Wall clock time and date at job start Mon Mar 8 2021 10:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30171 * 126.79981 * 2 1 4 4 O 1.20926 * 111.60307 * 179.97438 * 3 2 1 5 5 C 1.34042 * 111.56707 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.78010 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47122 * 270.02282 * 6 5 4 8 8 C 1.42898 * 114.00015 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47058 * 29.99819 * 8 7 6 10 10 C 1.52997 * 109.47199 * 149.99795 * 8 7 6 11 11 C 1.53003 * 109.47241 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47087 * 300.00042 * 11 10 8 13 13 H 1.09004 * 109.47434 * 300.00074 * 12 11 10 14 14 N 1.46498 * 109.46963 * 179.97438 * 12 11 10 15 15 C 1.39006 * 119.99551 * 154.72442 * 14 12 11 16 16 N 1.32402 * 119.70089 * 180.27746 * 15 14 12 17 17 C 1.31978 * 121.61929 * 180.02562 * 16 15 14 18 18 C 1.38015 * 120.85482 * 359.97288 * 17 16 15 19 19 C 1.50705 * 120.33078 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.46844 * 120.00707 * 19 18 17 21 21 Si 1.86295 * 109.47503 * 0.02562 * 19 18 17 22 22 C 1.38882 * 119.33328 * 0.03167 * 18 17 16 23 23 C 1.38293 * 118.50463 * 359.72042 * 22 18 17 24 24 C 1.52997 * 109.47114 * 59.99880 * 12 11 10 25 25 C 1.52999 * 109.46999 * 269.99757 * 8 7 6 26 26 C 1.35450 * 106.44399 * 0.23598 * 5 4 3 27 27 H 1.09008 * 109.47163 * 90.02075 * 1 2 3 28 28 H 1.08991 * 109.47313 * 210.02006 * 1 2 3 29 29 H 1.09002 * 109.47318 * 330.02782 * 1 2 3 30 30 H 1.08992 * 109.47537 * 150.01515 * 6 5 4 31 31 H 1.09007 * 109.46697 * 30.01774 * 6 5 4 32 32 H 1.09004 * 109.46812 * 60.00079 * 10 8 7 33 33 H 1.08997 * 109.47293 * 299.99975 * 10 8 7 34 34 H 1.08997 * 109.46962 * 180.02562 * 11 10 8 35 35 H 1.08995 * 109.46928 * 60.00077 * 11 10 8 36 36 H 0.97001 * 120.00384 * 335.00737 * 14 12 11 37 37 H 1.08000 * 119.56658 * 180.02562 * 17 16 15 38 38 H 1.09006 * 109.47112 * 240.00237 * 19 18 17 39 39 H 0.96704 * 113.99795 * 179.97438 * 20 19 18 40 40 H 1.48504 * 109.99786 * 59.99799 * 21 19 18 41 41 H 1.48492 * 110.00230 * 181.31790 * 21 19 18 42 42 H 1.08007 * 120.74804 * 180.02562 * 22 18 17 43 43 H 1.08000 * 120.45294 * 180.29196 * 23 22 18 44 44 H 1.09009 * 109.47238 * 59.99946 * 24 12 11 45 45 H 1.08997 * 109.47293 * 179.97438 * 24 12 11 46 46 H 1.08995 * 109.47266 * 299.99934 * 25 8 7 47 47 H 1.09000 * 109.47204 * 59.99992 * 25 8 7 48 48 H 1.08005 * 128.00628 * 179.74353 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 8 5.3132 -1.6101 -1.3470 8 6 6.5421 -2.3306 -1.4599 9 1 6.6551 -2.9929 -0.6016 10 6 6.5310 -3.1597 -2.7457 11 6 7.8470 -3.9306 -2.8669 12 6 9.0148 -2.9430 -2.9070 13 1 8.9013 -2.2807 -3.7653 14 7 10.2749 -3.6812 -3.0224 15 6 11.3880 -3.0716 -3.5895 16 7 12.5224 -3.7461 -3.6959 17 6 13.6022 -3.2045 -4.2274 18 6 13.5859 -1.9060 -4.6949 19 6 14.8256 -1.2994 -5.3002 20 8 14.5574 -0.9150 -6.6501 21 14 16.2057 -2.5505 -5.2738 22 6 12.4156 -1.1640 -4.6018 23 6 11.2988 -1.7600 -4.0449 24 6 9.0260 -2.1139 -1.6211 25 6 7.7103 -1.3434 -1.4997 26 6 2.3539 -1.1320 -0.0057 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3633 -0.8897 0.5141 29 1 -0.3634 0.8902 0.5134 30 1 4.7650 -2.3212 0.5137 31 1 5.6659 -0.7861 0.5146 32 1 6.4179 -2.4974 -3.6040 33 1 5.6988 -3.8630 -2.7174 34 1 7.8392 -4.5209 -3.7832 35 1 7.9605 -4.5928 -2.0086 36 1 10.3314 -4.5968 -2.7068 37 1 14.5100 -3.7852 -4.2982 38 1 15.1193 -0.4219 -4.7240 39 1 15.3129 -0.5157 -7.1028 40 1 15.8174 -3.7515 -6.0563 41 1 17.4427 -1.9543 -5.8389 42 1 12.3771 -0.1460 -4.9607 43 1 10.3710 -1.2135 -3.9613 44 1 9.1395 -2.7762 -0.7627 45 1 9.8582 -1.4106 -1.6495 46 1 7.5973 -0.6812 -2.3580 47 1 7.7182 -0.7527 -0.5836 48 1 2.0709 -2.1743 -0.0114 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17322388_13915762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:45 Heat of formation + Delta-G solvation = 29.210302 kcal Electronic energy + Delta-G solvation = -29295.332461 eV Core-core repulsion = 25127.345152 eV Total energy + Delta-G solvation = -4167.987310 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -45.99231 -41.49640 -40.35945 -38.54155 -37.77292 -35.82531 -35.53262 -33.67006 -33.33150 -31.93898 -31.62465 -29.64525 -29.39499 -27.50244 -26.07994 -24.91287 -24.14263 -23.65580 -23.21922 -22.08795 -21.35075 -20.91835 -18.84014 -18.74184 -18.51067 -18.37872 -18.05908 -17.66502 -16.86372 -16.57361 -16.29947 -16.13710 -15.73574 -15.49224 -15.37614 -15.04695 -14.76271 -14.60733 -14.25803 -14.16107 -14.09944 -14.08658 -13.94103 -13.89926 -13.79013 -13.38706 -13.18654 -13.14605 -12.67102 -12.34661 -12.25599 -12.16525 -12.10799 -11.96296 -11.60135 -11.49228 -11.08962 -11.01979 -10.74904 -10.59890 -10.58802 -10.45569 -10.30305 -8.67433 -4.92092 0.22478 0.29466 0.40677 1.16745 1.32751 1.60079 1.95947 1.96342 2.09683 2.79196 2.82172 3.22620 3.44383 3.44453 3.56664 3.66703 3.72244 3.84163 3.95461 3.97399 4.03987 4.07995 4.10987 4.13295 4.23062 4.26159 4.28080 4.36124 4.42812 4.43885 4.48697 4.50068 4.56054 4.64177 4.69837 4.76289 4.79412 4.85511 4.87437 4.93629 5.03067 5.10044 5.15538 5.17052 5.19693 5.25513 5.30124 5.39115 5.54804 6.04745 6.15935 6.56676 6.62954 7.15300 7.21235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.003 3.997 3 N -0.400 5.400 4 O 0.084 5.916 5 C -0.039 4.039 6 C 0.143 3.857 7 O -0.395 6.395 8 C 0.090 3.910 9 H 0.087 0.913 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.153 3.847 13 H 0.079 0.921 14 N -0.713 5.713 15 C 0.397 3.603 16 N -0.563 5.563 17 C 0.145 3.855 18 C -0.200 4.200 19 C -0.067 4.067 20 O -0.560 6.560 21 Si 0.753 3.247 22 C -0.014 4.014 23 C -0.243 4.243 24 C -0.124 4.124 25 C -0.137 4.137 26 C -0.208 4.208 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.408 0.592 37 H 0.166 0.834 38 H 0.096 0.904 39 H 0.394 0.606 40 H -0.301 1.301 41 H -0.282 1.282 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 -3.123 4.135 5.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.155 4.155 3 N -0.107 5.107 4 O 0.019 5.981 5 C -0.102 4.102 6 C 0.066 3.934 7 O -0.315 6.315 8 C 0.033 3.967 9 H 0.105 0.895 10 C -0.147 4.147 11 C -0.153 4.153 12 C 0.048 3.952 13 H 0.097 0.903 14 N -0.345 5.345 15 C 0.161 3.839 16 N -0.280 5.280 17 C -0.011 4.011 18 C -0.205 4.205 19 C -0.176 4.176 20 O -0.370 6.370 21 Si 0.659 3.341 22 C -0.040 4.040 23 C -0.267 4.267 24 C -0.163 4.163 25 C -0.176 4.176 26 C -0.229 4.229 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.182 0.818 38 H 0.114 0.886 39 H 0.245 0.755 40 H -0.229 1.229 41 H -0.209 1.209 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.471 -3.176 3.974 5.109 hybrid contribution 0.134 0.659 -1.248 1.418 sum -0.337 -2.517 2.726 3.725 Atomic orbital electron populations 1.20336 0.83916 1.04928 1.04359 1.24287 1.00628 0.88828 1.01721 1.73886 0.89910 1.25729 1.21187 1.84785 1.21522 1.24020 1.67751 1.24615 0.98955 0.83242 1.03438 1.20890 0.88652 0.98529 0.85325 1.87975 1.41019 1.77178 1.25363 1.22303 0.82330 0.92530 0.99507 0.89526 1.21485 0.97603 0.98689 0.96954 1.21679 0.92008 0.97510 1.04061 1.21140 0.81947 0.93828 0.98302 0.90294 1.44630 1.07709 1.16838 1.65318 1.18621 0.86990 0.89104 0.89211 1.67175 0.99627 1.38547 1.22672 1.22384 0.95370 0.91599 0.91793 1.20124 0.97137 0.96207 1.07065 1.24688 1.02038 1.06677 0.84212 1.86544 1.42043 1.82756 1.25668 0.94351 0.73912 0.75754 0.90127 1.21393 0.90942 1.00089 0.91551 1.21646 1.01248 0.95580 1.08268 1.21902 0.97137 0.99137 0.98108 1.21976 0.93794 0.98544 1.03262 1.22898 0.90482 1.02253 1.07309 0.89260 0.87570 0.90787 0.86680 0.89579 0.91652 0.89988 0.90437 0.89544 0.75567 0.81754 0.88628 0.75544 1.22906 1.20866 0.83816 0.83548 0.90504 0.91762 0.91664 0.90750 0.78115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.12 10.47 71.24 0.75 0.86 16 2 C 0.00 0.02 7.33 43.58 0.32 0.34 16 3 N -0.40 -4.28 12.07 -49.56 -0.60 -4.87 16 4 O 0.08 0.74 11.20 71.61 0.80 1.54 16 5 C -0.04 -0.09 7.12 25.04 0.18 0.09 16 6 C 0.14 -0.62 6.31 71.24 0.45 -0.18 16 7 O -0.40 0.43 9.97 -148.98 -1.49 -1.05 16 8 C 0.09 -0.53 2.61 30.59 0.08 -0.45 16 9 H 0.09 -0.83 7.79 -2.39 -0.02 -0.85 16 10 C -0.11 0.65 5.57 30.59 0.17 0.82 16 11 C -0.11 0.84 5.39 30.59 0.16 1.00 16 12 C 0.15 -0.73 2.14 44.99 0.10 -0.63 16 13 H 0.08 -0.26 6.43 -2.39 -0.02 -0.28 16 14 N -0.71 0.76 5.24 -324.54 -1.70 -0.95 16 15 C 0.40 1.69 7.63 133.06 1.02 2.71 16 16 N -0.56 -4.03 10.39 -193.26 -2.01 -6.04 16 17 C 0.15 0.73 9.84 84.62 0.83 1.56 16 18 C -0.20 -0.78 5.43 -19.76 -0.11 -0.88 16 19 C -0.07 0.00 2.83 71.24 0.20 0.20 16 20 O -0.56 -1.49 12.75 -148.98 -1.90 -3.39 16 21 Si 0.75 -0.82 29.82 68.60 2.05 1.23 16 22 C -0.01 -0.05 9.77 22.44 0.22 0.17 16 23 C -0.24 -0.67 8.86 22.50 0.20 -0.47 16 24 C -0.12 0.69 5.43 30.58 0.17 0.86 16 25 C -0.14 0.73 5.53 30.58 0.17 0.90 16 26 C -0.21 -0.16 11.06 22.40 0.25 0.09 16 27 H 0.09 -0.26 8.14 -2.38 -0.02 -0.28 16 28 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.12 -1.18 8.08 -2.39 -0.02 -1.20 16 31 H 0.09 -0.57 7.87 -2.38 -0.02 -0.59 16 32 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H 0.41 -0.94 8.73 -92.71 -0.81 -1.75 16 37 H 0.17 0.18 4.88 -2.91 -0.01 0.16 16 38 H 0.10 -0.41 7.96 -2.38 -0.02 -0.43 16 39 H 0.39 -2.14 8.74 -74.05 -0.65 -2.79 16 40 H -0.30 -2.06 7.11 99.48 0.71 -1.35 16 41 H -0.28 -0.70 7.11 99.48 0.71 0.01 16 42 H 0.14 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.15 -0.12 6.10 -2.91 -0.02 -0.14 16 44 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 45 H 0.06 -0.21 7.71 -2.39 -0.02 -0.23 16 46 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.07 -0.42 7.87 -2.39 -0.02 -0.44 16 48 H 0.20 -1.22 8.06 -2.91 -0.02 -1.24 16 Total: 0.00 -21.34 390.54 -0.12 -21.47 By element: Atomic # 1 Polarization: -14.50 SS G_CDS: -0.42 Total: -14.92 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.15 Total: 6.99 kcal Atomic # 7 Polarization: -7.55 SS G_CDS: -4.31 Total: -11.86 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -2.58 Total: -2.90 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.05 Total: 1.23 kcal Total: -21.34 -0.12 -21.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17322388_13915762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.675 kcal (2) G-P(sol) polarization free energy of solvation -21.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds