Wall clock time and date at job start Mon Mar 8 2021 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 H 1.00900 * 109.47160 * 2 1 4 4 C 1.46901 * 109.47417 * 120.00120 * 2 1 3 5 5 C 1.46900 * 109.46724 * 240.00014 * 2 1 3 6 6 C 1.53004 * 109.47018 * 175.00206 * 5 2 1 7 7 H 1.08996 * 109.46998 * 54.99661 * 6 5 2 8 8 C 1.52996 * 109.47273 * 175.00111 * 6 5 2 9 9 C 1.52997 * 109.47497 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46729 * 300.00024 * 9 8 6 11 11 H 1.09007 * 109.47200 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47155 * 299.99615 * 10 9 8 13 13 C 1.38615 * 120.00055 * 205.00135 * 12 10 9 14 14 N 1.29691 * 124.94858 * 359.70131 * 13 12 10 15 15 C 1.32117 * 116.86203 * 179.84348 * 14 13 12 16 16 C 1.33321 * 114.58502 * 0.43390 * 15 14 13 17 17 C 1.50697 * 125.95532 * 179.79001 * 16 15 14 18 18 O 1.42896 * 109.47271 * 300.00451 * 17 16 15 19 19 Si 1.86306 * 109.47243 * 180.02562 * 17 16 15 20 20 S 1.70958 * 124.94905 * 179.97438 * 13 12 10 21 21 C 1.52995 * 109.47524 * 59.99759 * 10 9 8 22 22 C 1.52999 * 109.46701 * 294.99981 * 6 5 2 23 23 H 1.09006 * 109.47070 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46740 * 299.99789 * 1 2 3 25 25 H 1.08997 * 109.47502 * 60.00105 * 1 2 3 26 26 H 1.09008 * 109.46934 * 59.99584 * 4 2 1 27 27 H 1.08991 * 109.47281 * 179.97438 * 4 2 1 28 28 H 1.09005 * 109.46665 * 300.00182 * 4 2 1 29 29 H 1.08996 * 109.47575 * 54.99988 * 5 2 1 30 30 H 1.09003 * 109.47126 * 294.99945 * 5 2 1 31 31 H 1.09005 * 109.47504 * 59.99558 * 8 6 5 32 32 H 1.09006 * 109.46787 * 299.99904 * 8 6 5 33 33 H 1.08993 * 109.47649 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46964 * 59.99399 * 9 8 6 35 35 H 0.96999 * 119.99984 * 25.00030 * 12 10 9 36 36 H 1.08008 * 122.70416 * 180.21112 * 15 14 13 37 37 H 1.08998 * 109.47056 * 60.00557 * 17 16 15 38 38 H 0.96701 * 113.99860 * 299.99726 * 18 17 16 39 39 H 1.48505 * 109.99948 * 179.97438 * 19 17 16 40 40 H 1.48498 * 110.00003 * 301.32123 * 19 17 16 41 41 H 1.09005 * 109.47314 * 59.99924 * 21 10 9 42 42 H 1.09001 * 109.47831 * 179.97438 * 21 10 9 43 43 H 1.09005 * 109.46887 * 299.99713 * 22 6 5 44 44 H 1.08992 * 109.47727 * 59.99828 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9588 -0.6925 1.1994 5 6 1.9586 -0.6925 -1.1995 6 6 3.4835 -0.5846 -1.2640 7 1 3.9140 -0.9636 -0.3371 8 6 4.0038 -1.4096 -2.4427 9 6 5.5285 -1.3012 -2.5077 10 6 5.9281 0.1638 -2.6946 11 1 7.0144 0.2411 -2.7404 12 7 5.3489 0.6728 -3.9403 13 6 5.9436 1.7394 -4.5961 14 7 7.0078 2.3603 -4.1914 15 6 7.4405 3.3562 -4.9441 16 6 6.7029 3.5922 -6.0293 17 6 6.9590 4.6640 -7.0572 18 8 6.9231 5.9463 -6.4275 19 14 5.6471 4.5843 -8.3777 20 16 5.3773 2.4322 -6.0528 21 6 5.4078 0.9888 -1.5159 22 6 3.8836 0.8803 -1.4506 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.5954 -1.7202 1.1994 27 1 3.0487 -0.6929 1.1992 28 1 1.5954 -0.1786 2.0894 29 1 1.5240 -0.2331 -2.0872 30 1 1.6702 -1.7428 -1.1558 31 1 3.5731 -1.0307 -3.3697 32 1 3.7186 -2.4532 -2.3097 33 1 5.8992 -1.8893 -3.3471 34 1 5.9594 -1.6799 -1.5808 35 1 4.5493 0.2634 -4.3062 36 1 8.3188 3.9347 -4.6981 37 1 7.9389 4.5081 -7.5083 38 1 6.0786 6.1530 -6.0041 39 1 5.8881 5.6368 -9.3973 40 1 5.6524 3.2448 -9.0187 41 1 5.8388 0.6102 -0.5890 42 1 5.6929 2.0325 -1.6488 43 1 3.4530 1.2592 -2.3776 44 1 3.5129 1.4681 -0.6109 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17508148_15704118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:29:53 Heat of formation + Delta-G solvation = 119.345931 kcal Electronic energy + Delta-G solvation = -22985.205208 eV Core-core repulsion = 19763.128166 eV Total energy + Delta-G solvation = -3222.077042 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20940 -40.90909 -39.63911 -37.87404 -35.68353 -32.47506 -31.88921 -30.95414 -29.38378 -27.93727 -26.62207 -25.52505 -24.61841 -23.62653 -22.65975 -21.45763 -19.98854 -19.78803 -19.23522 -18.11105 -17.57918 -17.36870 -17.10820 -16.59638 -16.26410 -16.05863 -15.78060 -15.41899 -15.25052 -14.92766 -14.79220 -14.17027 -14.06203 -13.86433 -13.64949 -13.45869 -13.26411 -13.23737 -13.11106 -12.94263 -12.88821 -12.57044 -12.50826 -12.20116 -12.06695 -11.76247 -11.49485 -11.18633 -11.01409 -10.80170 -10.30979 -10.18897 -8.76368 -5.19599 -0.08582 0.00674 0.61570 1.04160 1.21713 1.52461 1.87369 1.94074 2.17520 2.88679 3.01012 3.24107 3.47291 3.53683 3.57108 3.65510 3.75088 3.88373 3.88858 4.06361 4.15085 4.20536 4.28548 4.31102 4.37427 4.38689 4.42419 4.44871 4.55970 4.58378 4.67663 4.71898 4.74228 4.85105 4.87697 4.88482 4.94927 5.08678 5.12518 5.16155 5.21476 5.32926 5.39560 5.83578 6.17286 6.69651 6.99506 Molecular weight = 299.15amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.003685 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.840633 B = 7596.450069 C = 7971.209856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.374 5.374 3 H 0.432 0.568 4 C -0.056 4.056 5 C 0.002 3.998 6 C -0.107 4.107 7 H 0.110 0.890 8 C -0.112 4.112 9 C -0.127 4.127 10 C 0.156 3.844 11 H 0.052 0.948 12 N -0.672 5.672 13 C 0.319 3.681 14 N -0.577 5.577 15 C 0.103 3.897 16 C -0.310 4.310 17 C -0.017 4.017 18 O -0.551 6.551 19 Si 0.738 3.262 20 S 0.117 5.883 21 C -0.128 4.128 22 C -0.123 4.123 23 H 0.122 0.878 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.125 0.875 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.423 0.577 36 H 0.169 0.831 37 H 0.112 0.888 38 H 0.395 0.605 39 H -0.282 1.282 40 H -0.267 1.267 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.948 -11.389 19.650 31.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.049 4.951 3 H 0.269 0.731 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.125 4.125 7 H 0.128 0.872 8 C -0.150 4.150 9 C -0.165 4.165 10 C 0.049 3.951 11 H 0.071 0.929 12 N -0.315 5.315 13 C -0.052 4.052 14 N -0.303 5.303 15 C -0.048 4.048 16 C -0.433 4.433 17 C -0.130 4.130 18 O -0.359 6.359 19 Si 0.642 3.358 20 S 0.366 5.634 21 C -0.167 4.167 22 C -0.160 4.160 23 H 0.140 0.860 24 H 0.142 0.858 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.264 0.736 36 H 0.186 0.814 37 H 0.129 0.871 38 H 0.245 0.755 39 H -0.209 1.209 40 H -0.193 1.193 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.143 -12.184 18.574 31.365 hybrid contribution 2.060 0.742 -0.110 2.192 sum -20.083 -11.442 18.464 29.583 Atomic orbital electron populations 1.24144 0.75392 1.09667 1.09674 1.44906 1.16110 1.19257 1.14865 0.73091 1.24218 1.05805 1.02743 0.87049 1.23961 0.95934 1.03678 0.88460 1.21665 0.93137 0.95968 1.01777 0.87171 1.21485 0.93587 1.01609 0.98285 1.21815 0.98088 0.93063 1.03561 1.21027 0.97361 0.94057 0.82656 0.92942 1.44229 1.30760 1.31072 1.25393 1.23989 0.93289 0.93983 0.93932 1.66474 1.15160 1.13322 1.35331 1.21357 0.99831 0.93334 0.90259 1.25619 1.03239 1.08481 1.05970 1.24212 1.08247 0.81454 0.99104 1.86507 1.42034 1.31905 1.75447 0.94335 0.84442 0.78788 0.78268 1.83795 1.28913 1.28950 1.21777 1.21816 0.97569 0.99588 0.97728 1.21737 0.94788 0.95904 1.03584 0.85972 0.85767 0.85648 0.85713 0.86086 0.85607 0.84096 0.83821 0.90865 0.89130 0.92220 0.89181 0.73612 0.81421 0.87110 0.75469 1.20850 1.19336 0.90039 0.93874 0.90749 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 3.02 9.19 127.69 1.17 4.19 16 2 N -0.37 24.71 0.66 -948.81 -0.62 24.08 16 3 H 0.43 -29.29 6.62 -89.69 -0.59 -29.88 16 4 C -0.06 3.55 8.93 127.69 1.14 4.70 16 5 C 0.00 -0.10 4.12 86.30 0.36 0.25 16 6 C -0.11 5.75 2.07 -10.79 -0.02 5.73 16 7 H 0.11 -6.11 6.18 -2.39 -0.01 -6.12 16 8 C -0.11 5.14 5.03 30.59 0.15 5.29 16 9 C -0.13 4.63 5.61 30.59 0.17 4.80 16 10 C 0.16 -4.76 2.91 44.99 0.13 -4.63 16 11 H 0.05 -1.12 7.77 -2.38 -0.02 -1.14 16 12 N -0.67 19.68 4.38 -330.41 -1.45 18.23 16 13 C 0.32 -6.53 8.06 179.32 1.45 -5.08 16 14 N -0.58 8.07 9.91 -202.03 -2.00 6.07 16 15 C 0.10 -1.33 11.22 83.54 0.94 -0.39 16 16 C -0.31 4.78 5.74 24.57 0.14 4.92 16 17 C -0.02 0.24 2.99 71.23 0.21 0.46 16 18 O -0.55 7.67 12.87 -148.98 -1.92 5.76 16 19 Si 0.74 -11.63 31.05 68.60 2.13 -9.50 16 20 S 0.12 -2.40 20.57 -56.49 -1.16 -3.57 16 21 C -0.13 4.52 5.61 30.58 0.17 4.70 16 22 C -0.12 5.86 4.80 30.58 0.15 6.01 16 23 H 0.12 -7.76 8.14 -2.38 -0.02 -7.78 16 24 H 0.12 -7.88 8.14 -2.39 -0.02 -7.90 16 25 H 0.13 -8.03 8.11 -2.39 -0.02 -8.05 16 26 H 0.12 -7.86 8.11 -2.38 -0.02 -7.88 16 27 H 0.12 -7.53 6.18 -2.39 -0.01 -7.54 16 28 H 0.13 -7.92 8.14 -2.38 -0.02 -7.94 16 29 H 0.14 -8.92 8.09 -2.39 -0.02 -8.94 16 30 H 0.14 -9.12 8.09 -2.39 -0.02 -9.14 16 31 H 0.07 -3.37 6.50 -2.38 -0.02 -3.39 16 32 H 0.09 -4.23 8.14 -2.38 -0.02 -4.25 16 33 H 0.06 -1.87 8.14 -2.39 -0.02 -1.89 16 34 H 0.09 -3.32 8.14 -2.38 -0.02 -3.34 16 35 H 0.42 -14.86 6.99 -92.71 -0.65 -15.51 16 36 H 0.17 -2.13 8.06 -2.91 -0.02 -2.15 16 37 H 0.11 -1.42 7.96 -2.39 -0.02 -1.44 16 38 H 0.40 -8.87 8.70 -74.06 -0.64 -9.51 16 39 H -0.28 2.18 7.11 99.48 0.71 2.88 16 40 H -0.27 3.07 7.11 99.48 0.71 3.78 16 41 H 0.08 -2.95 8.14 -2.38 -0.02 -2.97 16 42 H 0.04 -1.15 8.14 -2.39 -0.02 -1.17 16 43 H 0.07 -3.41 7.60 -2.38 -0.02 -3.43 16 44 H 0.09 -4.74 6.63 -2.39 -0.02 -4.75 16 Total: 1.00 -77.71 346.68 0.29 -77.42 By element: Atomic # 1 Polarization: -148.60 SS G_CDS: -0.84 Total: -149.44 kcal Atomic # 6 Polarization: 24.78 SS G_CDS: 6.16 Total: 30.94 kcal Atomic # 7 Polarization: 52.46 SS G_CDS: -4.07 Total: 48.38 kcal Atomic # 8 Polarization: 7.67 SS G_CDS: -1.92 Total: 5.76 kcal Atomic # 14 Polarization: -11.63 SS G_CDS: 2.13 Total: -9.50 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -1.16 Total: -3.57 kcal Total: -77.71 0.29 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17508148_15704118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.767 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds