Wall clock time and date at job start Mon Mar 8 2021 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 H 1.00891 * 109.47532 * 2 1 4 4 C 1.46905 * 109.47203 * 120.00123 * 2 1 3 5 5 C 1.46900 * 109.46791 * 239.99943 * 2 1 3 6 6 C 1.52999 * 109.47282 * 66.00180 * 5 2 1 7 7 H 1.09004 * 109.47061 * 305.46435 * 6 5 2 8 8 C 1.52998 * 109.47162 * 65.46035 * 6 5 2 9 9 C 1.52999 * 109.47162 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47305 * 300.00380 * 9 8 6 11 11 H 1.09004 * 109.47078 * 300.00010 * 10 9 8 12 12 N 1.46500 * 109.47393 * 179.97438 * 10 9 8 13 13 C 1.38405 * 120.00103 * 155.00071 * 12 10 9 14 14 N 1.32489 * 119.21672 * 359.72797 * 13 12 10 15 15 C 1.32282 * 120.73656 * 179.71884 * 14 13 12 16 16 C 1.38607 * 119.20000 * 0.54956 * 15 14 13 17 17 C 1.50694 * 120.72256 * 179.70911 * 16 15 14 18 18 O 1.42898 * 109.47149 * 120.01935 * 17 16 15 19 19 Si 1.86304 * 109.47034 * 0.02562 * 17 16 15 20 20 C 1.38602 * 118.55551 * 359.72980 * 16 15 14 21 21 N 1.32280 * 119.19990 * 359.97438 * 20 16 15 22 22 C 1.53005 * 109.47271 * 59.99953 * 10 9 8 23 23 C 1.52998 * 109.47305 * 185.46414 * 6 5 2 24 24 H 1.09001 * 109.46765 * 293.73263 * 1 2 3 25 25 H 1.08995 * 109.47549 * 53.73053 * 1 2 3 26 26 H 1.09000 * 109.47593 * 173.73584 * 1 2 3 27 27 H 1.08997 * 109.47160 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47235 * 300.00092 * 4 2 1 29 29 H 1.08998 * 109.46850 * 59.99791 * 4 2 1 30 30 H 1.08998 * 109.47316 * 305.99998 * 5 2 1 31 31 H 1.09004 * 109.47180 * 186.00170 * 5 2 1 32 32 H 1.09004 * 109.46806 * 60.00244 * 8 6 5 33 33 H 1.09000 * 109.47494 * 300.00450 * 8 6 5 34 34 H 1.08999 * 109.47323 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47061 * 60.00401 * 9 8 6 36 36 H 0.97006 * 119.99699 * 335.00169 * 12 10 9 37 37 H 1.08002 * 120.39830 * 180.30307 * 15 14 13 38 38 H 1.09000 * 109.47275 * 240.02144 * 17 16 15 39 39 H 0.96697 * 114.00027 * 299.99732 * 18 17 16 40 40 H 1.48495 * 110.00174 * 58.68091 * 19 17 16 41 41 H 1.48496 * 109.99834 * 180.02562 * 19 17 16 42 42 H 1.08000 * 120.40526 * 180.02562 * 20 16 15 43 43 H 1.08995 * 109.46731 * 59.99924 * 22 10 9 44 44 H 1.08998 * 109.47026 * 180.02562 * 22 10 9 45 45 H 1.08995 * 109.47306 * 300.00229 * 23 6 5 46 46 H 1.09007 * 109.46924 * 60.00049 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 1 1.8053 0.9512 0.0000 4 6 1.9587 -0.6925 1.1995 5 6 1.9585 -0.6925 -1.1995 6 6 1.5754 0.1105 -2.4441 7 1 0.4999 0.2878 -2.4453 8 6 2.3131 1.4509 -2.4334 9 6 1.9304 2.2536 -3.6784 10 6 2.3196 1.4673 -4.9318 11 1 3.3951 1.2900 -4.9301 12 7 1.9527 2.2357 -6.1239 13 6 2.6242 2.0264 -7.3159 14 7 3.6000 1.1313 -7.3600 15 6 4.2580 0.9033 -8.4846 16 6 3.9232 1.6219 -9.6216 17 6 4.6546 1.3945 -10.9193 18 8 3.7282 0.9670 -11.9197 19 14 5.9558 0.0833 -10.6772 20 6 2.9012 2.5545 -9.5388 21 7 2.2793 2.7297 -8.3846 22 6 1.5818 0.1269 -4.9426 23 6 1.9641 -0.6756 -3.6979 24 1 -0.3633 0.4136 0.9408 25 1 -0.3634 0.6079 -0.8285 26 1 -0.3634 -1.0215 -0.1121 27 1 3.0486 -0.6929 1.1992 28 1 1.5953 -0.1788 2.0894 29 1 1.5953 -1.7202 1.1994 30 1 1.5101 -1.6845 -1.2548 31 1 3.0433 -0.7866 -1.1474 32 1 3.3886 1.2736 -2.4322 33 1 2.0362 2.0109 -1.5402 34 1 2.4563 3.2083 -3.6710 35 1 0.8549 2.4309 -3.6800 36 1 1.2390 2.8911 -6.0778 37 1 5.0492 0.1688 -8.5156 38 1 5.1291 2.3231 -11.2366 39 1 3.2678 0.1445 -11.7038 40 1 5.3251 -1.1788 -10.2140 41 1 6.6848 -0.1499 -11.9497 42 1 2.6155 3.1308 -10.4064 43 1 0.5064 0.3042 -4.9442 44 1 1.8595 -0.4335 -5.8353 45 1 3.0395 -0.8528 -3.6967 46 1 1.4384 -1.6305 -3.7055 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17508096_12175864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:25:01 Heat of formation + Delta-G solvation = 125.452629 kcal Electronic energy + Delta-G solvation = -24206.277864 eV Core-core repulsion = 20829.887471 eV Total energy + Delta-G solvation = -3376.390393 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26310 -42.04278 -39.63246 -38.18007 -36.26137 -34.79045 -33.15324 -31.85109 -31.23764 -29.37588 -27.84107 -26.47146 -25.90114 -25.25558 -23.66699 -23.33830 -22.25435 -21.00319 -19.44178 -19.20866 -18.77874 -18.20640 -17.57292 -17.28149 -16.63999 -16.59995 -16.19203 -15.86774 -15.77910 -15.37805 -15.26127 -14.96299 -14.63320 -14.10643 -14.08027 -13.90930 -13.59009 -13.47726 -13.33666 -13.23383 -13.19707 -13.12735 -12.90910 -12.38038 -12.28294 -12.13202 -11.95485 -11.88533 -11.75231 -11.61751 -11.33956 -11.03716 -10.74859 -10.12019 -9.14812 -4.97286 0.00263 0.05994 1.04201 1.26817 1.54469 1.79180 1.97031 2.73519 2.89317 3.00429 3.10582 3.25561 3.37075 3.51229 3.57492 3.61999 3.67599 3.72186 3.76758 3.93583 4.08036 4.14368 4.17871 4.21880 4.27707 4.33192 4.36317 4.38466 4.47266 4.53152 4.58644 4.61300 4.67011 4.73344 4.78868 4.83348 4.88917 4.92184 4.97784 5.03645 5.16507 5.21017 5.21907 5.30183 5.44215 5.75675 6.00986 6.33861 6.44262 7.21643 Molecular weight = 294.19amu Principal moments of inertia in cm(-1) A = 0.031259 B = 0.003086 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.530188 B = 9070.425870 C = 9563.564318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.373 5.373 3 H 0.433 0.567 4 C -0.047 4.047 5 C 0.003 3.997 6 C -0.107 4.107 7 H 0.107 0.893 8 C -0.120 4.120 9 C -0.127 4.127 10 C 0.156 3.844 11 H 0.080 0.920 12 N -0.693 5.693 13 C 0.550 3.450 14 N -0.568 5.568 15 C 0.195 3.805 16 C -0.284 4.284 17 C -0.061 4.061 18 O -0.548 6.548 19 Si 0.764 3.236 20 C 0.211 3.789 21 N -0.595 5.595 22 C -0.129 4.129 23 C -0.105 4.105 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.189 0.811 38 H 0.128 0.872 39 H 0.385 0.615 40 H -0.274 1.274 41 H -0.308 1.308 42 H 0.175 0.825 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 -5.362 32.315 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 N 0.050 4.950 3 H 0.271 0.729 4 C -0.189 4.189 5 C -0.119 4.119 6 C -0.126 4.126 7 H 0.125 0.875 8 C -0.158 4.158 9 C -0.165 4.165 10 C 0.052 3.948 11 H 0.098 0.902 12 N -0.329 5.329 13 C 0.193 3.807 14 N -0.291 5.291 15 C 0.028 3.972 16 C -0.292 4.292 17 C -0.171 4.171 18 O -0.356 6.356 19 Si 0.669 3.331 20 C 0.043 3.957 21 N -0.317 5.317 22 C -0.168 4.168 23 C -0.143 4.143 24 H 0.146 0.854 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.253 0.747 37 H 0.205 0.795 38 H 0.145 0.855 39 H 0.234 0.766 40 H -0.201 1.201 41 H -0.236 1.236 42 H 0.192 0.808 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.207 -5.795 32.889 33.799 hybrid contribution -0.865 0.174 -2.205 2.375 sum -6.072 -5.621 30.684 31.780 Atomic orbital electron populations 1.24208 0.76304 1.09658 1.09611 1.44893 1.15937 1.19461 1.14732 0.72868 1.24147 1.05802 1.02433 0.86512 1.23934 1.06194 0.99426 0.82369 1.21651 1.02989 0.94767 0.93178 0.87450 1.21764 1.02037 0.94607 0.97407 1.21782 1.02747 0.98854 0.93083 1.21206 1.00100 0.90725 0.82759 0.90230 1.44464 1.38505 1.44191 1.05712 1.19747 0.87095 0.86463 0.87356 1.67963 1.10729 1.21009 1.29353 1.23181 0.94113 0.93650 0.86271 1.21668 1.04368 1.04184 0.99021 1.24907 0.97241 1.09381 0.85579 1.86608 1.57845 1.45941 1.45233 0.94419 0.79173 0.76291 0.83217 1.23063 0.87670 0.91076 0.93875 1.68007 1.33210 1.29996 1.00496 1.21890 1.00228 0.95739 0.98934 1.21386 1.02727 0.98313 0.91902 0.85393 0.86028 0.86044 0.85610 0.85545 0.86220 0.84252 0.83952 0.89861 0.87994 0.91652 0.90235 0.74713 0.79482 0.85478 0.76562 1.20071 1.23591 0.80796 0.91863 0.94431 0.90711 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.51 8.87 127.69 1.13 4.64 16 2 N -0.37 24.53 0.66 -948.86 -0.62 23.90 16 3 H 0.43 -29.75 6.61 -89.70 -0.59 -30.34 16 4 C -0.05 3.01 9.17 127.69 1.17 4.19 16 5 C 0.00 -0.17 4.12 86.30 0.36 0.18 16 6 C -0.11 5.61 2.09 -10.80 -0.02 5.58 16 7 H 0.11 -5.79 6.33 -2.39 -0.02 -5.80 16 8 C -0.12 5.91 4.97 30.59 0.15 6.06 16 9 C -0.13 4.82 5.39 30.59 0.16 4.98 16 10 C 0.16 -4.63 2.45 44.99 0.11 -4.52 16 11 H 0.08 -2.09 7.50 -2.39 -0.02 -2.11 16 12 N -0.69 14.86 5.22 -330.43 -1.73 13.13 16 13 C 0.55 -7.75 8.40 261.49 2.20 -5.56 16 14 N -0.57 8.60 9.20 -197.98 -1.82 6.78 16 15 C 0.20 -3.28 9.92 84.71 0.84 -2.44 16 16 C -0.28 4.40 5.40 -19.69 -0.11 4.30 16 17 C -0.06 0.98 2.85 71.23 0.20 1.19 16 18 O -0.55 6.65 12.79 -148.98 -1.90 4.74 16 19 Si 0.76 -13.30 29.87 68.60 2.05 -11.25 16 20 C 0.21 -2.64 10.92 84.71 0.93 -1.72 16 21 N -0.59 6.35 10.46 -197.99 -2.07 4.28 16 22 C -0.13 4.02 5.50 30.58 0.17 4.19 16 23 C -0.10 4.35 5.20 30.58 0.16 4.51 16 24 H 0.13 -8.07 8.06 -2.39 -0.02 -8.09 16 25 H 0.12 -7.56 6.52 -2.39 -0.02 -7.57 16 26 H 0.12 -7.53 7.98 -2.39 -0.02 -7.55 16 27 H 0.13 -8.00 8.10 -2.39 -0.02 -8.02 16 28 H 0.13 -8.03 8.10 -2.39 -0.02 -8.05 16 29 H 0.12 -7.50 8.14 -2.39 -0.02 -7.51 16 30 H 0.14 -8.55 7.98 -2.39 -0.02 -8.57 16 31 H 0.14 -8.81 8.07 -2.38 -0.02 -8.83 16 32 H 0.08 -3.96 8.14 -2.39 -0.02 -3.98 16 33 H 0.10 -5.74 6.62 -2.39 -0.02 -5.76 16 34 H 0.06 -2.22 8.14 -2.39 -0.02 -2.24 16 35 H 0.08 -3.08 8.14 -2.39 -0.02 -3.10 16 36 H 0.42 -9.43 8.72 -92.70 -0.81 -10.24 16 37 H 0.19 -4.16 5.04 -2.91 -0.01 -4.17 16 38 H 0.13 -2.22 7.96 -2.39 -0.02 -2.24 16 39 H 0.39 -6.75 8.70 -74.06 -0.64 -7.39 16 40 H -0.27 4.05 7.11 99.48 0.71 4.76 16 41 H -0.31 2.35 7.11 99.48 0.71 3.06 16 42 H 0.18 -2.53 8.06 -2.91 -0.02 -2.55 16 43 H 0.06 -1.93 8.14 -2.39 -0.02 -1.95 16 44 H 0.04 -0.84 8.14 -2.39 -0.02 -0.86 16 45 H 0.07 -3.00 8.14 -2.39 -0.02 -3.02 16 46 H 0.08 -3.26 8.14 -2.38 -0.02 -3.28 16 Total: 1.00 -78.56 353.17 0.33 -78.23 By element: Atomic # 1 Polarization: -144.38 SS G_CDS: -1.02 Total: -145.40 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.45 Total: 25.59 kcal Atomic # 7 Polarization: 54.34 SS G_CDS: -6.24 Total: 48.10 kcal Atomic # 8 Polarization: 6.65 SS G_CDS: -1.90 Total: 4.74 kcal Atomic # 14 Polarization: -13.30 SS G_CDS: 2.05 Total: -11.25 kcal Total: -78.56 0.33 -78.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17508096_12175864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.682 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds