H 0.257 0.743 33 H -0.224 1.224 34 H -0.214 1.214 35 H 0.211 0.789 36 H 0.109 0.891 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.350 -0.494 -0.976 2.592 hybrid contribution -0.378 0.316 0.297 0.575 sum 1.972 -0.178 -0.679 2.093 Atomic orbital electron populations 1.23478 0.75302 1.05464 1.02261 1.86510 1.24615 1.33483 1.83811 1.24533 0.93562 0.80843 0.71062 1.90681 1.68313 1.37447 1.46772 1.21532 0.85143 0.98574 1.08191 1.22113 0.96819 0.94477 0.97729 0.88879 1.23604 0.97669 1.00063 0.97466 1.22574 0.85377 1.00196 0.88899 0.87552 1.44295 1.37844 1.06551 1.42535 1.19726 0.85996 0.87930 0.86980 1.67879 1.19343 1.30815 1.12929 1.22852 0.95701 0.87176 0.93355 1.21073 1.03094 0.97394 1.04635 1.24433 0.99096 0.94166 0.98863 1.86443 1.40061 1.47480 1.63646 0.94155 0.73439 0.86172 0.78403 1.23317 0.90179 0.94999 0.86559 1.68043 1.31303 0.99628 1.31199 1.23392 0.94826 0.98096 0.99611 0.85414 0.92397 0.92108 0.84607 0.85477 0.89132 0.92965 0.74053 0.82165 0.87926 0.74269 1.22413 1.21409 0.78910 0.89144 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.37 -1.11 10.56 -51.38 -0.54 -1.65 16 3 C 0.45 1.73 7.96 71.24 0.57 2.30 16 4 O -0.54 -5.97 15.51 21.95 0.34 -5.63 16 5 C -0.10 0.42 5.65 29.85 0.17 0.59 16 6 C -0.09 0.19 3.15 -10.26 -0.03 0.16 16 7 H 0.09 0.13 7.68 -2.39 -0.02 0.11 16 8 C -0.15 -0.22 7.43 31.12 0.23 0.02 16 9 C 0.13 0.13 4.25 45.52 0.19 0.33 16 10 H 0.11 0.46 7.37 -2.39 -0.02 0.44 16 11 N -0.68 -2.42 5.50 -327.92 -1.80 -4.23 16 12 C 0.55 5.28 8.42 261.49 2.20 7.48 16 13 N -0.59 -6.45 10.46 -197.99 -2.07 -8.52 16 14 C 0.18 1.48 9.92 84.71 0.84 2.32 16 15 C -0.25 -1.31 5.40 -19.69 -0.11 -1.41 16 16 C -0.05 0.12 2.82 71.24 0.20 0.33 16 17 O -0.57 1.13 12.82 -148.98 -1.91 -0.78 16 18 Si 0.77 -2.61 29.92 68.60 2.05 -0.56 16 19 C 0.22 1.27 10.99 84.71 0.93 2.20 16 20 N -0.58 -5.48 9.13 -197.99 -1.81 -7.29 16 21 C -0.12 0.63 7.39 31.12 0.23 0.86 16 22 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 23 H 0.06 0.06 8.13 -2.38 -0.02 0.04 16 24 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 25 H 0.14 -1.23 8.14 -2.39 -0.02 -1.25 16 26 H 0.13 -1.00 7.84 -2.39 -0.02 -1.02 16 27 H 0.09 0.01 7.89 -2.39 -0.02 -0.01 16 28 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.42 0.07 8.84 -92.71 -0.82 -0.75 16 30 H 0.16 0.96 5.04 -2.91 -0.01 0.95 16 31 H 0.10 -0.76 7.96 -2.38 -0.02 -0.78 16 32 H 0.41 -5.15 8.74 -74.05 -0.65 -5.79 16 33 H -0.30 -1.30 7.06 99.48 0.70 -0.59 16 34 H -0.29 -0.62 7.11 99.48 0.71 0.08 16 35 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 36 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.11 -1.00 8.08 -2.39 -0.02 -1.02 16 Total: 0.00 -23.46 318.35 0.56 -22.91 By element: Atomic # 1 Polarization: -10.27 SS G_CDS: -0.32 Total: -10.60 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.62 Total: 16.36 kcal Atomic # 7 Polarization: -14.36 SS G_CDS: -5.68 Total: -20.04 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -2.11 Total: -8.06 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.05 Total: -0.56 kcal Total: -23.46 0.56 -22.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17321984_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.010 kcal (2) G-P(sol) polarization free energy of solvation -23.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds