Wall clock time and date at job start Mon Mar 8 2021 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52971 * 109.43767 * 2 1 4 4 C 1.53124 * 109.44368 * 181.69366 * 3 2 1 5 5 C 1.52835 * 109.21901 * 301.99082 * 4 3 2 6 6 C 1.53243 * 113.40971 * 286.00946 * 5 4 3 7 7 C 1.53557 * 83.49082 * 219.26315 * 6 5 4 8 8 N 1.47169 * 113.47151 * 187.28677 * 5 4 3 9 9 C 1.38610 * 111.00082 * 253.31597 * 8 5 4 10 10 N 1.29679 * 124.94935 * 251.08637 * 9 8 5 11 11 C 1.32127 * 116.86760 * 180.02562 * 10 9 8 12 12 C 1.33330 * 114.57599 * 0.02562 * 11 10 9 13 13 C 1.50696 * 125.94734 * 180.02562 * 12 11 10 14 14 O 1.42902 * 109.47102 * 120.02110 * 13 12 11 15 15 Si 1.86299 * 109.47428 * 0.02562 * 13 12 11 16 16 S 1.70975 * 124.94792 * 71.44428 * 9 8 5 17 17 C 1.52840 * 112.70059 * 56.58361 * 5 4 3 18 18 C 1.52973 * 109.43521 * 120.21406 * 2 1 3 19 19 H 1.09001 * 109.47025 * 60.00161 * 1 2 3 20 20 H 1.09002 * 109.46905 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47257 * 300.00322 * 1 2 3 22 22 H 1.09006 * 109.40311 * 240.10352 * 2 1 3 23 23 H 1.08996 * 109.47740 * 61.69637 * 3 2 1 24 24 H 1.09003 * 109.48193 * 301.68337 * 3 2 1 25 25 H 1.09004 * 109.51167 * 182.07055 * 4 3 2 26 26 H 1.08997 * 109.55242 * 61.93942 * 4 3 2 27 27 H 1.09002 * 114.17881 * 332.88520 * 6 5 4 28 28 H 1.08996 * 114.18745 * 105.44200 * 6 5 4 29 29 H 1.08997 * 113.46621 * 270.99458 * 7 6 5 30 30 H 1.09001 * 113.46582 * 140.55555 * 7 6 5 31 31 H 1.07995 * 122.70763 * 179.97438 * 11 10 9 32 32 H 1.09001 * 109.46847 * 240.02366 * 13 12 11 33 33 H 0.96690 * 114.00254 * 299.99492 * 14 13 12 34 34 H 1.48499 * 110.00312 * 180.02562 * 15 13 12 35 35 H 1.48495 * 109.99956 * 301.32108 * 15 13 12 36 36 H 1.09006 * 109.50563 * 63.35093 * 17 5 4 37 37 H 1.08993 * 109.51882 * 183.50048 * 17 5 4 38 38 H 1.08998 * 109.47295 * 298.31048 * 18 2 1 39 39 H 1.09002 * 109.47594 * 58.31692 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0390 1.4425 0.0000 4 6 3.5697 1.4429 -0.0427 5 6 4.1067 0.6664 1.1592 6 6 3.9775 1.4277 2.4829 7 6 5.3603 0.8223 2.7645 8 7 5.5686 0.7505 1.3057 9 6 6.1731 -0.4446 0.9485 10 7 6.7295 -1.2725 1.7772 11 6 7.2599 -2.3674 1.2617 12 6 7.1464 -2.4679 -0.0629 13 6 7.6566 -3.6044 -0.9108 14 8 6.5629 -4.2115 -1.6017 15 14 8.4821 -4.8702 0.1787 16 16 6.3016 -1.0378 -0.6499 17 6 3.5696 -0.7629 1.2258 18 6 2.0390 -0.7259 1.2466 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8921 -0.5125 -0.8913 23 1 1.7005 1.9474 0.9047 24 1 1.6510 1.9650 -0.8745 25 1 3.9347 2.4693 -0.0056 26 1 3.9090 0.9688 -0.9636 27 1 3.9784 2.5125 2.3760 28 1 3.1846 1.0599 3.1341 29 1 5.3166 -0.1549 3.2453 30 1 6.0410 1.5097 3.2667 31 1 7.7467 -3.1196 1.8646 32 1 8.3768 -3.2229 -1.6345 33 1 5.8819 -4.5739 -1.0188 34 1 8.9901 -5.9961 -0.6456 35 1 9.6013 -4.2437 0.9270 36 1 3.9085 -1.3202 0.3524 37 1 3.9344 -1.2472 2.1316 38 1 1.7003 -0.1982 2.1381 39 1 1.6509 -1.7445 1.2579 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17514092_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:55:33 Heat of formation + Delta-G solvation = 49.789866 kcal Electronic energy + Delta-G solvation = -21077.374762 eV Core-core repulsion = 18114.212291 eV Total energy + Delta-G solvation = -2963.162472 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.91741 -40.38445 -38.24635 -37.70516 -32.98048 -32.00440 -31.77359 -30.20931 -26.97700 -26.16523 -24.64728 -24.18438 -23.29826 -21.66717 -20.89870 -19.80536 -18.92095 -17.87930 -17.60143 -17.08580 -16.49342 -16.01809 -15.92575 -15.45360 -15.29016 -15.17020 -14.88063 -14.49308 -14.07300 -14.00286 -13.49537 -13.34882 -13.25002 -13.02642 -12.88691 -12.68027 -12.45885 -12.23318 -12.19120 -12.08524 -11.66434 -11.63529 -11.39269 -11.16457 -10.85731 -10.69957 -10.52879 -10.14304 -9.35870 -5.14166 -0.38628 0.08272 0.67761 1.33407 1.54835 1.69168 1.89966 2.58049 3.11313 3.30686 3.38303 3.52667 3.67093 3.70097 3.79355 3.90868 3.99469 4.15280 4.17531 4.24619 4.31980 4.39694 4.43671 4.47063 4.58111 4.61514 4.66546 4.72550 4.79939 4.86013 4.88777 4.91918 5.03472 5.05919 5.07817 5.10567 5.14642 5.27649 5.32717 5.44922 5.85195 6.40888 6.65710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.110 4.110 4 C -0.100 4.100 5 C 0.072 3.928 6 C -0.137 4.137 7 C 0.019 3.981 8 N -0.399 5.399 9 C 0.197 3.803 10 N -0.505 5.505 11 C 0.066 3.934 12 C -0.281 4.281 13 C -0.030 4.030 14 O -0.538 6.538 15 Si 0.705 3.295 16 S 0.178 5.822 17 C -0.128 4.128 18 C -0.106 4.106 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.177 0.823 32 H 0.117 0.883 33 H 0.380 0.620 34 H -0.248 1.248 35 H -0.253 1.253 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 -0.896 1.743 4.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.149 4.149 4 C -0.138 4.138 5 C -0.018 4.018 6 C -0.175 4.175 7 C -0.111 4.111 8 N -0.119 5.119 9 C -0.171 4.171 10 N -0.224 5.224 11 C -0.087 4.087 12 C -0.403 4.403 13 C -0.143 4.143 14 O -0.343 6.343 15 Si 0.604 3.396 16 S 0.434 5.566 17 C -0.167 4.167 18 C -0.144 4.144 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.194 0.806 32 H 0.135 0.865 33 H 0.228 0.772 34 H -0.173 1.173 35 H -0.177 1.177 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.729 -0.095 0.603 2.797 hybrid contribution 0.448 -0.581 0.490 0.883 sum -2.281 -0.677 1.093 2.619 Atomic orbital electron populations 1.21829 0.94870 1.01892 1.01977 1.21155 0.95753 0.96046 0.98349 1.21571 0.94155 0.96519 1.02605 1.21457 0.95722 1.00351 0.96231 1.22757 0.84706 0.96601 0.97715 1.23304 0.97401 1.01164 0.95591 1.23760 0.96982 1.02701 0.87614 1.66458 1.10011 1.21507 1.13897 1.25759 1.01242 0.95285 0.94806 1.66835 1.15380 1.03376 1.36831 1.21487 1.00046 0.95726 0.91471 1.26433 1.12684 1.02843 0.98333 1.24542 0.93765 0.95721 1.00240 1.86523 1.34069 1.77226 1.36464 0.94649 0.83595 0.79261 0.82085 1.84162 1.52256 1.12797 1.07409 1.21956 0.97361 0.94374 1.03026 1.21528 0.93507 1.00951 0.98437 0.92526 0.92600 0.92585 0.91127 0.91439 0.91267 0.90525 0.91684 0.88234 0.89399 0.88626 0.88829 0.80615 0.86546 0.77207 1.17273 1.17717 0.90943 0.90958 0.91438 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.25 9.19 37.16 0.34 0.59 16 2 C -0.09 0.14 2.67 -90.65 -0.24 -0.10 16 3 C -0.11 0.17 5.12 -26.68 -0.14 0.04 16 4 C -0.10 0.06 5.39 -26.75 -0.14 -0.08 16 5 C 0.07 -0.02 0.69 -136.27 -0.09 -0.12 16 6 C -0.14 0.17 7.13 -26.32 -0.19 -0.02 16 7 C 0.02 0.01 7.06 -7.97 -0.06 -0.05 16 8 N -0.40 -0.69 6.31 -171.13 -1.08 -1.77 16 9 C 0.20 0.48 4.89 -87.69 -0.43 0.05 16 10 N -0.51 -1.45 9.14 -15.21 -0.14 -1.59 16 11 C 0.07 0.08 10.07 -19.14 -0.19 -0.11 16 12 C -0.28 -0.24 5.93 -36.02 -0.21 -0.46 16 13 C -0.03 0.01 3.08 36.00 0.11 0.12 16 14 O -0.54 0.01 12.88 -35.23 -0.45 -0.44 16 15 Si 0.70 -1.05 30.49 -169.99 -5.18 -6.23 16 16 S 0.18 0.30 21.89 -107.50 -2.35 -2.05 16 17 C -0.13 0.07 3.84 -26.75 -0.10 -0.03 16 18 C -0.11 0.17 5.11 -26.68 -0.14 0.03 16 19 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 20 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 21 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 22 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 23 H 0.07 -0.12 7.94 -51.93 -0.41 -0.53 16 24 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 25 H 0.08 -0.03 8.12 -51.93 -0.42 -0.45 16 26 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.10 -0.16 8.10 -51.93 -0.42 -0.58 16 28 H 0.09 -0.19 7.35 -51.93 -0.38 -0.57 16 29 H 0.10 0.10 6.34 -51.93 -0.33 -0.23 16 30 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.18 -0.19 5.85 -52.49 -0.31 -0.50 16 32 H 0.12 0.04 7.96 -51.93 -0.41 -0.38 16 33 H 0.38 -1.47 8.70 45.56 0.40 -1.08 16 34 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 35 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 36 H 0.07 0.02 6.44 -51.93 -0.33 -0.32 16 37 H 0.07 0.02 6.92 -51.93 -0.36 -0.34 16 38 H 0.07 -0.12 7.35 -51.93 -0.38 -0.50 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 LS Contribution 311.27 15.07 4.69 4.69 Total: 0.00 -4.78 311.27 -11.94 -16.72 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: -5.94 Total: -9.18 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.48 Total: -0.15 kcal Atomic # 7 Polarization: -2.14 SS G_CDS: -1.22 Total: -3.36 kcal Atomic # 8 Polarization: 0.01 SS G_CDS: -0.45 Total: -0.44 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.18 Total: -6.23 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.35 Total: -2.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -4.78 -11.94 -16.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17514092_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.508 kcal (2) G-P(sol) polarization free energy of solvation -4.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds