Wall clock time and date at job start Mon Mar 8 2021 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 H 1.00904 * 109.47044 * 2 1 4 4 C 1.46906 * 109.47109 * 119.99587 * 2 1 3 5 5 C 1.46901 * 109.47225 * 239.99831 * 2 1 3 6 6 C 1.53002 * 109.46939 * 174.07002 * 5 2 1 7 7 H 1.08997 * 109.47495 * 56.40486 * 6 5 2 8 8 C 1.52997 * 109.46996 * 176.40426 * 6 5 2 9 9 C 1.53000 * 109.47480 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46955 * 300.00238 * 9 8 6 11 11 H 1.08997 * 109.47036 * 299.99806 * 10 9 8 12 12 N 1.46495 * 109.47358 * 179.97438 * 10 9 8 13 13 C 1.39006 * 120.00056 * 84.99901 * 12 10 9 14 14 N 1.32393 * 119.70712 * 180.02562 * 13 12 10 15 15 C 1.31974 * 121.62311 * 179.97438 * 14 13 12 16 16 C 1.38025 * 120.85607 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.33526 * 180.02562 * 16 15 14 18 18 O 1.42906 * 109.47062 * 244.97650 * 17 16 15 19 19 Si 1.86305 * 109.47052 * 4.97199 * 17 16 15 20 20 C 1.38879 * 119.33011 * 359.97438 * 16 15 14 21 21 C 1.38305 * 118.50438 * 0.02562 * 20 16 15 22 22 C 1.53000 * 109.47559 * 59.99482 * 10 9 8 23 23 C 1.53001 * 109.46745 * 296.40194 * 6 5 2 24 24 H 1.09007 * 109.47185 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47590 * 300.00091 * 1 2 3 26 26 H 1.08998 * 109.47248 * 60.00381 * 1 2 3 27 27 H 1.09001 * 109.46810 * 66.18656 * 4 2 1 28 28 H 1.08994 * 109.47113 * 186.18300 * 4 2 1 29 29 H 1.09001 * 109.47422 * 306.18746 * 4 2 1 30 30 H 1.08996 * 109.47402 * 54.06552 * 5 2 1 31 31 H 1.09001 * 109.46802 * 294.06636 * 5 2 1 32 32 H 1.08996 * 109.47107 * 299.99598 * 8 6 5 33 33 H 1.09001 * 109.47396 * 59.99920 * 8 6 5 34 34 H 1.08991 * 109.47900 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47185 * 59.99100 * 9 8 6 36 36 H 0.96998 * 120.00058 * 264.99943 * 12 10 9 37 37 H 1.08000 * 119.57134 * 179.97438 * 15 14 13 38 38 H 1.09001 * 109.47197 * 124.97505 * 17 16 15 39 39 H 0.96695 * 114.00445 * 59.99507 * 18 17 16 40 40 H 1.48506 * 109.99754 * 180.02562 * 19 17 16 41 41 H 1.48503 * 110.00091 * 301.31928 * 19 17 16 42 42 H 1.07997 * 120.74639 * 180.28018 * 20 16 15 43 43 H 1.08005 * 120.44823 * 179.97438 * 21 20 16 44 44 H 1.09001 * 109.47128 * 59.99913 * 22 10 9 45 45 H 1.08996 * 109.47445 * 180.02562 * 22 10 9 46 46 H 1.08996 * 109.47601 * 60.00308 * 23 6 5 47 47 H 1.09001 * 109.47297 * 299.99865 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6924 1.1995 5 6 1.9586 -0.6925 -1.1994 6 6 3.4814 -0.5647 -1.2761 7 1 3.9254 -0.9558 -0.3607 8 6 4.0002 -1.3608 -2.4752 9 6 5.5229 -1.2326 -2.5523 10 6 5.9030 0.2405 -2.7152 11 1 5.4586 0.6314 -3.6305 12 7 7.3609 0.3635 -2.7884 13 6 8.0120 0.1989 -4.0055 14 7 9.3299 0.3108 -4.0650 15 6 9.9865 0.1613 -5.2000 16 6 9.3166 -0.1185 -6.3738 17 6 10.0782 -0.2874 -7.6632 18 8 9.7193 0.7582 -8.5688 19 14 11.9075 -0.2097 -7.3186 20 6 7.9336 -0.2439 -6.3545 21 6 7.2729 -0.0820 -5.1503 22 6 5.3841 1.0367 -1.5161 23 6 3.8619 0.9083 -1.4387 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 -1.7471 1.1459 28 1 3.0429 -0.5976 1.2566 29 1 1.5077 -0.2465 2.0861 30 1 1.5112 -0.2438 -2.0862 31 1 1.6846 -1.7463 -1.1478 32 1 3.7291 -2.4102 -2.3594 33 1 3.5562 -0.9698 -3.3906 34 1 5.8926 -1.8001 -3.4062 35 1 5.9673 -1.6233 -1.6369 36 1 7.8719 0.5598 -1.9877 37 1 11.0619 0.2601 -5.2105 38 1 9.8326 -1.2523 -8.1065 39 1 9.9101 1.6470 -8.2391 40 1 12.6698 -0.3743 -8.5824 41 1 12.2503 1.0888 -6.6847 42 1 7.3868 -0.4670 -7.2587 43 1 6.1978 -0.1724 -5.0994 44 1 5.8285 0.6459 -0.6007 45 1 5.6545 2.0862 -1.6323 46 1 3.4923 1.4755 -0.5845 47 1 3.4179 1.2994 -2.3541 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17508096_13915762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:25:04 Heat of formation + Delta-G solvation = 108.639057 kcal Electronic energy + Delta-G solvation = -24035.316119 eV Core-core repulsion = 20723.622546 eV Total energy + Delta-G solvation = -3311.693573 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.197 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18699 -41.47805 -39.58697 -38.05180 -36.12714 -33.59818 -32.55335 -31.81983 -30.79280 -29.38071 -27.74485 -26.25516 -25.25113 -24.96287 -23.56959 -23.00154 -21.97094 -20.93177 -19.27001 -18.72281 -18.60454 -17.78588 -17.55766 -17.22614 -16.55142 -16.38893 -16.16196 -15.87070 -15.52355 -15.24257 -14.98769 -14.86451 -14.41926 -14.06418 -14.03394 -13.90621 -13.59666 -13.52447 -13.36935 -13.28577 -13.19863 -13.13449 -12.92373 -12.54586 -12.25455 -12.14118 -12.05244 -11.80518 -11.56243 -11.35893 -10.98490 -10.77514 -10.60388 -10.44200 -8.73585 -4.97676 0.17434 0.36298 1.03748 1.28392 1.53219 1.92612 2.08269 2.78050 2.89709 3.00252 3.24593 3.40723 3.50429 3.55679 3.59720 3.71214 3.73466 3.92340 3.96496 4.04856 4.05886 4.11050 4.21031 4.23793 4.30594 4.31794 4.35603 4.37608 4.47574 4.53373 4.55252 4.61394 4.65744 4.72269 4.76759 4.82778 4.88036 4.90230 4.93350 5.02693 5.05062 5.16957 5.21143 5.26176 5.29450 5.41185 5.52112 6.04952 6.44460 6.49034 7.12061 Molecular weight = 293.20amu Principal moments of inertia in cm(-1) A = 0.042463 B = 0.002848 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.232067 B = 9828.127437 C =10078.406601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.374 5.374 3 H 0.433 0.567 4 C -0.055 4.055 5 C 0.002 3.998 6 C -0.108 4.108 7 H 0.106 0.894 8 C -0.107 4.107 9 C -0.136 4.136 10 C 0.148 3.852 11 H 0.081 0.919 12 N -0.720 5.720 13 C 0.396 3.604 14 N -0.570 5.570 15 C 0.142 3.858 16 C -0.233 4.233 17 C -0.059 4.059 18 O -0.549 6.549 19 Si 0.748 3.252 20 C -0.014 4.014 21 C -0.236 4.236 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.120 0.880 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.404 0.596 37 H 0.159 0.841 38 H 0.127 0.873 39 H 0.384 0.616 40 H -0.306 1.306 41 H -0.285 1.285 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.394 -1.767 20.377 34.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.049 4.951 3 H 0.271 0.729 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.127 4.127 7 H 0.124 0.876 8 C -0.146 4.146 9 C -0.175 4.175 10 C 0.044 3.956 11 H 0.099 0.901 12 N -0.352 5.352 13 C 0.159 3.841 14 N -0.287 5.287 15 C -0.014 4.014 16 C -0.238 4.238 17 C -0.169 4.169 18 O -0.357 6.357 19 Si 0.655 3.345 20 C -0.040 4.040 21 C -0.260 4.260 22 C -0.164 4.164 23 C -0.160 4.160 24 H 0.138 0.862 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.240 0.760 37 H 0.176 0.824 38 H 0.144 0.856 39 H 0.234 0.766 40 H -0.234 1.234 41 H -0.212 1.212 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.116 0.884 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.703 -1.938 20.642 34.602 hybrid contribution 0.291 1.268 -1.091 1.698 sum -27.412 -0.670 19.551 33.677 Atomic orbital electron populations 1.24144 0.75437 1.09598 1.09730 1.44915 1.16099 1.19302 1.14811 0.72932 1.24207 1.05786 1.02648 0.87119 1.23955 0.96029 1.03511 0.88500 1.21653 0.93160 0.96444 1.01399 0.87604 1.21432 0.93206 1.01349 0.98602 1.22013 0.97674 0.95581 1.02252 1.21290 0.77626 0.96154 1.00528 0.90108 1.44791 1.07269 1.76758 1.06342 1.18705 0.88061 0.89606 0.87728 1.67166 1.08830 1.22754 1.29979 1.22425 0.99729 0.92338 0.86928 1.20911 0.95983 1.10491 0.96466 1.24797 1.09112 0.93983 0.89027 1.86576 1.85388 1.18460 1.45237 0.94329 0.73187 0.85888 0.81052 1.21437 0.93195 0.91140 0.98209 1.21643 1.01802 1.10786 0.91812 1.21739 0.97673 0.99925 0.97085 1.21767 0.94001 0.95595 1.04615 0.86157 0.85632 0.85632 0.85961 0.86051 0.85491 0.83938 0.84184 0.90109 0.90335 0.93308 0.91677 0.76042 0.82408 0.85574 0.76650 1.23407 1.21165 0.83662 0.82701 0.90507 0.91869 0.88372 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.05 9.17 127.69 1.17 4.22 16 2 N -0.37 24.83 0.66 -948.84 -0.62 24.20 16 3 H 0.43 -29.88 6.52 -89.69 -0.59 -30.47 16 4 C -0.06 3.53 8.86 127.69 1.13 4.66 16 5 C 0.00 -0.13 4.14 86.30 0.36 0.23 16 6 C -0.11 5.82 2.07 -10.79 -0.02 5.80 16 7 H 0.11 -5.82 6.40 -2.39 -0.02 -5.84 16 8 C -0.11 4.79 5.20 30.59 0.16 4.95 16 9 C -0.14 4.75 5.42 30.60 0.17 4.92 16 10 C 0.15 -4.90 2.14 44.99 0.10 -4.80 16 11 H 0.08 -2.61 6.45 -2.39 -0.02 -2.63 16 12 N -0.72 17.01 5.24 -324.55 -1.70 15.30 16 13 C 0.40 -6.43 7.63 133.06 1.02 -5.41 16 14 N -0.57 6.15 10.39 -193.26 -2.01 4.14 16 15 C 0.14 -1.70 9.84 84.62 0.83 -0.87 16 16 C -0.23 3.20 5.36 -19.76 -0.11 3.10 16 17 C -0.06 0.79 2.82 71.24 0.20 0.99 16 18 O -0.55 5.61 12.84 -148.98 -1.91 3.69 16 19 Si 0.75 -9.51 29.91 68.60 2.05 -7.46 16 20 C -0.01 0.23 9.84 22.44 0.22 0.45 16 21 C -0.24 4.42 8.84 22.50 0.20 4.62 16 22 C -0.13 4.99 5.39 30.58 0.16 5.16 16 23 C -0.12 6.18 4.93 30.58 0.15 6.33 16 24 H 0.12 -7.60 8.14 -2.38 -0.02 -7.62 16 25 H 0.13 -8.01 8.10 -2.39 -0.02 -8.03 16 26 H 0.13 -8.06 8.10 -2.39 -0.02 -8.07 16 27 H 0.12 -7.66 7.99 -2.39 -0.02 -7.68 16 28 H 0.12 -7.60 6.55 -2.39 -0.02 -7.62 16 29 H 0.13 -8.04 8.07 -2.39 -0.02 -8.06 16 30 H 0.14 -9.01 8.07 -2.39 -0.02 -9.03 16 31 H 0.14 -8.77 7.99 -2.39 -0.02 -8.79 16 32 H 0.08 -3.56 8.14 -2.39 -0.02 -3.58 16 33 H 0.08 -3.48 8.14 -2.39 -0.02 -3.49 16 34 H 0.05 -1.38 7.66 -2.39 -0.02 -1.39 16 35 H 0.06 -2.15 8.14 -2.39 -0.02 -2.17 16 36 H 0.40 -9.40 8.73 -92.71 -0.81 -10.21 16 37 H 0.16 -2.21 4.85 -2.91 -0.01 -2.23 16 38 H 0.13 -1.95 7.96 -2.39 -0.02 -1.97 16 39 H 0.38 -5.84 8.70 -74.06 -0.64 -6.48 16 40 H -0.31 1.21 7.11 99.48 0.71 1.92 16 41 H -0.28 2.43 7.01 99.48 0.70 3.13 16 42 H 0.15 -2.67 8.06 -2.91 -0.02 -2.70 16 43 H 0.16 -3.86 6.08 -2.91 -0.02 -3.87 16 44 H 0.08 -3.03 8.14 -2.39 -0.02 -3.04 16 45 H 0.06 -2.21 8.14 -2.39 -0.02 -2.23 16 46 H 0.10 -5.60 6.57 -2.39 -0.02 -5.62 16 47 H 0.08 -4.25 8.14 -2.39 -0.02 -4.27 16 Total: 1.00 -78.36 354.65 0.50 -77.86 By element: Atomic # 1 Polarization: -151.03 SS G_CDS: -1.04 Total: -152.07 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 5.74 Total: 34.34 kcal Atomic # 7 Polarization: 47.98 SS G_CDS: -4.33 Total: 43.64 kcal Atomic # 8 Polarization: 5.61 SS G_CDS: -1.91 Total: 3.69 kcal Atomic # 14 Polarization: -9.51 SS G_CDS: 2.05 Total: -7.46 kcal Total: -78.36 0.50 -77.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17508096_13915762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.497 kcal (2) G-P(sol) polarization free energy of solvation -78.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds