Wall clock time and date at job start Mon Mar 8 2021 10:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30170 * 126.80349 * 2 1 4 4 O 1.20919 * 111.60599 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56506 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.77676 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47477 * 270.03162 * 6 5 4 8 8 C 1.42896 * 114.00438 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.46949 * 29.99327 * 8 7 6 10 10 C 1.52994 * 109.47406 * 149.99708 * 8 7 6 11 11 C 1.53002 * 109.47056 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47600 * 300.00097 * 11 10 8 13 13 H 1.09001 * 109.46859 * 300.00372 * 12 11 10 14 14 N 1.46497 * 109.47242 * 179.97438 * 12 11 10 15 15 C 1.39141 * 119.99997 * 155.00232 * 14 12 11 16 16 N 1.32339 * 119.71728 * 0.02562 * 15 14 12 17 17 C 1.32008 * 121.64562 * 180.02562 * 16 15 14 18 18 C 1.37980 * 120.90263 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.32850 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.47131 * 119.99523 * 19 18 17 21 21 Si 1.86305 * 109.47185 * 0.02562 * 19 18 17 22 22 C 1.38906 * 119.34588 * 0.22932 * 18 17 16 23 23 C 1.38445 * 118.48332 * 359.50520 * 22 18 17 24 24 F 1.35099 * 120.46908 * 180.22119 * 23 22 18 25 25 C 1.53003 * 109.46614 * 60.00066 * 12 11 10 26 26 C 1.53003 * 109.47067 * 270.00146 * 8 7 6 27 27 C 1.35448 * 106.45106 * 0.24589 * 5 4 3 28 28 H 1.08994 * 109.47270 * 90.02498 * 1 2 3 29 29 H 1.09008 * 109.46717 * 210.02175 * 1 2 3 30 30 H 1.09001 * 109.47105 * 330.01884 * 1 2 3 31 31 H 1.08995 * 109.47284 * 150.02557 * 6 5 4 32 32 H 1.09005 * 109.46542 * 30.02971 * 6 5 4 33 33 H 1.09005 * 109.46657 * 60.00471 * 10 8 7 34 34 H 1.08997 * 109.47290 * 299.99951 * 10 8 7 35 35 H 1.09002 * 109.47018 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.46925 * 60.00457 * 11 10 8 37 37 H 0.97003 * 119.99781 * 334.99954 * 14 12 11 38 38 H 1.08003 * 119.55082 * 179.97438 * 17 16 15 39 39 H 1.08999 * 109.47358 * 239.99883 * 19 18 17 40 40 H 0.96700 * 114.00311 * 300.00591 * 20 19 18 41 41 H 1.48497 * 110.00233 * 179.97438 * 21 19 18 42 42 H 1.48492 * 109.99800 * 301.31995 * 21 19 18 43 43 H 1.08003 * 120.75952 * 179.72646 * 22 18 17 44 44 H 1.08997 * 109.47234 * 60.00055 * 25 12 11 45 45 H 1.08997 * 109.46910 * 180.02562 * 25 12 11 46 46 H 1.08997 * 109.47116 * 299.99688 * 26 8 7 47 47 H 1.09001 * 109.47186 * 59.99764 * 26 8 7 48 48 H 1.07996 * 128.01335 * 179.74041 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6068 0.0015 6 6 4.9021 -1.3697 0.0018 7 8 5.3131 -1.6112 -1.3454 8 6 6.5419 -2.3317 -1.4579 9 1 6.6552 -2.9933 -0.5990 10 6 6.5306 -3.1617 -2.7431 11 6 7.8467 -3.9327 -2.8639 12 6 9.0146 -2.9452 -2.9048 13 1 8.9009 -2.2836 -3.7636 14 7 10.2746 -3.6835 -3.0199 15 6 11.3904 -3.0719 -3.5828 16 7 11.3073 -1.8228 -4.0121 17 6 12.3416 -1.2059 -4.5527 18 6 13.5558 -1.8466 -4.6911 19 6 14.7279 -1.1302 -5.3106 20 8 15.8011 -1.0697 -4.3690 21 14 14.2197 0.5987 -5.7836 22 6 13.6856 -3.1602 -4.2585 23 6 12.5857 -3.7799 -3.6904 24 9 12.6684 -5.0551 -3.2520 25 6 9.0258 -2.1152 -1.6195 26 6 7.7102 -1.3445 -1.4986 27 6 2.3540 -1.1321 -0.0040 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 4.7650 -2.3209 0.5159 32 1 5.6659 -0.7857 0.5155 33 1 6.4175 -2.5000 -3.6019 34 1 5.6985 -3.8651 -2.7141 35 1 7.8384 -4.5244 -3.7793 36 1 7.9602 -4.5943 -2.0051 37 1 10.3311 -4.5987 -2.7035 38 1 12.2358 -0.1861 -4.8920 39 1 15.0546 -1.6693 -6.1998 40 1 15.5811 -0.6029 -3.5512 41 1 15.3671 1.3160 -6.3952 42 1 13.0830 0.5507 -6.7379 43 1 14.6241 -3.6849 -4.3598 44 1 9.1394 -2.7768 -0.7608 45 1 9.8575 -1.4113 -1.6489 46 1 7.5970 -0.6829 -2.3573 47 1 7.7182 -0.7532 -0.5829 48 1 2.0709 -2.1743 -0.0089 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17322388_17656566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:56 Heat of formation + Delta-G solvation = -16.077762 kcal Electronic energy + Delta-G solvation = -31939.907166 eV Core-core repulsion = 27300.502042 eV Total energy + Delta-G solvation = -4639.405123 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.163 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.94724 -45.98505 -41.48538 -40.37045 -38.56007 -37.68397 -35.81949 -35.55929 -33.57678 -33.19402 -31.83663 -31.70213 -29.63691 -29.38371 -27.50335 -26.32770 -24.99142 -24.13416 -23.76058 -23.11333 -22.48524 -21.35749 -20.97304 -19.29488 -18.82858 -18.50609 -18.38609 -18.30483 -17.67553 -17.54371 -17.02787 -16.78044 -16.29210 -16.12330 -16.06821 -15.92179 -15.42365 -15.37259 -14.93622 -14.89193 -14.44698 -14.35326 -14.25895 -14.23501 -14.06546 -13.98579 -13.78536 -13.53411 -13.35780 -13.15198 -13.10859 -12.65323 -12.51014 -12.30532 -12.16125 -12.12488 -12.08444 -11.61171 -11.49006 -11.15680 -11.01335 -10.72269 -10.65464 -10.57906 -10.42772 -10.41152 -8.75136 -4.97627 -0.07926 0.11505 0.30197 1.17428 1.31797 1.65411 1.93859 1.99364 2.01591 2.55211 2.81781 3.03755 3.23297 3.28655 3.45192 3.50036 3.65806 3.67697 3.74421 3.86491 3.96048 3.99538 4.05568 4.10484 4.18468 4.25448 4.27287 4.31555 4.43185 4.44287 4.46466 4.48250 4.49899 4.56930 4.64874 4.69464 4.76335 4.83616 4.86160 4.88039 4.96819 4.99771 5.09462 5.17297 5.20062 5.20486 5.25562 5.36070 5.47268 5.99339 6.16632 6.21767 6.78947 6.97934 7.21959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.003 3.997 3 N -0.399 5.399 4 O 0.084 5.916 5 C -0.039 4.039 6 C 0.143 3.857 7 O -0.396 6.396 8 C 0.091 3.909 9 H 0.087 0.913 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.157 3.843 13 H 0.077 0.923 14 N -0.710 5.710 15 C 0.384 3.616 16 N -0.525 5.525 17 C 0.146 3.854 18 C -0.207 4.207 19 C -0.057 4.057 20 O -0.556 6.556 21 Si 0.772 3.228 22 C -0.041 4.041 23 C -0.037 4.037 24 F -0.140 7.140 25 C -0.117 4.117 26 C -0.135 4.135 27 C -0.208 4.208 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.416 0.584 38 H 0.181 0.819 39 H 0.111 0.889 40 H 0.396 0.604 41 H -0.297 1.297 42 H -0.281 1.281 43 H 0.153 0.847 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -3.473 3.409 5.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.155 4.155 3 N -0.107 5.107 4 O 0.019 5.981 5 C -0.102 4.102 6 C 0.066 3.934 7 O -0.316 6.316 8 C 0.034 3.966 9 H 0.105 0.895 10 C -0.146 4.146 11 C -0.155 4.155 12 C 0.053 3.947 13 H 0.095 0.905 14 N -0.342 5.342 15 C 0.145 3.855 16 N -0.242 5.242 17 C -0.011 4.011 18 C -0.212 4.212 19 C -0.168 4.168 20 O -0.364 6.364 21 Si 0.677 3.323 22 C -0.067 4.067 23 C -0.063 4.063 24 F -0.119 7.119 25 C -0.156 4.156 26 C -0.174 4.174 27 C -0.229 4.229 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.197 0.803 39 H 0.128 0.872 40 H 0.246 0.754 41 H -0.225 1.225 42 H -0.207 1.207 43 H 0.171 0.829 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.252 -1.376 2.266 3.478 hybrid contribution 1.083 -2.256 -0.100 2.504 sum -1.169 -3.632 2.165 4.387 Atomic orbital electron populations 1.20335 0.83894 1.04926 1.04353 1.24296 1.00641 0.88833 1.01749 1.73882 0.89898 1.25718 1.21154 1.84785 1.21531 1.24009 1.67743 1.24608 0.98939 0.83251 1.03438 1.20893 0.88677 0.98535 0.85311 1.87974 1.40985 1.77182 1.25411 1.22293 0.82314 0.92498 0.99446 0.89492 1.21469 0.97605 0.98642 0.96935 1.21717 0.92275 0.97559 1.03937 1.21006 0.81713 0.93455 0.98567 0.90470 1.44708 1.08142 1.16471 1.64875 1.18567 0.86348 0.89311 0.91241 1.67362 1.32448 1.07561 1.16825 1.22673 0.86879 0.99584 0.91959 1.20965 0.97722 0.95304 1.07212 1.24955 0.87214 1.10005 0.94621 1.86475 1.36854 1.80973 1.32056 0.93808 0.77022 0.75542 0.85898 1.21414 0.97677 0.94523 0.93123 1.18124 0.95811 0.81825 1.10566 1.91466 1.96761 1.35601 1.88109 1.21785 0.97100 0.98972 0.97710 1.21947 0.93862 0.98535 1.03010 1.22893 0.90464 1.02244 1.07317 0.89266 0.87576 0.90776 0.86658 0.89603 0.91905 0.89916 0.90482 0.89531 0.74577 0.80302 0.87150 0.75420 1.22464 1.20739 0.82930 0.90861 0.92114 0.92014 0.90837 0.78121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.11 10.47 71.24 0.75 0.85 16 2 C 0.00 0.01 7.33 43.58 0.32 0.33 16 3 N -0.40 -4.35 12.07 -49.56 -0.60 -4.94 16 4 O 0.08 0.76 11.20 71.65 0.80 1.57 16 5 C -0.04 -0.10 7.12 25.04 0.18 0.08 16 6 C 0.14 -0.55 6.31 71.24 0.45 -0.10 16 7 O -0.40 0.10 9.97 -148.98 -1.49 -1.39 16 8 C 0.09 -0.44 2.61 30.59 0.08 -0.36 16 9 H 0.09 -0.77 7.79 -2.38 -0.02 -0.79 16 10 C -0.11 0.52 5.57 30.59 0.17 0.69 16 11 C -0.12 0.75 5.39 30.60 0.16 0.91 16 12 C 0.16 -0.47 2.47 44.99 0.11 -0.36 16 13 H 0.08 0.07 7.54 -2.39 -0.02 0.06 16 14 N -0.71 1.00 5.22 -324.29 -1.69 -0.69 16 15 C 0.38 0.92 7.47 133.08 0.99 1.92 16 16 N -0.52 -1.36 9.20 -193.04 -1.78 -3.13 16 17 C 0.15 -0.11 9.84 84.61 0.83 0.73 16 18 C -0.21 0.21 5.39 -19.77 -0.11 0.10 16 19 C -0.06 0.14 2.84 71.23 0.20 0.34 16 20 O -0.56 0.91 12.78 -148.98 -1.90 -0.99 16 21 Si 0.77 -3.07 29.82 68.60 2.05 -1.02 16 22 C -0.04 -0.05 9.76 22.48 0.22 0.17 16 23 C -0.04 -0.11 7.35 22.58 0.17 0.06 16 24 F -0.14 -0.58 16.65 44.97 0.75 0.16 16 25 C -0.12 0.43 5.51 30.58 0.17 0.59 16 26 C -0.14 0.47 5.53 30.58 0.17 0.64 16 27 C -0.21 -0.20 11.06 22.40 0.25 0.04 16 28 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.11 -0.66 8.14 -2.38 -0.02 -0.68 16 30 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.12 -1.13 8.09 -2.39 -0.02 -1.15 16 32 H 0.09 -0.52 7.87 -2.38 -0.02 -0.54 16 33 H 0.06 -0.10 8.14 -2.38 -0.02 -0.12 16 34 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.42 -1.59 8.07 -92.71 -0.75 -2.34 16 38 H 0.18 -0.96 4.88 -2.91 -0.01 -0.98 16 39 H 0.11 -0.18 7.96 -2.39 -0.02 -0.19 16 40 H 0.40 -3.76 8.70 -74.06 -0.64 -4.41 16 41 H -0.30 -1.12 7.11 99.48 0.71 -0.41 16 42 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 43 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 44 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.06 -0.02 8.14 -2.39 -0.02 -0.03 16 46 H 0.06 -0.01 8.14 -2.39 -0.02 -0.02 16 47 H 0.07 -0.31 7.87 -2.39 -0.02 -0.33 16 48 H 0.20 -1.18 8.06 -2.91 -0.02 -1.20 16 Total: 0.00 -19.84 399.44 0.90 -18.94 By element: Atomic # 1 Polarization: -14.79 SS G_CDS: -0.35 Total: -15.14 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.11 Total: 6.65 kcal Atomic # 7 Polarization: -4.70 SS G_CDS: -4.07 Total: -8.77 kcal Atomic # 8 Polarization: 1.77 SS G_CDS: -2.59 Total: -0.82 kcal Atomic # 9 Polarization: -0.58 SS G_CDS: 0.75 Total: 0.16 kcal Atomic # 14 Polarization: -3.07 SS G_CDS: 2.05 Total: -1.02 kcal Total: -19.84 0.90 -18.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17322388_17656566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.859 kcal (2) G-P(sol) polarization free energy of solvation -19.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds