Wall clock time and date at job start Mon Mar 8 2021 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00901 * 109.47122 * 2 1 4 4 C 1.46900 * 109.46814 * 119.99581 * 2 1 3 5 5 C 1.46896 * 109.47403 * 239.99605 * 2 1 3 6 6 C 1.53006 * 109.47191 * 65.00136 * 5 2 1 7 7 H 1.09000 * 109.46866 * 305.00159 * 6 5 2 8 8 C 1.52997 * 109.46974 * 64.99934 * 6 5 2 9 9 C 1.52996 * 109.47165 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46972 * 300.00293 * 9 8 6 11 11 H 1.09000 * 109.46986 * 299.99742 * 10 9 8 12 12 N 1.46496 * 109.47428 * 180.02562 * 10 9 8 13 13 C 1.38607 * 120.00393 * 84.99128 * 12 10 9 14 14 N 1.29691 * 124.94996 * 359.70519 * 13 12 10 15 15 C 1.32116 * 116.86766 * 179.81091 * 14 13 12 16 16 C 1.33329 * 114.57873 * 0.46895 * 15 14 13 17 17 C 1.50700 * 125.95000 * 179.75150 * 16 15 14 18 18 O 1.42895 * 109.47405 * 300.03227 * 17 16 15 19 19 Si 1.86295 * 109.47241 * 180.02562 * 17 16 15 20 20 S 1.70965 * 124.95314 * 180.02562 * 13 12 10 21 21 C 1.52997 * 109.47415 * 59.99860 * 10 9 8 22 22 C 1.52999 * 109.47000 * 185.00344 * 6 5 2 23 23 H 1.08997 * 109.47472 * 300.00236 * 1 2 3 24 24 H 1.09006 * 109.47009 * 60.00198 * 1 2 3 25 25 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46852 * 180.02562 * 4 2 1 27 27 H 1.08996 * 109.47316 * 299.99768 * 4 2 1 28 28 H 1.09003 * 109.46961 * 60.00570 * 4 2 1 29 29 H 1.09006 * 109.47351 * 305.00101 * 5 2 1 30 30 H 1.08998 * 109.47320 * 185.00317 * 5 2 1 31 31 H 1.09000 * 109.47140 * 60.00393 * 8 6 5 32 32 H 1.09001 * 109.47375 * 300.00376 * 8 6 5 33 33 H 1.08992 * 109.47534 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47134 * 59.99508 * 9 8 6 35 35 H 0.97005 * 119.99981 * 264.99973 * 12 10 9 36 36 H 1.07997 * 122.71022 * 180.22794 * 15 14 13 37 37 H 1.09011 * 109.47012 * 60.02786 * 17 16 15 38 38 H 0.96707 * 113.99706 * 299.99514 * 18 17 16 39 39 H 1.48489 * 110.00347 * 180.02562 * 19 17 16 40 40 H 1.48506 * 110.00113 * 301.32133 * 19 17 16 41 41 H 1.09001 * 109.46922 * 180.02562 * 21 10 9 42 42 H 1.09000 * 109.47140 * 59.99976 * 21 10 9 43 43 H 1.08993 * 109.47839 * 60.00073 * 22 6 5 44 44 H 1.09000 * 109.47160 * 299.99635 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6924 1.1995 5 6 1.9587 -0.6925 -1.1993 6 6 1.5540 0.0976 -2.4455 7 1 0.4750 0.2523 -2.4431 8 6 2.2636 1.4530 -2.4427 9 6 1.8585 2.2434 -3.6885 10 6 2.2581 1.4610 -4.9411 11 1 3.3371 1.3063 -4.9440 12 7 1.8708 2.2180 -6.1340 13 6 2.7134 3.1965 -6.6379 14 7 3.8602 3.5237 -6.1284 15 6 4.5356 4.4789 -6.7423 16 6 3.9268 4.9878 -7.8138 17 6 4.4610 6.0860 -8.6967 18 8 4.6620 7.2675 -7.9185 19 14 3.2385 6.4390 -10.0574 20 16 2.3888 4.1532 -8.0171 21 6 1.5485 0.1056 -4.9440 22 6 1.9541 -0.6851 -3.6978 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.0486 -0.6920 1.1997 27 1 1.5953 -0.1785 2.0894 28 1 1.5953 -1.7201 1.1995 29 1 1.5241 -1.6912 -1.2452 30 1 3.0450 -0.7708 -1.1556 31 1 3.3426 1.2983 -2.4452 32 1 1.9786 2.0106 -1.5505 33 1 2.3643 3.2088 -3.6868 34 1 0.7795 2.3981 -3.6857 35 1 1.0245 2.0345 -6.5713 36 1 5.5011 4.8225 -6.4015 37 1 5.4096 5.7725 -9.1329 38 1 3.8580 7.6040 -7.4995 39 1 3.7538 7.5199 -10.9355 40 1 2.9967 5.2096 -10.8545 41 1 1.8337 -0.4519 -5.8362 42 1 0.4696 0.2603 -4.9411 43 1 1.4486 -1.6507 -3.6999 44 1 3.0331 -0.8398 -3.7003 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17508096_15704118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:25:07 Heat of formation + Delta-G solvation = 115.623017 kcal Electronic energy + Delta-G solvation = -22584.388019 eV Core-core repulsion = 19362.149539 eV Total energy + Delta-G solvation = -3222.238480 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17020 -40.87210 -39.47148 -37.90281 -36.10984 -32.42637 -31.85997 -30.97736 -29.38657 -27.89173 -26.50856 -25.49758 -24.52093 -23.64146 -22.66518 -21.09410 -20.69058 -19.68502 -19.25133 -18.22816 -17.63110 -17.32827 -16.99228 -16.64028 -16.35993 -15.94258 -15.76106 -15.38882 -15.23271 -14.97241 -14.91288 -14.14157 -13.98587 -13.84530 -13.63855 -13.54256 -13.25650 -13.20171 -13.18692 -13.07079 -12.89708 -12.54036 -12.17374 -12.13559 -12.08586 -11.86731 -11.65304 -11.29932 -11.01205 -10.81895 -10.33821 -10.21574 -8.78160 -5.18591 -0.09768 -0.00367 0.62319 1.03386 1.21569 1.51127 1.85077 1.92312 2.12841 2.89309 2.99903 3.23788 3.46240 3.53590 3.55402 3.64507 3.74686 3.84393 3.88205 4.11312 4.15007 4.20113 4.28057 4.30079 4.33852 4.38767 4.42325 4.46454 4.51915 4.59877 4.65115 4.67873 4.77988 4.80870 4.87012 4.90508 4.93896 5.04789 5.12044 5.15808 5.19616 5.29969 5.42248 5.85275 6.11598 6.67812 6.94030 Molecular weight = 299.15amu Principal moments of inertia in cm(-1) A = 0.034675 B = 0.003047 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.293384 B = 9187.297208 C = 9543.791258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.375 5.375 3 H 0.432 0.568 4 C -0.047 4.047 5 C 0.002 3.998 6 C -0.106 4.106 7 H 0.113 0.887 8 C -0.122 4.122 9 C -0.127 4.127 10 C 0.156 3.844 11 H 0.065 0.935 12 N -0.685 5.685 13 C 0.320 3.680 14 N -0.569 5.569 15 C 0.105 3.895 16 C -0.309 4.309 17 C -0.010 4.010 18 O -0.550 6.550 19 Si 0.726 3.274 20 S 0.100 5.900 21 C -0.127 4.127 22 C -0.106 4.106 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.422 0.578 36 H 0.176 0.824 37 H 0.117 0.883 38 H 0.395 0.605 39 H -0.279 1.279 40 H -0.270 1.270 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 -15.773 26.788 32.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 N 0.048 4.952 3 H 0.269 0.731 4 C -0.189 4.189 5 C -0.121 4.121 6 C -0.125 4.125 7 H 0.131 0.869 8 C -0.160 4.160 9 C -0.166 4.166 10 C 0.049 3.951 11 H 0.084 0.916 12 N -0.325 5.325 13 C -0.051 4.051 14 N -0.296 5.296 15 C -0.046 4.046 16 C -0.432 4.432 17 C -0.125 4.125 18 O -0.357 6.357 19 Si 0.631 3.369 20 S 0.349 5.651 21 C -0.165 4.165 22 C -0.145 4.145 23 H 0.145 0.855 24 H 0.140 0.860 25 H 0.143 0.857 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.261 0.739 36 H 0.193 0.807 37 H 0.134 0.866 38 H 0.245 0.755 39 H -0.205 1.205 40 H -0.196 1.196 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.837 -16.407 25.648 32.318 hybrid contribution 1.440 0.573 -0.407 1.602 sum -9.397 -15.833 25.241 31.243 Atomic orbital electron populations 1.24228 0.76128 1.09876 1.09565 1.44911 1.16098 1.19393 1.14779 0.73070 1.24140 1.05672 1.02508 0.86556 1.23943 1.05896 0.99764 0.82448 1.21675 1.03118 0.94244 0.93438 0.86882 1.21750 1.01604 0.95036 0.97616 1.21855 1.01877 0.98603 0.94286 1.21197 0.99667 0.90855 0.83339 0.91638 1.44328 1.20559 1.36279 1.31330 1.23949 0.92442 0.94664 0.94068 1.66473 1.07197 1.21018 1.34881 1.21417 1.00246 0.91219 0.91668 1.25607 0.99739 1.10783 1.07113 1.24107 1.05964 0.83322 0.99062 1.86495 1.39451 1.40753 1.69043 0.94269 0.84752 0.79668 0.78231 1.84046 1.20024 1.33325 1.27656 1.21824 1.01368 0.93528 0.99829 1.21426 1.02521 0.98792 0.91756 0.85509 0.85982 0.85691 0.85891 0.85603 0.85937 0.83746 0.84462 0.90881 0.88881 0.93870 0.90606 0.73922 0.80673 0.86634 0.75487 1.20536 1.19576 0.92279 0.89670 0.89059 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.53 8.93 127.69 1.14 4.67 16 2 N -0.37 24.37 0.66 -948.84 -0.62 23.75 16 3 H 0.43 -28.92 6.62 -89.69 -0.59 -29.52 16 4 C -0.05 2.97 9.19 127.69 1.17 4.14 16 5 C 0.00 -0.09 4.12 86.31 0.36 0.26 16 6 C -0.11 5.58 2.07 -10.79 -0.02 5.56 16 7 H 0.11 -6.23 6.18 -2.39 -0.01 -6.25 16 8 C -0.12 5.68 4.96 30.59 0.15 5.83 16 9 C -0.13 4.47 5.51 30.59 0.17 4.63 16 10 C 0.16 -4.73 2.58 44.99 0.12 -4.62 16 11 H 0.07 -1.61 7.77 -2.39 -0.02 -1.63 16 12 N -0.69 17.10 5.23 -330.41 -1.73 15.37 16 13 C 0.32 -5.62 8.06 179.32 1.45 -4.17 16 14 N -0.57 7.83 9.91 -202.03 -2.00 5.83 16 15 C 0.11 -1.35 11.22 83.54 0.94 -0.41 16 16 C -0.31 4.29 5.74 24.58 0.14 4.43 16 17 C -0.01 0.14 2.98 71.24 0.21 0.35 16 18 O -0.55 7.12 12.87 -148.98 -1.92 5.21 16 19 Si 0.73 -9.68 31.05 68.60 2.13 -7.55 16 20 S 0.10 -1.67 20.57 -56.49 -1.16 -2.84 16 21 C -0.13 4.60 5.39 30.61 0.17 4.77 16 22 C -0.11 4.67 5.21 30.61 0.16 4.83 16 23 H 0.13 -7.97 8.14 -2.39 -0.02 -7.99 16 24 H 0.12 -7.60 6.19 -2.38 -0.01 -7.61 16 25 H 0.12 -7.84 8.11 -2.39 -0.02 -7.86 16 26 H 0.12 -7.68 8.11 -2.39 -0.02 -7.70 16 27 H 0.13 -7.90 8.14 -2.39 -0.02 -7.92 16 28 H 0.12 -7.66 8.14 -2.39 -0.02 -7.68 16 29 H 0.14 -8.97 8.09 -2.38 -0.02 -8.99 16 30 H 0.14 -8.33 8.09 -2.39 -0.02 -8.35 16 31 H 0.07 -3.17 8.14 -2.39 -0.02 -3.19 16 32 H 0.09 -4.91 6.63 -2.39 -0.02 -4.93 16 33 H 0.04 -1.14 8.14 -2.39 -0.02 -1.16 16 34 H 0.08 -2.77 8.14 -2.39 -0.02 -2.79 16 35 H 0.42 -12.04 8.73 -92.70 -0.81 -12.85 16 36 H 0.18 -2.45 8.06 -2.91 -0.02 -2.48 16 37 H 0.12 -1.44 7.96 -2.38 -0.02 -1.46 16 38 H 0.40 -8.22 8.70 -74.05 -0.64 -8.86 16 39 H -0.28 1.63 7.11 99.48 0.71 2.34 16 40 H -0.27 2.34 7.11 99.48 0.71 3.05 16 41 H 0.06 -1.83 8.14 -2.39 -0.02 -1.85 16 42 H 0.08 -3.25 8.14 -2.39 -0.02 -3.27 16 43 H 0.09 -4.12 8.14 -2.39 -0.02 -4.14 16 44 H 0.07 -2.85 8.14 -2.39 -0.02 -2.87 16 Total: 1.00 -75.74 351.12 -0.17 -75.91 By element: Atomic # 1 Polarization: -144.94 SS G_CDS: -1.01 Total: -145.95 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 6.14 Total: 30.28 kcal Atomic # 7 Polarization: 49.30 SS G_CDS: -4.35 Total: 44.95 kcal Atomic # 8 Polarization: 7.12 SS G_CDS: -1.92 Total: 5.21 kcal Atomic # 14 Polarization: -9.68 SS G_CDS: 2.13 Total: -7.55 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -1.16 Total: -2.84 kcal Total: -75.74 -0.17 -75.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17508096_15704118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.530 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds