Wall clock time and date at job start Mon Mar 8 2021 07:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86302 * 109.47091 * 2 1 4 4 C 1.50702 * 109.47068 * 119.99673 * 2 1 3 5 5 C 1.38605 * 120.71870 * 65.00307 * 4 2 1 6 6 N 1.32275 * 119.19319 * 180.02562 * 5 4 2 7 7 C 1.32489 * 120.74858 * 0.02562 * 6 5 4 8 8 N 1.38402 * 119.22375 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00123 * 179.97438 * 8 7 6 10 10 H 1.09002 * 112.85132 * 25.32910 * 9 8 7 11 11 C 1.53781 * 113.61711 * 156.52648 * 9 8 7 12 12 C 1.53785 * 87.08277 * 89.19510 * 11 9 8 13 13 H 1.08995 * 113.61449 * 270.88726 * 12 11 9 14 14 C 1.52995 * 113.61100 * 140.06519 * 12 11 9 15 15 N 1.47308 * 110.60225 * 294.17446 * 14 12 11 16 16 C 1.34526 * 106.62291 * 241.47382 * 15 14 12 17 17 O 1.21539 * 123.77154 * 179.97438 * 16 15 14 18 18 N 1.33794 * 112.45617 * 0.02562 * 16 15 14 19 19 C 1.34768 * 111.64547 * 359.97438 * 18 16 15 20 20 O 1.21233 * 127.16076 * 180.02562 * 19 18 16 21 21 C 1.53776 * 87.07661 * 25.43397 * 12 11 9 22 22 N 1.32502 * 121.55743 * 0.27033 * 7 6 5 23 23 C 1.32273 * 120.74234 * 359.44818 * 22 7 6 24 24 H 0.96707 * 114.00733 * 300.00181 * 1 2 3 25 25 H 1.08997 * 109.47490 * 239.99922 * 2 1 3 26 26 H 1.48496 * 110.00212 * 178.67968 * 3 2 1 27 27 H 1.48504 * 109.99755 * 299.99829 * 3 2 1 28 28 H 1.08002 * 120.40324 * 0.04514 * 5 4 2 29 29 H 0.96998 * 120.00024 * 359.97438 * 8 7 6 30 30 H 1.08993 * 113.62030 * 203.74957 * 11 9 8 31 31 H 1.09006 * 113.61033 * 334.65409 * 11 9 8 32 32 H 1.08999 * 110.53732 * 57.17793 * 14 12 11 33 33 H 0.96999 * 126.68757 * 61.45551 * 15 14 12 34 34 H 0.97002 * 124.17583 * 179.97438 * 18 16 15 35 35 H 1.09003 * 113.61687 * 220.01420 * 21 12 11 36 36 H 1.09009 * 113.61565 * 89.11769 * 21 12 11 37 37 H 1.08003 * 120.39721 * 180.29881 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6925 -2.0633 1.4141 6 7 2.1469 -2.6563 2.5057 7 6 2.8223 -1.9720 3.4172 8 7 3.2836 -2.6243 4.5473 9 6 4.0328 -1.8843 5.5657 10 1 3.8005 -0.8193 5.5716 11 6 3.9840 -2.5330 6.9592 12 6 5.2329 -3.3295 6.5457 13 1 5.0047 -4.2759 6.0555 14 6 6.2659 -3.4739 7.6649 15 7 6.8371 -2.1621 8.0156 16 6 8.1561 -2.2363 7.7614 17 8 8.9315 -1.3178 7.9414 18 7 8.5186 -3.4337 7.2875 19 6 7.4648 -4.2675 7.1845 20 8 7.4738 -5.4138 6.7901 21 6 5.5407 -2.1861 5.5645 22 7 3.0624 -0.6767 3.2747 23 6 2.6407 -0.0246 2.2040 24 1 -0.3935 0.4417 0.7650 25 1 1.7923 -0.5138 -0.8899 26 1 3.5345 1.7704 0.0322 27 1 1.5614 2.4678 -1.2086 28 1 1.1425 -2.6265 0.6747 29 1 3.1109 -3.5715 4.6649 30 1 4.1633 -1.8317 7.7739 31 1 3.1034 -3.1549 7.1207 32 1 5.8186 -3.9462 8.5395 33 1 6.3559 -1.3944 8.3619 34 1 9.4277 -3.6723 7.0476 35 1 5.9169 -2.5275 4.6002 36 1 6.1457 -1.3896 5.9980 37 1 2.8437 1.0302 2.0913 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17522898_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:58:55 Heat of formation + Delta-G solvation = 19.332014 kcal Electronic energy + Delta-G solvation = -24584.178033 eV Core-core repulsion = 20751.523404 eV Total energy + Delta-G solvation = -3832.654629 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.55423 -42.12798 -40.31618 -39.73393 -38.01245 -37.24512 -35.65866 -34.75438 -34.28870 -32.01942 -29.59971 -26.84406 -26.65258 -25.97181 -24.83854 -23.80674 -23.20468 -22.50503 -20.49798 -19.57046 -19.30813 -18.50572 -18.06520 -17.97501 -17.68472 -17.05074 -16.74972 -16.59617 -16.30004 -16.13197 -15.84167 -15.64655 -15.44263 -15.33479 -15.03081 -14.69453 -14.54001 -14.09742 -13.56720 -13.29052 -13.15537 -12.53308 -12.31487 -12.26544 -11.94080 -11.90100 -11.77929 -11.53258 -11.44401 -11.36224 -11.09060 -10.54549 -10.46766 -10.05179 -9.12120 -5.00229 0.03619 0.11940 0.50404 1.31834 1.40969 1.64346 1.78290 1.91995 1.99344 2.14041 2.76834 2.88734 3.13550 3.40926 3.46209 3.53363 3.59730 3.66573 3.71003 3.79177 3.81996 4.17549 4.22296 4.23181 4.38867 4.55620 4.65939 4.74230 4.75024 4.83338 4.95572 4.99314 5.04467 5.12404 5.35822 5.77733 5.79172 5.86390 6.04296 6.34641 6.38242 6.79358 7.08659 7.25598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.047 4.047 3 Si 0.769 3.231 4 C -0.287 4.287 5 C 0.211 3.789 6 N -0.591 5.591 7 C 0.553 3.447 8 N -0.674 5.674 9 C 0.135 3.865 10 H 0.106 0.894 11 C -0.116 4.116 12 C -0.109 4.109 13 H 0.113 0.887 14 C 0.113 3.887 15 N -0.698 5.698 16 C 0.704 3.296 17 O -0.586 6.586 18 N -0.679 5.679 19 C 0.528 3.472 20 O -0.499 6.499 21 C -0.153 4.153 22 N -0.573 5.573 23 C 0.195 3.805 24 H 0.395 0.605 25 H 0.112 0.888 26 H -0.286 1.286 27 H -0.296 1.296 28 H 0.180 0.820 29 H 0.419 0.581 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.454 0.546 34 H 0.436 0.564 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 2.068 3.964 6.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.159 4.159 3 Si 0.675 3.325 4 C -0.296 4.296 5 C 0.044 3.956 6 N -0.313 5.313 7 C 0.197 3.803 8 N -0.310 5.310 9 C 0.029 3.971 10 H 0.124 0.876 11 C -0.154 4.154 12 C -0.128 4.128 13 H 0.131 0.869 14 C 0.005 3.995 15 N -0.364 5.364 16 C 0.404 3.596 17 O -0.463 6.463 18 N -0.349 5.349 19 C 0.315 3.685 20 O -0.370 6.370 21 C -0.192 4.192 22 N -0.296 5.296 23 C 0.028 3.972 24 H 0.245 0.755 25 H 0.130 0.870 26 H -0.213 1.213 27 H -0.224 1.224 28 H 0.197 0.803 29 H 0.257 0.743 30 H 0.142 0.858 31 H 0.113 0.887 32 H 0.185 0.815 33 H 0.302 0.698 34 H 0.278 0.722 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.679 1.821 3.911 5.670 hybrid contribution 0.384 -0.572 -1.285 1.458 sum -3.295 1.249 2.626 4.395 Atomic orbital electron populations 1.86483 1.17144 1.82075 1.50479 1.24790 0.85173 1.10077 0.95837 0.94000 0.77762 0.75126 0.85584 1.21771 1.08560 0.97449 1.01782 1.23126 0.89230 0.91716 0.91518 1.67987 1.17488 1.40643 1.05160 1.19638 0.87337 0.85900 0.87471 1.43893 1.57720 1.12052 1.17364 1.21820 0.90245 0.97465 0.87570 0.87595 1.23371 0.97031 0.99228 0.95774 1.22916 0.95200 1.00022 0.94688 0.86925 1.22102 0.92520 0.83046 1.01861 1.45460 1.05942 1.16563 1.68438 1.15942 0.84238 0.81912 0.77544 1.91076 1.55847 1.40311 1.59027 1.44387 1.14365 1.14205 1.61940 1.21244 0.86408 0.85411 0.75405 1.90870 1.85340 1.16405 1.44426 1.23589 0.97737 0.98914 0.98948 1.67950 1.27384 1.08286 1.25934 1.23187 0.87579 1.00222 0.86231 0.75499 0.87042 1.21302 1.22416 0.80263 0.74291 0.85767 0.88697 0.81465 0.69846 0.72155 0.93260 0.88178 0.79438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.53 12.85 -148.98 -1.91 -0.39 16 2 C -0.05 0.16 2.83 71.24 0.20 0.36 16 3 Si 0.77 -3.58 29.88 68.60 2.05 -1.53 16 4 C -0.29 0.39 5.36 -19.69 -0.11 0.29 16 5 C 0.21 0.30 10.99 84.71 0.93 1.23 16 6 N -0.59 -2.73 10.46 -197.99 -2.07 -4.80 16 7 C 0.55 1.83 8.43 261.49 2.20 4.03 16 8 N -0.67 1.42 5.42 -327.93 -1.78 -0.36 16 9 C 0.14 -0.85 4.31 45.52 0.20 -0.66 16 10 H 0.11 -0.47 7.40 -2.39 -0.02 -0.49 16 11 C -0.12 1.50 7.31 31.12 0.23 1.73 16 12 C -0.11 1.07 3.52 -10.27 -0.04 1.03 16 13 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 14 C 0.11 -1.11 3.70 44.37 0.16 -0.94 16 15 N -0.70 6.07 4.46 -459.61 -2.05 4.02 16 16 C 0.70 -0.11 8.92 179.44 1.60 1.49 16 17 O -0.59 -5.41 18.04 -3.84 -0.07 -5.48 16 18 N -0.68 1.35 5.70 -441.11 -2.52 -1.16 16 19 C 0.53 -1.08 8.14 87.94 0.72 -0.36 16 20 O -0.50 -2.64 18.02 -2.89 -0.05 -2.69 16 21 C -0.15 0.85 7.27 31.12 0.23 1.08 16 22 N -0.57 -1.44 9.15 -197.99 -1.81 -3.25 16 23 C 0.20 -0.23 9.92 84.71 0.84 0.61 16 24 H 0.40 -4.14 8.70 -74.05 -0.64 -4.78 16 25 H 0.11 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H -0.29 -0.16 7.11 99.48 0.71 0.55 16 27 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 28 H 0.18 -0.33 8.06 -2.91 -0.02 -0.35 16 29 H 0.42 -1.67 8.82 -92.71 -0.82 -2.49 16 30 H 0.12 -2.12 7.69 -2.39 -0.02 -2.14 16 31 H 0.09 -1.29 8.14 -2.38 -0.02 -1.31 16 32 H 0.17 -2.56 8.14 -2.39 -0.02 -2.58 16 33 H 0.45 -5.95 8.65 -92.71 -0.80 -6.75 16 34 H 0.44 -1.48 8.96 -92.71 -0.83 -2.31 16 35 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.10 -0.57 6.73 -2.38 -0.02 -0.58 16 37 H 0.19 -1.31 5.07 -2.91 -0.01 -1.32 16 Total: 0.00 -26.93 319.51 -4.91 -31.84 By element: Atomic # 1 Polarization: -24.23 SS G_CDS: -1.87 Total: -26.09 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 7.17 Total: 9.89 kcal Atomic # 7 Polarization: 4.67 SS G_CDS: -10.22 Total: -5.56 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -2.04 Total: -8.55 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.05 Total: -1.53 kcal Total: -26.93 -4.91 -31.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17522898_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.175 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds