Wall clock time and date at job start Mon Mar 8 2021 10:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99991 * 2 1 4 4 O 1.20832 * 120.00248 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00013 * 180.02562 * 3 2 1 6 6 C 1.53009 * 109.47066 * 180.02562 * 5 3 2 7 7 H 1.09000 * 112.90634 * 43.75141 * 6 5 3 8 8 C 1.53778 * 113.61084 * 175.00046 * 6 5 3 9 9 C 1.53779 * 87.07820 * 139.98333 * 8 6 5 10 10 H 1.09000 * 113.61970 * 89.20295 * 9 8 6 11 11 N 1.46503 * 113.61329 * 220.01794 * 9 8 6 12 12 C 1.39140 * 120.00296 * 205.00235 * 11 9 8 13 13 N 1.32340 * 119.71867 * 0.21656 * 12 11 9 14 14 C 1.32006 * 121.64683 * 180.26877 * 13 12 11 15 15 C 1.37982 * 120.90187 * 359.77403 * 14 13 12 16 16 C 1.50697 * 120.32613 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47579 * 244.98123 * 16 15 14 18 18 Si 1.86299 * 109.47243 * 4.98144 * 16 15 14 19 19 C 1.38904 * 119.34805 * 359.97438 * 15 14 13 20 20 C 1.38439 * 118.48364 * 0.02562 * 19 15 14 21 21 F 1.35104 * 120.47218 * 179.97438 * 20 19 15 22 22 C 1.53772 * 113.61307 * 272.49651 * 6 5 3 23 23 H 1.08998 * 109.47359 * 59.99765 * 1 2 3 24 24 H 1.08994 * 109.46859 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46740 * 299.99692 * 1 2 3 26 26 H 1.08995 * 109.47363 * 60.00477 * 5 3 2 27 27 H 1.09003 * 109.47079 * 300.00383 * 5 3 2 28 28 H 1.08993 * 113.61824 * 25.43001 * 8 6 5 29 29 H 1.09006 * 113.68791 * 254.53939 * 8 6 5 30 30 H 0.97007 * 120.00201 * 24.99754 * 11 9 8 31 31 H 1.08006 * 119.54803 * 179.75710 * 14 13 12 32 32 H 1.09007 * 109.47134 * 124.98088 * 16 15 14 33 33 H 0.96699 * 113.99821 * 59.99352 * 17 16 15 34 34 H 1.48500 * 110.00140 * 179.97438 * 18 16 15 35 35 H 1.48494 * 109.99976 * 301.31813 * 18 16 15 36 36 H 1.07997 * 120.75505 * 179.97438 * 19 15 14 37 37 H 1.09005 * 113.61607 * 105.47555 * 22 6 5 38 38 H 1.09004 * 113.61606 * 334.57052 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 1 3.4252 3.3542 0.6952 8 6 5.5209 2.9347 0.1225 9 6 5.3810 4.0677 -0.9078 10 1 5.1851 5.0425 -0.4611 11 7 6.4640 4.1013 -1.8939 12 6 6.7841 5.2937 -2.5355 13 7 6.1095 6.3952 -2.2476 14 6 6.3776 7.5456 -2.8369 15 6 7.3818 7.6424 -3.7783 16 6 7.6765 8.9622 -4.4435 17 8 7.3837 8.8682 -5.8390 18 14 6.6229 10.2933 -3.6762 19 6 8.1184 6.5115 -4.1067 20 6 7.8150 5.3189 -3.4727 21 9 8.5055 4.1942 -3.7619 22 6 4.1153 3.3511 -1.4071 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9557 0.7810 -0.8908 27 1 3.9564 0.7805 0.8891 28 1 6.0992 2.0846 -0.2392 29 1 5.8413 3.2766 1.1067 30 1 6.9580 3.2921 -2.0995 31 1 5.8029 8.4229 -2.5790 32 1 8.7296 9.2097 -4.3090 33 1 6.4620 8.6500 -6.0336 34 1 6.9046 11.6000 -4.3231 35 1 5.1854 9.9519 -3.8248 36 1 8.9092 6.5614 -4.8406 37 1 3.2996 4.0294 -1.6575 38 1 4.3093 2.6147 -2.1870 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17321984_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:14:26 Heat of formation + Delta-G solvation = -88.805466 kcal Electronic energy + Delta-G solvation = -23402.121054 eV Core-core repulsion = 19548.053270 eV Total energy + Delta-G solvation = -3854.067784 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.95141 -41.71570 -41.38895 -40.08926 -38.08646 -37.51842 -35.68911 -33.26295 -32.12580 -30.78453 -28.41238 -26.73459 -26.55276 -25.42692 -23.78648 -22.89106 -21.70972 -20.69248 -19.27092 -18.63116 -18.54958 -18.34960 -17.74528 -17.58339 -17.48972 -17.01509 -16.34933 -16.16068 -16.06633 -15.81279 -15.50066 -15.15647 -14.65443 -14.50405 -14.35176 -14.03432 -13.90175 -13.50464 -13.44454 -13.35853 -12.94031 -12.88993 -12.65234 -12.13146 -12.04306 -11.89794 -11.81222 -11.48240 -11.36344 -11.10556 -10.74821 -10.65051 -10.53540 -8.75679 -4.89551 -0.08777 0.10373 1.16770 1.31205 1.61967 1.75337 1.98320 2.03571 2.52439 3.02607 3.27306 3.42974 3.47804 3.51570 3.60207 3.78765 3.84587 3.87610 3.91414 4.00121 4.24789 4.26908 4.32714 4.44851 4.47207 4.52990 4.62347 4.68039 4.73060 4.75133 4.81887 4.87405 4.98513 5.07299 5.12136 5.27029 5.40378 5.52617 6.00022 6.22033 6.49161 6.70449 6.97363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.455 3.545 4 O -0.542 6.542 5 C -0.098 4.098 6 C -0.095 4.095 7 H 0.092 0.908 8 C -0.124 4.124 9 C 0.134 3.866 10 H 0.109 0.891 11 N -0.701 5.701 12 C 0.382 3.618 13 N -0.530 5.530 14 C 0.145 3.855 15 C -0.203 4.203 16 C -0.066 4.066 17 O -0.549 6.549 18 Si 0.764 3.236 19 C -0.040 4.040 20 C -0.037 4.037 21 F -0.139 7.139 22 C -0.150 4.150 23 H 0.057 0.943 24 H 0.127 0.873 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.134 0.866 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.418 0.582 31 H 0.180 0.820 32 H 0.130 0.870 33 H 0.386 0.614 34 H -0.300 1.300 35 H -0.278 1.278 36 H 0.156 0.844 37 H 0.052 0.948 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -2.651 3.251 4.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.300 3.700 4 O -0.432 6.432 5 C -0.135 4.135 6 C -0.114 4.114 7 H 0.110 0.890 8 C -0.162 4.162 9 C 0.029 3.971 10 H 0.127 0.873 11 N -0.333 5.333 12 C 0.143 3.857 13 N -0.247 5.247 14 C -0.012 4.012 15 C -0.209 4.209 16 C -0.176 4.176 17 O -0.357 6.357 18 Si 0.669 3.331 19 C -0.066 4.066 20 C -0.063 4.063 21 F -0.119 7.119 22 C -0.189 4.189 23 H 0.076 0.924 24 H 0.145 0.855 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.256 0.744 31 H 0.196 0.804 32 H 0.148 0.852 33 H 0.235 0.765 34 H -0.228 1.228 35 H -0.205 1.205 36 H 0.173 0.827 37 H 0.070 0.930 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.383 -1.737 3.827 4.220 hybrid contribution -0.032 -0.845 -1.951 2.126 sum 0.351 -2.582 1.876 3.211 Atomic orbital electron populations 1.23473 0.75327 1.05437 1.02259 1.86512 1.24596 1.33537 1.83819 1.24549 0.93580 0.80826 0.71054 1.90679 1.68308 1.37431 1.46770 1.21540 0.85088 0.98792 1.08056 1.22132 0.96946 0.94271 0.98014 0.89002 1.23387 0.94647 0.98335 0.99871 1.22475 0.85644 0.99948 0.89039 0.87343 1.44664 1.38201 1.07129 1.43305 1.18645 0.89101 0.88627 0.89319 1.67346 1.29416 0.98403 1.29512 1.22716 0.93426 0.94587 0.90511 1.20881 1.00149 0.97147 1.02697 1.25019 1.09577 0.98901 0.84104 1.86585 1.34061 1.92474 1.22541 0.94119 0.76362 0.73935 0.88666 1.21451 0.98601 0.89809 0.96732 1.18125 0.98694 0.84828 1.04668 1.91469 1.78193 1.49352 1.92838 1.23598 0.97991 1.00080 0.97206 0.92371 0.85469 0.92126 0.85549 0.84805 0.87343 0.89296 0.74369 0.80401 0.85192 0.76461 1.22777 1.20497 0.82657 0.92950 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -0.88 10.57 -51.36 -0.54 -1.42 16 3 C 0.45 1.39 7.96 71.24 0.57 1.95 16 4 O -0.54 -5.50 15.51 21.95 0.34 -5.16 16 5 C -0.10 0.50 5.65 29.85 0.17 0.67 16 6 C -0.09 0.30 3.15 -10.27 -0.03 0.27 16 7 H 0.09 0.03 7.68 -2.39 -0.02 0.01 16 8 C -0.12 0.82 7.39 31.12 0.23 1.05 16 9 C 0.13 -0.21 4.27 45.51 0.19 -0.01 16 10 H 0.11 0.15 7.40 -2.39 -0.02 0.13 16 11 N -0.70 0.26 5.51 -321.79 -1.77 -1.52 16 12 C 0.38 1.35 7.49 133.09 1.00 2.34 16 13 N -0.53 -2.13 9.13 -193.03 -1.76 -3.89 16 14 C 0.14 0.05 9.84 84.61 0.83 0.88 16 15 C -0.20 0.11 5.36 -19.77 -0.11 0.00 16 16 C -0.07 0.16 2.82 71.23 0.20 0.36 16 17 O -0.55 -0.61 12.84 -148.98 -1.91 -2.52 16 18 Si 0.76 -2.71 29.91 68.60 2.05 -0.66 16 19 C -0.04 -0.06 9.82 22.48 0.22 0.16 16 20 C -0.04 -0.13 7.35 22.58 0.17 0.04 16 21 F -0.14 -0.62 16.65 44.97 0.75 0.12 16 22 C -0.15 0.07 7.43 31.12 0.23 0.30 16 23 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 24 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 25 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 26 H 0.13 -1.09 7.84 -2.39 -0.02 -1.11 16 27 H 0.13 -1.28 8.14 -2.39 -0.02 -1.30 16 28 H 0.11 -1.09 8.08 -2.39 -0.02 -1.11 16 29 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 30 H 0.42 -1.38 8.20 -92.70 -0.76 -2.14 16 31 H 0.18 -0.72 4.84 -2.91 -0.01 -0.73 16 32 H 0.13 -0.58 7.96 -2.38 -0.02 -0.60 16 33 H 0.39 -1.59 8.70 -74.06 -0.64 -2.23 16 34 H -0.30 -1.30 7.11 99.48 0.71 -0.59 16 35 H -0.28 -0.03 7.01 99.48 0.70 0.66 16 36 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.09 -0.16 7.90 -2.38 -0.02 -0.18 16 Total: 0.00 -18.17 328.79 1.75 -16.42 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: -0.27 Total: -10.57 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.87 Total: 9.19 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -3.53 Total: -5.40 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -2.12 Total: -9.10 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.75 Total: 0.12 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.05 Total: -0.66 kcal Total: -18.17 1.75 -16.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17321984_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.388 kcal (2) G-P(sol) polarization free energy of solvation -18.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds