Wall clock time and date at job start Mon Mar 8 2021 10:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30177 * 126.80010 * 2 1 4 4 O 1.20925 * 111.60152 * 179.68979 * 3 2 1 5 5 C 1.34046 * 111.56475 * 0.45092 * 4 3 2 6 6 C 1.50699 * 126.77058 * 179.82827 * 5 4 3 7 7 O 1.42902 * 109.47251 * 269.68399 * 6 5 4 8 8 C 1.42905 * 114.00182 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46838 * 329.99818 * 8 7 6 10 10 C 1.52997 * 109.47266 * 89.99755 * 8 7 6 11 11 C 1.52996 * 109.47165 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46972 * 300.00293 * 11 10 8 13 13 H 1.09000 * 109.46986 * 299.99742 * 12 11 10 14 14 N 1.46496 * 109.47428 * 180.02562 * 12 11 10 15 15 C 1.38616 * 120.00186 * 84.99175 * 14 12 11 16 16 N 1.29681 * 124.95126 * 0.03457 * 15 14 12 17 17 C 1.32115 * 116.87001 * 179.97438 * 16 15 14 18 18 C 1.33329 * 114.57810 * 359.97438 * 17 16 15 19 19 C 1.50701 * 125.95009 * 179.97438 * 18 17 16 20 20 O 1.42896 * 109.47135 * 300.00055 * 19 18 17 21 21 Si 1.86299 * 109.46887 * 180.02562 * 19 18 17 22 22 S 1.70966 * 124.94871 * 179.72128 * 15 14 12 23 23 C 1.52997 * 109.47415 * 59.99860 * 12 11 10 24 24 C 1.52999 * 109.46735 * 210.00182 * 8 7 6 25 25 C 1.35442 * 106.44806 * 359.56581 * 5 4 3 26 26 H 1.09001 * 109.47110 * 270.04012 * 1 2 3 27 27 H 1.08992 * 109.47309 * 30.04166 * 1 2 3 28 28 H 1.09002 * 109.46752 * 150.04672 * 1 2 3 29 29 H 1.09009 * 109.47010 * 149.68722 * 6 5 4 30 30 H 1.08997 * 109.47542 * 29.68663 * 6 5 4 31 31 H 1.09000 * 109.47140 * 60.00248 * 10 8 7 32 32 H 1.09001 * 109.47375 * 300.00231 * 10 8 7 33 33 H 1.08992 * 109.47534 * 180.02562 * 11 10 8 34 34 H 1.08996 * 109.47134 * 59.99508 * 11 10 8 35 35 H 0.97005 * 119.99981 * 264.99973 * 14 12 11 36 36 H 1.08003 * 122.71332 * 179.97438 * 17 16 15 37 37 H 1.08994 * 109.46982 * 60.00500 * 19 18 17 38 38 H 0.96700 * 114.00500 * 299.99798 * 20 19 18 39 39 H 1.48499 * 110.00213 * 180.02562 * 21 19 18 40 40 H 1.48501 * 110.00136 * 301.32222 * 21 19 18 41 41 H 1.09001 * 109.46922 * 180.02562 * 23 12 11 42 42 H 1.09000 * 109.47140 * 59.99976 * 23 12 11 43 43 H 1.08993 * 109.47839 * 59.99877 * 24 8 7 44 44 H 1.09000 * 109.47160 * 299.99439 * 24 8 7 45 45 H 1.08006 * 128.00696 * 180.24402 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7253 0.0061 5 6 3.6024 -0.6068 0.0012 6 6 4.9022 -1.3695 0.0026 7 8 5.3139 -1.6116 -1.3442 8 6 6.5424 -2.3331 -1.4558 9 1 7.1749 -2.1085 -0.5970 10 6 6.2503 -3.8344 -1.4953 11 6 7.5656 -4.6069 -1.6141 12 6 8.2856 -4.1934 -2.8992 13 1 7.6534 -4.4180 -3.7582 14 7 9.5447 -4.9334 -3.0133 15 6 9.5551 -6.2015 -3.5731 16 7 8.5104 -6.8223 -4.0258 17 6 8.7037 -8.0289 -4.5278 18 6 9.9699 -8.4457 -4.4979 19 6 10.4764 -9.7733 -4.9997 20 8 9.8320 -10.8299 -4.2855 21 14 12.3173 -9.8766 -4.7329 22 16 10.9482 -7.1720 -3.7740 23 6 8.5777 -2.6921 -2.8597 24 6 7.2618 -1.9194 -2.7411 25 6 2.3540 -1.1320 0.0008 26 1 -0.3633 0.0007 1.0277 27 1 -0.3633 0.8895 -0.5144 28 1 -0.3633 -0.8904 -0.5131 29 1 4.7648 -2.3207 0.5171 30 1 5.6657 -0.7855 0.5165 31 1 5.6178 -4.0590 -2.3541 32 1 5.7377 -4.1291 -0.5796 33 1 7.3575 -5.6764 -1.6427 34 1 8.1977 -4.3822 -0.7551 35 1 10.3712 -4.5361 -2.6971 36 1 7.9011 -8.6293 -4.9300 37 1 10.2573 -9.8672 -6.0633 38 1 9.9838 -10.8091 -3.3307 39 1 12.8294 -11.1811 -5.2242 40 1 12.9969 -8.7643 -5.4442 41 1 9.0902 -2.3974 -3.7754 42 1 9.2099 -2.4674 -2.0006 43 1 7.4699 -0.8499 -2.7130 44 1 6.6293 -2.1440 -3.5999 45 1 2.0710 -2.1744 0.0011 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17322388_15704118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:49 Heat of formation + Delta-G solvation = 35.003716 kcal Electronic energy + Delta-G solvation = -27767.910242 eV Core-core repulsion = 23689.326400 eV Total energy + Delta-G solvation = -4078.583842 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.99860 -40.97296 -40.22500 -38.47131 -37.68497 -35.82589 -35.44092 -33.50635 -31.85747 -31.46013 -29.70357 -29.62541 -27.53858 -26.47803 -24.65229 -24.17825 -23.70974 -23.06741 -21.46898 -21.06427 -20.64648 -19.60522 -18.84457 -18.41545 -18.16266 -17.67531 -17.13446 -16.62253 -16.45036 -16.31780 -16.26158 -15.78132 -15.59634 -15.22256 -14.97953 -14.90459 -14.40481 -14.26116 -14.16809 -14.15109 -14.03532 -13.93096 -13.44546 -13.19699 -13.18256 -12.83983 -12.55713 -12.46247 -12.37036 -12.17658 -12.10121 -11.99406 -11.60733 -11.50525 -11.08687 -11.02687 -10.78494 -10.59971 -10.45050 -10.26727 -10.14437 -8.72154 -5.10896 -0.04106 0.03682 0.28726 0.67811 1.15876 1.27413 1.58133 1.89123 1.95473 1.99278 2.18758 2.81834 3.21535 3.43456 3.51442 3.62987 3.67305 3.72919 3.93847 3.96559 4.01869 4.09266 4.16885 4.22033 4.27151 4.29757 4.41998 4.43041 4.48369 4.48783 4.55107 4.63899 4.65892 4.72484 4.81947 4.84655 4.86260 4.94451 5.06180 5.09356 5.15353 5.18179 5.18702 5.28908 5.38711 5.86406 6.15361 6.20272 6.73215 7.04045 7.20340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.004 3.996 3 N -0.398 5.398 4 O 0.086 5.914 5 C -0.038 4.038 6 C 0.143 3.857 7 O -0.397 6.397 8 C 0.091 3.909 9 H 0.089 0.911 10 C -0.133 4.133 11 C -0.117 4.117 12 C 0.161 3.839 13 H 0.067 0.933 14 N -0.680 5.680 15 C 0.318 3.682 16 N -0.577 5.577 17 C 0.104 3.896 18 C -0.310 4.310 19 C -0.014 4.014 20 O -0.551 6.551 21 Si 0.731 3.269 22 S 0.114 5.886 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.210 4.210 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.425 0.575 36 H 0.175 0.825 37 H 0.117 0.883 38 H 0.395 0.605 39 H -0.272 1.272 40 H -0.269 1.269 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 -1.726 5.133 6.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 N -0.106 5.106 4 O 0.021 5.979 5 C -0.102 4.102 6 C 0.066 3.934 7 O -0.317 6.317 8 C 0.034 3.966 9 H 0.107 0.893 10 C -0.172 4.172 11 C -0.156 4.156 12 C 0.054 3.946 13 H 0.086 0.914 14 N -0.320 5.320 15 C -0.053 4.053 16 N -0.303 5.303 17 C -0.047 4.047 18 C -0.433 4.433 19 C -0.127 4.127 20 O -0.358 6.358 21 Si 0.635 3.365 22 S 0.363 5.637 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.231 4.231 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.192 0.808 37 H 0.134 0.866 38 H 0.245 0.755 39 H -0.198 1.198 40 H -0.195 1.195 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.384 -0.108 4.271 6.122 hybrid contribution -1.155 -1.032 -0.709 1.704 sum 3.229 -1.141 3.562 4.941 Atomic orbital electron populations 1.20334 0.83916 1.04760 1.04523 1.24277 1.00627 0.88794 1.01739 1.73882 0.89904 1.25643 1.21161 1.84783 1.21509 1.23914 1.67720 1.24597 0.98930 0.83266 1.03376 1.20887 0.88918 0.98298 0.85290 1.87979 1.41701 1.76535 1.25474 1.22308 0.84428 0.90383 0.99443 0.89322 1.21941 0.97576 0.94638 1.03009 1.21793 0.96184 0.99740 0.97906 1.21033 0.84207 0.91029 0.98319 0.91447 1.44190 1.11639 1.11499 1.64698 1.23954 0.92936 0.92625 0.95749 1.66480 1.30556 1.10646 1.22661 1.21414 0.96242 0.90165 0.96871 1.25686 0.96552 1.03503 1.17608 1.24221 1.08709 0.81994 0.97812 1.86475 1.76057 1.47814 1.25496 0.94120 0.72726 0.79209 0.90483 1.83810 1.09870 1.09787 1.60218 1.21723 0.97499 0.91679 1.04364 1.21504 0.95578 1.00930 0.96977 1.22883 0.90623 1.02195 1.07428 0.88827 0.90880 0.87905 0.87118 0.88989 0.92393 0.90397 0.92719 0.90043 0.73537 0.80798 0.86614 0.75500 1.19808 1.19461 0.90220 0.88819 0.90152 0.92153 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.07 10.47 71.24 0.75 0.81 16 2 C 0.00 0.02 7.33 43.58 0.32 0.34 16 3 N -0.40 -4.40 12.07 -49.55 -0.60 -5.00 16 4 O 0.09 0.77 11.20 71.58 0.80 1.57 16 5 C -0.04 -0.11 7.12 25.04 0.18 0.07 16 6 C 0.14 -0.53 6.31 71.24 0.45 -0.08 16 7 O -0.40 -0.02 9.97 -148.98 -1.49 -1.51 16 8 C 0.09 -0.44 2.61 30.59 0.08 -0.36 16 9 H 0.09 -0.80 7.79 -2.39 -0.02 -0.82 16 10 C -0.13 0.56 5.54 30.59 0.17 0.73 16 11 C -0.12 0.50 5.51 30.59 0.17 0.67 16 12 C 0.16 -0.59 2.58 44.99 0.12 -0.47 16 13 H 0.07 0.14 7.76 -2.39 -0.02 0.12 16 14 N -0.68 2.64 5.23 -330.41 -1.73 0.91 16 15 C 0.32 0.40 8.06 179.32 1.45 1.84 16 16 N -0.58 -3.24 9.90 -202.02 -2.00 -5.24 16 17 C 0.10 0.43 11.22 83.54 0.94 1.36 16 18 C -0.31 -0.37 5.74 24.58 0.14 -0.23 16 19 C -0.01 0.00 2.99 71.24 0.21 0.22 16 20 O -0.55 -0.05 12.87 -148.98 -1.92 -1.97 16 21 Si 0.73 -1.22 31.05 68.60 2.13 0.91 16 22 S 0.11 -0.15 20.57 -56.49 -1.16 -1.31 16 23 C -0.11 0.85 5.39 30.61 0.17 1.01 16 24 C -0.11 0.49 5.58 30.61 0.17 0.66 16 25 C -0.21 -0.36 11.06 22.40 0.25 -0.12 16 26 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.11 -0.98 7.87 -2.38 -0.02 -1.00 16 30 H 0.09 -0.65 8.09 -2.39 -0.02 -0.67 16 31 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.08 -0.46 7.87 -2.39 -0.02 -0.48 16 33 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.43 -3.84 8.73 -92.70 -0.81 -4.65 16 36 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.12 0.05 7.96 -2.39 -0.02 0.03 16 38 H 0.39 -2.98 8.70 -74.06 -0.64 -3.62 16 39 H -0.27 -1.19 7.11 99.48 0.71 -0.48 16 40 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 41 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 43 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.20 -0.91 8.06 -2.91 -0.02 -0.93 16 Total: 0.00 -20.03 386.88 -0.81 -20.84 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -0.39 Total: -15.67 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.55 Total: 6.46 kcal Atomic # 7 Polarization: -5.00 SS G_CDS: -4.33 Total: -9.32 kcal Atomic # 8 Polarization: 0.70 SS G_CDS: -2.60 Total: -1.90 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.13 Total: 0.91 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.16 Total: -1.31 kcal Total: -20.03 -0.81 -20.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17322388_15704118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.843 kcal (2) G-P(sol) polarization free energy of solvation -20.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds