Wall clock time and date at job start Mon Mar 8 2021 10:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00242 * 2 1 4 4 O 1.20825 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00063 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46824 * 179.97438 * 5 3 2 7 7 H 1.08997 * 112.91150 * 43.74817 * 6 5 3 8 8 C 1.53791 * 113.60994 * 174.99865 * 6 5 3 9 9 C 1.53786 * 87.07966 * 139.97886 * 8 6 5 10 10 H 1.08998 * 113.60870 * 89.19954 * 9 8 6 11 11 N 1.46499 * 113.61394 * 220.01815 * 9 8 6 12 12 C 1.39003 * 119.99819 * 205.27901 * 11 9 8 13 13 N 1.32395 * 119.70607 * 179.72604 * 12 11 9 14 14 C 1.31969 * 121.62160 * 180.02562 * 13 12 11 15 15 C 1.38017 * 120.85966 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.33728 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47111 * 119.99596 * 16 15 14 18 18 Si 1.86304 * 109.47004 * 359.97438 * 16 15 14 19 19 C 1.38880 * 119.32965 * 359.97438 * 15 14 13 20 20 C 1.38300 * 118.50506 * 359.73467 * 19 15 14 21 21 C 1.53778 * 87.08287 * 334.56878 * 9 8 6 22 22 H 1.09000 * 109.46774 * 59.99894 * 1 2 3 23 23 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47047 * 300.00118 * 1 2 3 25 25 H 1.09000 * 109.46957 * 59.99824 * 5 3 2 26 26 H 1.09005 * 109.46736 * 299.99738 * 5 3 2 27 27 H 1.08999 * 113.61698 * 25.43239 * 8 6 5 28 28 H 1.09001 * 113.60977 * 254.52695 * 8 6 5 29 29 H 0.97001 * 119.99790 * 24.99683 * 11 9 8 30 30 H 1.08003 * 119.56786 * 179.97438 * 14 13 12 31 31 H 1.08994 * 109.47183 * 240.00015 * 16 15 14 32 32 H 0.96698 * 114.00050 * 180.02562 * 17 16 15 33 33 H 1.48499 * 110.00047 * 59.99795 * 18 16 15 34 34 H 1.48503 * 109.99976 * 181.32296 * 18 16 15 35 35 H 1.07997 * 120.74801 * 180.02562 * 19 15 14 36 36 H 1.07998 * 120.45637 * 180.28709 * 20 19 15 37 37 H 1.08997 * 113.61721 * 139.97826 * 21 9 8 38 38 H 1.09004 * 113.61436 * 270.88721 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7419 -0.0011 7 1 3.4253 3.3546 0.6932 8 6 5.5211 2.9346 0.1211 9 6 5.3813 4.0667 -0.9103 10 1 5.1854 5.0418 -0.4644 11 7 6.4644 4.0992 -1.8963 12 6 6.7880 5.2911 -2.5341 13 7 7.7714 5.3151 -3.4202 14 6 8.1106 6.4255 -4.0475 15 6 7.4470 7.6099 -3.7991 16 6 7.8438 8.8710 -4.5226 17 8 6.7297 9.3614 -5.2711 18 14 9.2571 8.5044 -5.6799 19 6 6.4091 7.6277 -2.8765 20 6 6.0722 6.4473 -2.2394 21 6 4.1156 3.3497 -1.4090 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9558 0.7807 -0.8908 26 1 3.9565 0.7804 0.8892 27 1 6.0994 2.0841 -0.2398 28 1 5.8400 3.2776 1.1054 29 1 6.9583 3.2899 -2.1010 30 1 8.9186 6.4074 -4.7639 31 1 8.1541 9.6234 -3.7977 32 1 6.9133 10.1730 -5.7636 33 1 8.8473 7.4795 -6.6733 34 1 9.6788 9.7466 -6.3759 35 1 5.8740 8.5416 -2.6649 36 1 5.2672 6.4242 -1.5197 37 1 3.2999 4.0277 -1.6600 38 1 4.3096 2.6126 -2.1882 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17321984_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:14:19 Heat of formation + Delta-G solvation = -43.418334 kcal Electronic energy + Delta-G solvation = -20974.692913 eV Core-core repulsion = 17592.047238 eV Total energy + Delta-G solvation = -3382.645675 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.73307 -41.35667 -40.06155 -37.98531 -37.52120 -35.63296 -33.48661 -32.06607 -30.85336 -28.40908 -26.69105 -26.47129 -24.93929 -24.12973 -22.49006 -21.55155 -20.59781 -18.79354 -18.54948 -18.53558 -18.06714 -17.61916 -17.52199 -16.63635 -16.35623 -16.09139 -15.53425 -15.39427 -15.22768 -14.79311 -14.44948 -14.21064 -14.01225 -13.95312 -13.79984 -13.42501 -13.32203 -12.92025 -12.89722 -12.42100 -12.03786 -12.01621 -11.88387 -11.79793 -11.47255 -11.33963 -11.01198 -10.75317 -10.60213 -10.31092 -8.66235 -4.91976 0.21447 0.39910 1.16944 1.32699 1.60160 1.76186 1.96400 2.15872 2.77616 3.43467 3.45896 3.50297 3.59247 3.75176 3.83550 3.85589 3.90810 3.99668 4.09964 4.24297 4.26144 4.28147 4.36870 4.45772 4.50830 4.61990 4.68093 4.75076 4.76034 4.78498 4.87005 5.01791 5.06403 5.11698 5.26753 5.35924 5.43568 5.57708 6.06025 6.57305 6.63246 6.70417 7.14675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.542 6.542 5 C -0.099 4.099 6 C -0.095 4.095 7 H 0.095 0.905 8 C -0.122 4.122 9 C 0.128 3.872 10 H 0.113 0.887 11 N -0.705 5.705 12 C 0.394 3.606 13 N -0.563 5.563 14 C 0.145 3.855 15 C -0.200 4.200 16 C -0.067 4.067 17 O -0.560 6.560 18 Si 0.755 3.245 19 C -0.014 4.014 20 C -0.245 4.245 21 C -0.153 4.153 22 H 0.057 0.943 23 H 0.127 0.873 24 H 0.060 0.940 25 H 0.125 0.875 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.409 0.591 30 H 0.167 0.833 31 H 0.096 0.904 32 H 0.394 0.606 33 H -0.301 1.301 34 H -0.282 1.282 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.057 0.943 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -1.694 3.843 4.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.432 6.432 5 C -0.136 4.136 6 C -0.115 4.115 7 H 0.113 0.887 8 C -0.160 4.160 9 C 0.022 3.978 10 H 0.131 0.869 11 N -0.336 5.336 12 C 0.158 3.842 13 N -0.281 5.281 14 C -0.012 4.012 15 C -0.205 4.205 16 C -0.176 4.176 17 O -0.370 6.370 18 Si 0.660 3.340 19 C -0.040 4.040 20 C -0.269 4.269 21 C -0.192 4.192 22 H 0.076 0.924 23 H 0.145 0.855 24 H 0.079 0.921 25 H 0.143 0.857 26 H 0.152 0.848 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.246 0.754 30 H 0.183 0.817 31 H 0.114 0.886 32 H 0.245 0.755 33 H -0.229 1.229 34 H -0.209 1.209 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.075 0.925 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.495 -2.685 3.255 4.901 hybrid contribution -1.651 1.465 -0.620 2.293 sum 0.844 -1.219 2.635 3.023 Atomic orbital electron populations 1.23472 0.75329 1.05431 1.02260 1.86512 1.24598 1.33606 1.83812 1.24556 0.93588 0.80818 0.71041 1.90672 1.68307 1.37389 1.46789 1.21545 0.85053 0.98965 1.08002 1.22161 0.96996 0.94268 0.98029 0.88683 1.23366 0.94576 0.98289 0.99777 1.22629 0.85732 1.00223 0.89171 0.86883 1.44593 1.37894 1.07784 1.43351 1.18695 0.89127 0.87619 0.88744 1.67175 1.18312 1.30539 1.12030 1.22399 0.97026 0.86550 0.95210 1.20135 1.02002 0.95834 1.02569 1.24694 0.96744 0.95922 1.00285 1.86544 1.36778 1.47423 1.66290 0.94336 0.81405 0.78382 0.79859 1.21401 0.93074 0.98274 0.91260 1.21673 1.05466 0.92513 1.07256 1.23657 0.97902 1.00391 0.97252 0.92378 0.85507 0.92093 0.85687 0.84838 0.87504 0.89055 0.75399 0.81678 0.88599 0.75532 1.22919 1.20871 0.83747 0.83450 0.92453 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.17 16 2 O -0.37 -0.83 10.56 -51.33 -0.54 -1.37 16 3 C 0.45 1.19 7.96 71.24 0.57 1.76 16 4 O -0.54 -5.11 15.51 21.97 0.34 -4.77 16 5 C -0.10 0.55 5.65 29.85 0.17 0.72 16 6 C -0.10 0.43 3.15 -10.26 -0.03 0.40 16 7 H 0.09 -0.15 7.68 -2.39 -0.02 -0.17 16 8 C -0.12 0.95 7.39 31.13 0.23 1.18 16 9 C 0.13 -0.46 4.03 45.52 0.18 -0.28 16 10 H 0.11 -0.45 6.11 -2.39 -0.01 -0.46 16 11 N -0.71 0.04 5.53 -322.04 -1.78 -1.74 16 12 C 0.39 2.10 7.65 133.07 1.02 3.11 16 13 N -0.56 -4.50 10.39 -193.26 -2.01 -6.50 16 14 C 0.14 0.82 9.84 84.62 0.83 1.65 16 15 C -0.20 -0.90 5.43 -19.76 -0.11 -1.01 16 16 C -0.07 -0.03 2.83 71.24 0.20 0.17 16 17 O -0.56 -1.73 12.75 -148.98 -1.90 -3.63 16 18 Si 0.75 -0.61 29.82 68.60 2.05 1.43 16 19 C -0.01 -0.06 9.76 22.44 0.22 0.16 16 20 C -0.24 -0.92 9.28 22.50 0.21 -0.71 16 21 C -0.15 0.30 7.43 31.12 0.23 0.53 16 22 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 23 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 24 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 25 H 0.13 -1.08 7.84 -2.39 -0.02 -1.10 16 26 H 0.13 -1.33 8.14 -2.38 -0.02 -1.35 16 27 H 0.11 -1.09 8.08 -2.39 -0.02 -1.11 16 28 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 29 H 0.41 -0.69 8.85 -92.71 -0.82 -1.51 16 30 H 0.17 0.26 4.88 -2.91 -0.01 0.24 16 31 H 0.10 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.39 -2.02 8.74 -74.06 -0.65 -2.67 16 33 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 34 H -0.28 -0.76 7.11 99.48 0.71 -0.05 16 35 H 0.14 0.17 8.06 -2.91 -0.02 0.14 16 36 H 0.15 -0.02 6.04 -2.91 -0.02 -0.03 16 37 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.09 -0.18 7.89 -2.39 -0.02 -0.20 16 Total: 0.00 -20.17 320.70 0.74 -19.43 By element: Atomic # 1 Polarization: -11.37 SS G_CDS: -0.33 Total: -11.70 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 4.92 Total: 8.86 kcal Atomic # 7 Polarization: -4.45 SS G_CDS: -3.79 Total: -8.24 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -2.10 Total: -9.78 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: 2.05 Total: 1.43 kcal Total: -20.17 0.74 -19.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17321984_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.987 kcal (2) G-P(sol) polarization free energy of solvation -20.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds