Wall clock time and date at job start Mon Mar 8 2021 10:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47581 * 180.02562 * 5 3 2 7 7 H 1.09005 * 112.84352 * 316.19416 * 6 5 3 8 8 C 1.53779 * 113.61964 * 87.49632 * 6 5 3 9 9 C 1.53775 * 87.08115 * 139.98506 * 8 6 5 10 10 H 1.08998 * 113.69436 * 89.12980 * 9 8 6 11 11 N 1.46499 * 113.61327 * 220.01933 * 9 8 6 12 12 C 1.38606 * 120.00536 * 252.49771 * 11 9 8 13 13 N 1.29683 * 124.95550 * 179.72474 * 12 11 9 14 14 C 1.32121 * 116.86890 * 179.81610 * 13 12 11 15 15 C 1.50699 * 122.71401 * 180.21986 * 14 13 12 16 16 O 1.42898 * 109.47430 * 150.26227 * 15 14 13 17 17 Si 1.86308 * 109.46753 * 30.26803 * 15 14 13 18 18 C 1.33330 * 114.57713 * 0.46904 * 14 13 12 19 19 C 1.50697 * 125.94881 * 179.75604 * 18 14 13 20 20 S 1.70969 * 124.94430 * 0.02562 * 12 11 9 21 21 C 1.53778 * 113.61796 * 185.00026 * 6 5 3 22 22 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 23 23 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 25 25 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 26 26 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 27 27 H 1.09000 * 113.61314 * 254.53688 * 8 6 5 28 28 H 1.09002 * 113.60820 * 25.43566 * 8 6 5 29 29 H 0.97002 * 119.99740 * 72.50105 * 11 9 8 30 30 H 1.08997 * 109.47263 * 270.26958 * 15 14 13 31 31 H 0.96708 * 114.00009 * 300.00938 * 16 15 14 32 32 H 1.48498 * 109.99919 * 179.97438 * 17 15 14 33 33 H 1.48504 * 109.99628 * 301.31754 * 17 15 14 34 34 H 1.09005 * 109.46832 * 179.97438 * 19 18 14 35 35 H 1.08997 * 109.47266 * 299.97384 * 19 18 14 36 36 H 1.09001 * 109.47041 * 59.97656 * 19 18 14 37 37 H 1.09004 * 113.61306 * 334.55926 * 21 6 5 38 38 H 1.08998 * 113.61975 * 105.38331 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.4247 3.3539 -0.6945 8 6 4.1165 3.3494 1.4082 9 6 5.3817 4.0666 0.9087 10 1 5.1855 5.0419 0.4633 11 7 6.4655 4.0990 1.8940 12 6 6.7849 5.2860 2.5344 13 7 7.7192 5.4227 3.4232 14 6 7.8897 6.6311 3.9294 15 6 8.9392 6.9393 4.9660 16 8 9.3645 8.2961 4.8246 17 14 10.3973 5.8038 4.7300 18 6 7.0546 7.5548 3.4529 19 6 7.0196 9.0070 3.8539 20 16 5.9994 6.7819 2.2729 21 6 5.5208 2.9349 -0.1231 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9564 0.7806 0.8893 26 1 3.9558 0.7809 -0.8907 27 1 3.3009 4.0273 1.6600 28 1 4.3111 2.6121 2.1870 29 1 6.9596 3.2896 2.0981 30 1 8.5210 6.7914 5.9617 31 1 9.7481 8.5001 3.9606 32 1 11.4397 6.0980 5.7458 33 1 9.9622 4.3884 4.8431 34 1 6.2336 9.5185 3.2982 35 1 6.8183 9.0842 4.9224 36 1 7.9815 9.4687 3.6311 37 1 6.0995 2.0843 0.2371 38 1 5.8392 3.2768 -1.1079 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17321984_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:14:24 Heat of formation + Delta-G solvation = -40.312131 kcal Electronic energy + Delta-G solvation = -21584.154270 eV Core-core repulsion = 18135.257918 eV Total energy + Delta-G solvation = -3448.896352 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68359 -41.09110 -40.24043 -37.84369 -37.50162 -35.56933 -32.75753 -31.43991 -29.29170 -28.33088 -26.74578 -25.70311 -24.87688 -23.81642 -22.01381 -21.10030 -20.13412 -19.12936 -18.59353 -17.93695 -17.66704 -17.55192 -17.37938 -16.60765 -16.32115 -16.14859 -15.65812 -15.43705 -14.90025 -14.53803 -14.31597 -14.18421 -13.86588 -13.74647 -13.55847 -13.43079 -13.40580 -12.95036 -12.92210 -12.67750 -12.43536 -12.10851 -11.99080 -11.86033 -11.81532 -11.50029 -11.38654 -10.91281 -10.63451 -10.38351 -10.02377 -8.61857 -4.95652 -0.02405 0.16090 0.74329 1.16686 1.30321 1.72622 1.75397 1.83419 1.98936 2.12181 3.36545 3.40071 3.42887 3.54636 3.70608 3.74450 3.87419 4.12322 4.20061 4.24795 4.27046 4.32427 4.43766 4.49343 4.58691 4.67188 4.68175 4.73584 4.82545 4.85524 4.88962 5.00039 5.06261 5.08022 5.28015 5.34779 5.42370 5.70846 6.33073 6.67414 6.70060 6.94392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.542 6.542 5 C -0.098 4.098 6 C -0.095 4.095 7 H 0.096 0.904 8 C -0.152 4.152 9 C 0.124 3.876 10 H 0.107 0.893 11 N -0.675 5.675 12 C 0.310 3.690 13 N -0.572 5.572 14 C 0.053 3.947 15 C -0.032 4.032 16 O -0.540 6.540 17 Si 0.795 3.205 18 C -0.248 4.248 19 C -0.058 4.058 20 S 0.111 5.889 21 C -0.118 4.118 22 H 0.060 0.940 23 H 0.126 0.874 24 H 0.058 0.942 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.417 0.583 30 H 0.111 0.889 31 H 0.395 0.605 32 H -0.294 1.294 33 H -0.300 1.300 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -2.319 -5.378 5.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.431 6.431 5 C -0.135 4.135 6 C -0.114 4.114 7 H 0.114 0.886 8 C -0.192 4.192 9 C 0.019 3.981 10 H 0.125 0.875 11 N -0.315 5.315 12 C -0.061 4.061 13 N -0.300 5.300 14 C -0.077 4.077 15 C -0.145 4.145 16 O -0.347 6.347 17 Si 0.701 3.299 18 C -0.370 4.370 19 C -0.117 4.117 20 S 0.360 5.640 21 C -0.156 4.156 22 H 0.079 0.921 23 H 0.144 0.856 24 H 0.076 0.924 25 H 0.144 0.856 26 H 0.153 0.847 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.256 0.744 30 H 0.128 0.872 31 H 0.245 0.755 32 H -0.222 1.222 33 H -0.227 1.227 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.134 -2.732 -5.066 5.758 hybrid contribution -0.468 -0.137 1.191 1.287 sum -0.603 -2.869 -3.875 4.859 Atomic orbital electron populations 1.23471 0.75329 1.05411 1.02272 1.86512 1.24588 1.33607 1.83807 1.24552 0.93600 0.80821 0.71064 1.90678 1.68313 1.37381 1.46775 1.21537 0.85072 0.98779 1.08151 1.22158 0.96961 0.94462 0.97854 0.88552 1.23681 0.97442 1.00436 0.97614 1.22742 0.85702 1.00425 0.89268 0.87532 1.44127 1.38106 1.06393 1.42880 1.23585 0.94333 0.93813 0.94392 1.65983 1.23363 1.24599 1.16039 1.20247 0.99870 0.87076 1.00543 1.24476 1.01560 0.91382 0.97067 1.86491 1.82086 1.25173 1.40946 0.93180 0.75501 0.74926 0.86287 1.25393 1.02657 1.03043 1.05951 1.20184 1.03647 0.86740 1.01101 1.83910 1.37227 1.00276 1.42621 1.23362 0.94760 0.97863 0.99605 0.92094 0.85557 0.92351 0.85559 0.84697 0.92149 0.88871 0.74416 0.87189 0.75491 1.22191 1.22742 0.91792 0.91461 0.88510 0.86979 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.53 10.57 -51.35 -0.54 -1.07 16 3 C 0.45 0.73 7.96 71.23 0.57 1.30 16 4 O -0.54 -4.59 15.51 21.94 0.34 -4.25 16 5 C -0.10 0.68 5.65 29.85 0.17 0.85 16 6 C -0.10 0.55 3.15 -10.27 -0.03 0.52 16 7 H 0.10 -0.27 7.68 -2.38 -0.02 -0.28 16 8 C -0.15 0.50 7.43 31.12 0.23 0.73 16 9 C 0.12 -0.58 4.23 45.52 0.19 -0.38 16 10 H 0.11 -0.42 7.06 -2.39 -0.02 -0.44 16 11 N -0.68 0.93 5.51 -327.91 -1.81 -0.88 16 12 C 0.31 1.26 8.24 179.32 1.48 2.74 16 13 N -0.57 -4.23 8.95 -189.86 -1.70 -5.93 16 14 C 0.05 0.29 5.91 41.40 0.24 0.54 16 15 C -0.03 -0.11 2.94 71.24 0.21 0.10 16 16 O -0.54 -0.13 10.17 -148.98 -1.52 -1.65 16 17 Si 0.79 2.50 32.09 68.60 2.20 4.71 16 18 C -0.25 -0.95 6.50 24.57 0.16 -0.79 16 19 C -0.06 -0.01 8.91 71.24 0.63 0.63 16 20 S 0.11 0.28 21.69 -56.49 -1.23 -0.95 16 21 C -0.12 1.10 7.39 31.12 0.23 1.33 16 22 H 0.06 -0.06 8.13 -2.39 -0.02 -0.07 16 23 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 24 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 25 H 0.13 -1.28 7.84 -2.38 -0.02 -1.30 16 26 H 0.14 -1.52 8.14 -2.39 -0.02 -1.54 16 27 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.09 -0.36 7.89 -2.39 -0.02 -0.38 16 29 H 0.42 -1.36 8.85 -92.71 -0.82 -2.18 16 30 H 0.11 0.53 7.96 -2.39 -0.02 0.51 16 31 H 0.39 -2.89 8.13 -74.05 -0.60 -3.49 16 32 H -0.29 -2.40 7.11 99.48 0.71 -1.70 16 33 H -0.30 -3.33 7.11 99.48 0.71 -2.62 16 34 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 35 H 0.07 0.12 8.14 -2.39 -0.02 0.11 16 36 H 0.10 -0.28 6.39 -2.39 -0.02 -0.30 16 37 H 0.11 -1.38 8.08 -2.39 -0.02 -1.39 16 38 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 Total: 0.00 -19.14 332.57 0.74 -18.40 By element: Atomic # 1 Polarization: -16.80 SS G_CDS: -0.29 Total: -17.09 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.28 Total: 8.71 kcal Atomic # 7 Polarization: -3.31 SS G_CDS: -3.51 Total: -6.81 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -1.72 Total: -6.97 kcal Atomic # 14 Polarization: 2.50 SS G_CDS: 2.20 Total: 4.71 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.23 Total: -0.95 kcal Total: -19.14 0.74 -18.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17321984_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.908 kcal (2) G-P(sol) polarization free energy of solvation -19.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds