Wall clock time and date at job start Mon Mar 8 2021 10:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30177 * 126.79988 * 2 1 4 4 O 1.20922 * 111.60178 * 180.02562 * 3 2 1 5 5 C 1.34045 * 111.56832 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.77616 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46633 * 270.02424 * 6 5 4 8 8 C 1.42903 * 113.99808 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.47056 * 329.99647 * 8 7 6 10 10 C 1.52997 * 109.47236 * 89.99896 * 8 7 6 11 11 C 1.52998 * 109.47213 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47290 * 299.99972 * 11 10 8 13 13 H 1.08997 * 109.47693 * 300.00162 * 12 11 10 14 14 N 1.46496 * 109.47491 * 179.97438 * 12 11 10 15 15 C 1.38611 * 119.99896 * 84.99898 * 14 12 11 16 16 N 1.29690 * 124.95554 * 180.02562 * 15 14 12 17 17 C 1.32115 * 116.87311 * 179.97438 * 16 15 14 18 18 C 1.50691 * 122.71429 * 180.02562 * 17 16 15 19 19 O 1.42907 * 109.46699 * 293.54579 * 18 17 16 20 20 Si 1.86297 * 109.47254 * 53.54234 * 18 17 16 21 21 C 1.33332 * 114.57619 * 0.02562 * 17 16 15 22 22 C 1.50699 * 125.95115 * 179.97438 * 21 17 16 23 23 S 1.70971 * 124.94926 * 359.70099 * 15 14 12 24 24 C 1.53007 * 109.46891 * 60.00268 * 12 11 10 25 25 C 1.52997 * 109.47055 * 210.00196 * 8 7 6 26 26 C 1.35447 * 106.44479 * 0.24058 * 5 4 3 27 27 H 1.08999 * 109.46945 * 89.97425 * 1 2 3 28 28 H 1.08994 * 109.46779 * 209.97431 * 1 2 3 29 29 H 1.08998 * 109.46924 * 329.97534 * 1 2 3 30 30 H 1.09000 * 109.47260 * 150.02735 * 6 5 4 31 31 H 1.09000 * 109.47294 * 30.02369 * 6 5 4 32 32 H 1.08999 * 109.47037 * 299.99891 * 10 8 7 33 33 H 1.09000 * 109.46877 * 59.99717 * 10 8 7 34 34 H 1.09004 * 109.47483 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.47394 * 60.00078 * 11 10 8 36 36 H 0.97002 * 120.00702 * 265.00471 * 14 12 11 37 37 H 1.08995 * 109.47561 * 173.54758 * 18 17 16 38 38 H 0.96700 * 113.99975 * 60.00589 * 19 18 17 39 39 H 1.48503 * 110.00283 * 180.02562 * 20 18 17 40 40 H 1.48500 * 110.00069 * 301.32299 * 20 18 17 41 41 H 1.09005 * 109.46829 * 84.88607 * 22 21 17 42 42 H 1.08999 * 109.47367 * 204.88132 * 22 21 17 43 43 H 1.08996 * 109.47273 * 324.88747 * 22 21 17 44 44 H 1.08999 * 109.46959 * 180.02562 * 24 12 11 45 45 H 1.08993 * 109.47332 * 59.99879 * 24 12 11 46 46 H 1.09002 * 109.47445 * 299.99451 * 25 8 7 47 47 H 1.08999 * 109.47852 * 60.00039 * 25 8 7 48 48 H 1.07998 * 128.00506 * 179.73045 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 -0.0004 6 6 4.9022 -1.3695 -0.0014 7 8 5.3120 -1.6104 -1.3490 8 6 6.5402 -2.3319 -1.4629 9 1 7.1740 -2.1080 -0.6048 10 6 6.2480 -3.8331 -1.5034 11 6 7.5630 -4.6055 -1.6260 12 6 8.2802 -4.1907 -2.9122 13 1 7.6462 -4.4144 -3.7702 14 7 9.5396 -4.9299 -3.0293 15 6 9.5497 -6.1975 -3.5900 16 7 10.6057 -6.9352 -3.7400 17 6 10.4315 -8.1215 -4.2950 18 6 11.5661 -9.0846 -4.5311 19 8 12.4569 -8.5410 -5.5074 20 14 12.4875 -9.3620 -2.9358 21 6 9.1706 -8.3976 -4.6292 22 6 8.6848 -9.6695 -5.2751 23 16 8.1705 -7.0195 -4.1775 24 6 8.5725 -2.6894 -2.8717 25 6 7.2580 -1.9171 -2.7488 26 6 2.3540 -1.1320 -0.0051 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 4.7655 -2.3211 0.5123 31 1 5.6664 -0.7860 0.5120 32 1 5.7367 -4.1286 -0.5873 33 1 5.6142 -4.0568 -2.3616 34 1 7.3548 -5.6751 -1.6553 35 1 8.1971 -4.3819 -0.7681 36 1 10.3665 -4.5323 -2.7145 37 1 11.1683 -10.0336 -4.8906 38 1 12.8495 -7.6945 -5.2535 39 1 13.6095 -10.3097 -3.1554 40 1 13.0077 -8.0708 -2.4187 41 1 8.4979 -10.4191 -4.5060 42 1 7.7622 -9.4707 -5.8204 43 1 9.4428 -10.0388 -5.9658 44 1 9.0830 -2.3938 -3.7882 45 1 9.2066 -2.4657 -2.0138 46 1 6.6243 -2.1409 -3.6071 47 1 7.4663 -0.8475 -2.7201 48 1 2.0710 -2.1743 -0.0105 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17322388_15704122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:52 Heat of formation + Delta-G solvation = 29.332002 kcal Electronic energy + Delta-G solvation = -29941.050599 eV Core-core repulsion = 25706.683194 eV Total energy + Delta-G solvation = -4234.367405 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.145 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -45.99011 -41.11750 -40.48189 -38.61012 -37.59131 -35.82809 -35.60724 -33.64466 -32.91734 -31.89903 -29.92821 -29.63332 -28.64589 -27.40756 -25.68125 -24.61915 -24.16690 -23.66800 -22.98624 -21.52655 -21.16734 -20.28228 -19.13297 -18.83825 -18.42191 -18.07208 -17.69107 -17.43266 -16.87920 -16.49316 -16.38188 -16.14681 -15.76679 -15.53898 -15.28413 -15.08875 -14.45986 -14.33006 -14.24182 -14.22180 -14.17027 -14.00428 -13.89102 -13.80141 -13.55689 -13.41871 -13.23821 -13.20103 -12.97465 -12.50761 -12.49839 -12.28454 -12.17875 -12.12942 -11.85555 -11.62823 -11.51468 -11.03323 -11.01727 -10.71229 -10.59251 -10.51023 -10.43527 -10.02502 -8.62391 -4.96799 -0.01047 0.17748 0.29793 0.75751 1.17031 1.25637 1.67979 1.78369 1.88931 1.99126 2.07895 2.80835 3.22931 3.31174 3.44118 3.51837 3.62765 3.66732 3.95892 3.96979 4.03304 4.07640 4.09120 4.16784 4.22515 4.24730 4.28058 4.35467 4.42448 4.45336 4.51233 4.55765 4.62160 4.64593 4.73022 4.81783 4.85865 4.87189 4.88066 4.94651 5.01536 5.05719 5.11576 5.13292 5.20000 5.22483 5.30535 5.33232 5.66870 6.14778 6.32341 6.34731 6.92602 7.21653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.003 3.997 3 N -0.399 5.399 4 O 0.085 5.915 5 C -0.039 4.039 6 C 0.143 3.857 7 O -0.395 6.395 8 C 0.089 3.911 9 H 0.084 0.916 10 C -0.134 4.134 11 C -0.128 4.128 12 C 0.150 3.850 13 H 0.078 0.922 14 N -0.686 5.686 15 C 0.309 3.691 16 N -0.576 5.576 17 C 0.057 3.943 18 C -0.044 4.044 19 O -0.543 6.543 20 Si 0.777 3.223 21 C -0.251 4.251 22 C -0.074 4.074 23 S 0.123 5.877 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.208 4.208 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.140 0.860 38 H 0.383 0.617 39 H -0.290 1.290 40 H -0.297 1.297 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 -3.733 3.601 6.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.155 4.155 3 N -0.107 5.107 4 O 0.019 5.981 5 C -0.103 4.103 6 C 0.066 3.934 7 O -0.315 6.315 8 C 0.032 3.968 9 H 0.102 0.898 10 C -0.172 4.172 11 C -0.167 4.167 12 C 0.045 3.955 13 H 0.096 0.904 14 N -0.325 5.325 15 C -0.063 4.063 16 N -0.303 5.303 17 C -0.073 4.073 18 C -0.155 4.155 19 O -0.350 6.350 20 Si 0.681 3.319 21 C -0.374 4.374 22 C -0.133 4.133 23 S 0.372 5.628 24 C -0.151 4.151 25 C -0.150 4.150 26 C -0.229 4.229 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.157 0.843 38 H 0.232 0.768 39 H -0.217 1.217 40 H -0.223 1.223 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.165 -2.264 3.659 5.989 hybrid contribution 1.608 0.115 -0.645 1.736 sum -2.557 -2.149 3.014 4.499 Atomic orbital electron populations 1.20335 0.83937 1.04917 1.04354 1.24290 1.00626 0.88841 1.01743 1.73888 0.89914 1.25716 1.21176 1.84784 1.21516 1.24015 1.67739 1.24611 0.98953 0.83236 1.03461 1.20886 0.88851 0.98367 0.85279 1.87976 1.41544 1.76572 1.25365 1.22310 0.84475 0.90772 0.99248 0.89788 1.21963 0.97215 0.94168 1.03866 1.21959 0.96545 1.00515 0.97722 1.21299 0.83385 0.92027 0.98739 0.90386 1.44157 1.11592 1.11505 1.65287 1.23524 0.93054 0.92308 0.97384 1.66049 1.30763 1.07038 1.26442 1.20056 0.95090 0.92389 0.99741 1.24843 0.90569 0.96751 1.03383 1.86536 1.62300 1.42042 1.44107 0.93898 0.80983 0.78975 0.78021 1.25474 0.95178 1.03147 1.13621 1.20309 1.01763 0.90833 1.00422 1.83830 1.09844 1.09541 1.59557 1.21658 0.97789 0.91394 1.04297 1.21488 0.95317 1.00841 0.97329 1.22890 0.90500 1.02223 1.07279 0.89259 0.87582 0.90805 0.86875 0.89312 0.89848 0.91221 0.91412 0.90124 0.74773 0.84281 0.76765 1.21699 1.22342 0.88720 0.90818 0.90104 0.90252 0.89375 0.91335 0.90349 0.78157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.14 10.48 71.24 0.75 0.89 16 2 C 0.00 0.01 7.33 43.58 0.32 0.33 16 3 N -0.40 -4.08 12.07 -49.55 -0.60 -4.68 16 4 O 0.08 0.69 11.20 71.58 0.80 1.49 16 5 C -0.04 -0.06 7.12 25.04 0.18 0.12 16 6 C 0.14 -0.74 6.31 71.24 0.45 -0.29 16 7 O -0.39 0.78 9.97 -148.98 -1.49 -0.70 16 8 C 0.09 -0.61 2.61 30.59 0.08 -0.53 16 9 H 0.08 -0.83 7.79 -2.38 -0.02 -0.85 16 10 C -0.13 1.06 5.54 30.59 0.17 1.23 16 11 C -0.13 0.95 5.51 30.59 0.17 1.12 16 12 C 0.15 -0.90 2.40 44.99 0.11 -0.79 16 13 H 0.08 -0.35 7.26 -2.39 -0.02 -0.36 16 14 N -0.69 1.59 5.23 -330.40 -1.73 -0.14 16 15 C 0.31 0.84 8.22 179.32 1.47 2.31 16 16 N -0.58 -3.66 9.77 -189.86 -1.85 -5.52 16 17 C 0.06 0.27 5.19 41.40 0.21 0.48 16 18 C -0.04 -0.14 2.84 71.23 0.20 0.07 16 19 O -0.54 -3.77 12.88 -148.98 -1.92 -5.69 16 20 Si 0.78 1.98 32.62 68.60 2.24 4.22 16 21 C -0.25 -0.52 6.57 24.58 0.16 -0.36 16 22 C -0.07 0.24 9.71 71.24 0.69 0.93 16 23 S 0.12 0.05 21.67 -56.49 -1.22 -1.17 16 24 C -0.11 0.91 5.39 30.58 0.16 1.07 16 25 C -0.11 0.69 5.57 30.58 0.17 0.86 16 26 C -0.21 -0.05 11.06 22.40 0.25 0.20 16 27 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.11 -1.21 7.87 -2.39 -0.02 -1.23 16 31 H 0.09 -0.69 8.09 -2.39 -0.02 -0.71 16 32 H 0.08 -0.81 7.87 -2.39 -0.02 -0.83 16 33 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.07 -0.37 8.02 -2.39 -0.02 -0.39 16 35 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.41 -1.41 8.73 -92.71 -0.81 -2.22 16 37 H 0.14 -0.16 6.33 -2.39 -0.02 -0.17 16 38 H 0.38 1.57 8.70 -74.06 -0.64 0.93 16 39 H -0.29 -2.23 7.11 99.48 0.71 -1.52 16 40 H -0.30 -2.92 7.11 99.48 0.71 -2.22 16 41 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 42 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.08 -0.27 7.17 -2.39 -0.02 -0.29 16 44 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 46 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 48 H 0.20 -1.30 8.06 -2.91 -0.02 -1.32 16 Total: 0.00 -20.51 406.88 -0.64 -21.16 By element: Atomic # 1 Polarization: -16.20 SS G_CDS: -0.42 Total: -16.62 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.55 Total: 7.65 kcal Atomic # 7 Polarization: -6.16 SS G_CDS: -4.18 Total: -10.34 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: -2.60 Total: -4.90 kcal Atomic # 14 Polarization: 1.98 SS G_CDS: 2.24 Total: 4.22 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.22 Total: -1.17 kcal Total: -20.51 -0.64 -21.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17322388_15704122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.489 kcal (2) G-P(sol) polarization free energy of solvation -20.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds