Wall clock time and date at job start Mon Mar 8 2021 10:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00242 * 2 1 4 4 O 1.20825 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00063 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46824 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.91150 * 43.74817 * 6 5 3 8 8 C 1.53791 * 113.60994 * 174.99865 * 6 5 3 9 9 C 1.53786 * 87.07966 * 139.97886 * 8 6 5 10 10 H 1.08998 * 113.60870 * 89.19954 * 9 8 6 11 11 N 1.46499 * 113.61394 * 220.01815 * 9 8 6 12 12 C 1.39003 * 119.99819 * 205.27901 * 11 9 8 13 13 N 1.32395 * 119.70607 * 179.72604 * 12 11 9 14 14 C 1.31969 * 121.62160 * 180.02562 * 13 12 11 15 15 C 1.38017 * 120.85966 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.33728 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47111 * 119.99596 * 16 15 14 18 18 Si 1.86304 * 109.47004 * 359.97438 * 16 15 14 19 19 C 1.38880 * 119.32965 * 359.97438 * 15 14 13 20 20 C 1.38300 * 118.50506 * 359.73467 * 19 15 14 21 21 C 1.53778 * 87.08287 * 334.56878 * 9 8 6 22 22 H 1.09000 * 109.46774 * 59.99894 * 1 2 3 23 23 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47047 * 300.00118 * 1 2 3 25 25 H 1.09000 * 109.46957 * 59.99824 * 5 3 2 26 26 H 1.09005 * 109.46736 * 299.99738 * 5 3 2 27 27 H 1.08999 * 113.61698 * 25.43239 * 8 6 5 28 28 H 1.09001 * 113.60977 * 254.52695 * 8 6 5 29 29 H 0.97001 * 119.99790 * 24.99683 * 11 9 8 30 30 H 1.08003 * 119.56786 * 179.97438 * 14 13 12 31 31 H 1.08994 * 109.47183 * 240.00015 * 16 15 14 32 32 H 0.96698 * 114.00050 * 180.02562 * 17 16 15 33 33 H 1.48499 * 110.00047 * 59.99795 * 18 16 15 34 34 H 1.48503 * 109.99976 * 181.32296 * 18 16 15 35 35 H 1.07997 * 120.74801 * 180.02562 * 19 15 14 36 36 H 1.07998 * 120.45637 * 180.28709 * 20 19 15 37 37 H 1.08997 * 113.61721 * 139.97826 * 21 9 8 38 38 H 1.09004 * 113.61436 * 270.88721 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7419 -0.0011 7 1 3.4253 3.3546 0.6932 8 6 5.5211 2.9346 0.1211 9 6 5.3813 4.0667 -0.9103 10 1 5.1854 5.0418 -0.4644 11 7 6.4644 4.0992 -1.8963 12 6 6.7880 5.2911 -2.5341 13 7 7.7714 5.3151 -3.4202 14 6 8.1106 6.4255 -4.0475 15 6 7.4470 7.6099 -3.7991 16 6 7.8438 8.8710 -4.5226 17 8 6.7297 9.3614 -5.2711 18 14 9.2571 8.5044 -5.6799 19 6 6.4091 7.6277 -2.8765 20 6 6.0722 6.4473 -2.2394 21 6 4.1156 3.3497 -1.4090 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9558 0.7807 -0.8908 26 1 3.9565 0.7804 0.8892 27 1 6.0994 2.0841 -0.2398 28 1 5.8400 3.2776 1.1054 29 1 6.9583 3.2899 -2.1010 30 1 8.9186 6.4074 -4.7639 31 1 8.1541 9.6234 -3.7977 32 1 6.9133 10.1730 -5.7636 33 1 8.8473 7.4795 -6.6733 34 1 9.6788 9.7466 -6.3759 35 1 5.8740 8.5416 -2.6649 36 1 5.2672 6.4242 -1.5197 37 1 3.2999 4.0277 -1.6600 38 1 4.3096 2.6126 -2.1882 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17321984_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:14:20 Heat of formation + Delta-G solvation = -44.676445 kcal Electronic energy + Delta-G solvation = -20974.747469 eV Core-core repulsion = 17592.047238 eV Total energy + Delta-G solvation = -3382.700231 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71318 -41.27259 -40.12221 -37.94061 -37.42654 -35.62102 -33.38640 -32.08941 -30.85485 -28.45841 -26.84864 -26.44484 -24.88235 -24.12919 -22.42769 -21.55052 -20.73198 -18.75375 -18.51294 -18.50219 -18.02833 -17.59054 -17.48735 -16.59047 -16.41687 -16.13930 -15.47607 -15.41421 -15.17173 -14.80750 -14.45001 -14.19718 -13.94013 -13.88179 -13.77220 -13.58218 -13.39971 -13.02925 -12.94895 -12.37649 -12.09323 -11.99269 -11.89801 -11.77165 -11.48494 -11.40302 -11.00713 -10.65563 -10.52110 -10.24215 -8.62059 -4.94185 0.32615 0.51427 1.22419 1.32264 1.61665 1.70477 1.99104 2.14574 2.86402 3.31171 3.33415 3.42946 3.58555 3.64675 3.70878 3.83079 3.89101 4.00507 4.13509 4.15862 4.18926 4.22612 4.27785 4.39379 4.40610 4.47434 4.57077 4.58965 4.64147 4.67020 4.82061 4.92949 4.97560 5.10144 5.21770 5.39427 5.42985 5.60383 6.06853 6.47561 6.59808 6.75434 7.23482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.103 4.103 6 C -0.100 4.100 7 H 0.107 0.893 8 C -0.138 4.138 9 C 0.131 3.869 10 H 0.112 0.888 11 N -0.711 5.711 12 C 0.407 3.593 13 N -0.539 5.539 14 C 0.158 3.842 15 C -0.189 4.189 16 C -0.060 4.060 17 O -0.538 6.538 18 Si 0.675 3.325 19 C -0.005 4.005 20 C -0.239 4.239 21 C -0.150 4.150 22 H 0.063 0.937 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.406 0.594 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.379 0.621 33 H -0.253 1.253 34 H -0.260 1.260 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -1.302 3.072 3.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.392 6.392 5 C -0.140 4.140 6 C -0.119 4.119 7 H 0.126 0.874 8 C -0.177 4.177 9 C 0.025 3.975 10 H 0.130 0.870 11 N -0.342 5.342 12 C 0.172 3.828 13 N -0.256 5.256 14 C 0.001 3.999 15 C -0.194 4.194 16 C -0.170 4.170 17 O -0.345 6.345 18 Si 0.577 3.423 19 C -0.030 4.030 20 C -0.263 4.263 21 C -0.189 4.189 22 H 0.082 0.918 23 H 0.121 0.879 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.242 0.758 30 H 0.172 0.828 31 H 0.092 0.908 32 H 0.226 0.774 33 H -0.178 1.178 34 H -0.185 1.185 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.816 -2.288 2.458 3.817 hybrid contribution -1.368 1.367 -0.340 1.964 sum 0.448 -0.921 2.118 2.353 Atomic orbital electron populations 1.23300 0.75941 1.03943 1.02689 1.86506 1.23789 1.33544 1.84050 1.23822 0.92302 0.81384 0.72325 1.90688 1.67258 1.36314 1.44913 1.21409 0.87581 0.98903 1.06154 1.22253 0.96188 0.94239 0.99172 0.87441 1.23433 0.95607 0.98691 0.99933 1.22510 0.86454 0.99458 0.89086 0.87023 1.44510 1.37836 1.08356 1.43535 1.18430 0.89129 0.86619 0.88642 1.67168 1.17411 1.29864 1.11162 1.22130 0.96424 0.86437 0.94913 1.19913 1.01907 0.95265 1.02327 1.24520 0.96960 0.95938 0.99629 1.86593 1.35892 1.46241 1.65798 0.95250 0.82839 0.81934 0.82325 1.21165 0.92926 0.97714 0.91239 1.21473 1.05198 0.92664 1.07003 1.23660 0.98262 1.00500 0.96522 0.91793 0.87915 0.91759 0.87391 0.87159 0.88954 0.89976 0.75757 0.82810 0.90783 0.77352 1.17783 1.18516 0.84793 0.84826 0.90477 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.40 10.56 -39.23 -0.41 -0.82 16 3 C 0.46 0.53 7.96 36.01 0.29 0.82 16 4 O -0.50 -2.06 15.51 -18.75 -0.29 -2.35 16 5 C -0.10 0.24 5.65 -27.88 -0.16 0.08 16 6 C -0.10 0.21 3.15 -89.80 -0.28 -0.07 16 7 H 0.11 -0.11 7.68 -51.93 -0.40 -0.51 16 8 C -0.14 0.45 7.39 -25.91 -0.19 0.26 16 9 C 0.13 -0.23 4.03 -67.12 -0.27 -0.50 16 10 H 0.11 -0.22 6.11 -51.93 -0.32 -0.54 16 11 N -0.71 0.03 5.53 -53.14 -0.29 -0.26 16 12 C 0.41 0.98 7.65 -155.02 -1.19 -0.21 16 13 N -0.54 -1.94 10.39 -12.44 -0.13 -2.07 16 14 C 0.16 0.39 9.84 -17.57 -0.17 0.22 16 15 C -0.19 -0.39 5.43 -104.46 -0.57 -0.96 16 16 C -0.06 -0.02 2.83 36.01 0.10 0.08 16 17 O -0.54 -0.84 12.75 -35.23 -0.45 -1.29 16 18 Si 0.68 -0.34 29.82 -169.99 -5.07 -5.41 16 19 C 0.00 -0.01 9.76 -39.32 -0.38 -0.39 16 20 C -0.24 -0.39 9.28 -39.22 -0.36 -0.76 16 21 C -0.15 0.18 7.43 -25.92 -0.19 -0.01 16 22 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 23 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 24 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 25 H 0.11 -0.38 7.84 -51.93 -0.41 -0.79 16 26 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 27 H 0.09 -0.37 8.08 -51.93 -0.42 -0.79 16 28 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 29 H 0.41 -0.30 8.85 -40.82 -0.36 -0.66 16 30 H 0.16 0.05 4.88 -52.48 -0.26 -0.20 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.38 -0.93 8.74 45.56 0.40 -0.53 16 33 H -0.25 -0.70 7.11 56.52 0.40 -0.30 16 34 H -0.26 -0.36 7.11 56.52 0.40 0.05 16 35 H 0.13 0.07 8.06 -52.49 -0.42 -0.35 16 36 H 0.13 -0.03 6.04 -52.49 -0.32 -0.35 16 37 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 38 H 0.09 -0.10 7.89 -51.93 -0.41 -0.51 16 LS Contribution 320.70 15.07 4.83 4.83 Total: 0.00 -8.20 320.70 -9.19 -17.39 By element: Atomic # 1 Polarization: -4.56 SS G_CDS: -5.06 Total: -9.62 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.31 Total: -0.40 kcal Atomic # 7 Polarization: -1.91 SS G_CDS: -0.42 Total: -2.34 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -1.15 Total: -4.45 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: -5.07 Total: -5.41 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -8.20 -9.19 -17.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17321984_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.290 kcal (2) G-P(sol) polarization free energy of solvation -8.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds