Wall clock time and date at job start Mon Mar 8 2021 07:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99798 * 2 1 4 4 O 1.20824 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99900 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46912 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 3 8 8 H 1.08993 * 112.85258 * 43.79888 * 7 6 5 9 9 C 1.53782 * 113.61585 * 175.00132 * 7 6 5 10 10 C 1.53780 * 87.08566 * 139.97549 * 9 7 6 11 11 H 1.08988 * 113.61591 * 220.01949 * 10 9 7 12 12 N 1.46498 * 113.61229 * 89.19749 * 10 9 7 13 13 C 1.38614 * 119.99923 * 155.00314 * 12 10 9 14 14 N 1.29681 * 124.94746 * 179.71908 * 13 12 10 15 15 C 1.32127 * 116.86564 * 179.81066 * 14 13 12 16 16 C 1.50693 * 122.71291 * 180.22543 * 15 14 13 17 17 O 1.42907 * 109.47030 * 150.26946 * 16 15 14 18 18 Si 1.86299 * 109.47297 * 30.27166 * 16 15 14 19 19 C 1.33325 * 114.57356 * 0.47947 * 15 14 13 20 20 C 1.50701 * 125.94845 * 179.75161 * 19 15 14 21 21 S 1.70967 * 124.94781 * 0.02562 * 13 12 10 22 22 C 1.53787 * 113.61117 * 272.49572 * 7 6 5 23 23 H 1.08993 * 109.47391 * 299.99599 * 1 2 3 24 24 H 1.09000 * 109.47246 * 59.99772 * 1 2 3 25 25 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47152 * 60.00249 * 5 3 2 27 27 H 1.09001 * 109.46980 * 300.00350 * 5 3 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 6 5 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 6 5 3 30 30 H 1.09003 * 113.61406 * 254.52885 * 9 7 6 31 31 H 1.09004 * 113.61459 * 25.42609 * 9 7 6 32 32 H 0.97004 * 120.00569 * 335.00174 * 12 10 9 33 33 H 1.08996 * 109.47375 * 270.27041 * 16 15 14 34 34 H 0.96696 * 113.99884 * 180.02562 * 17 16 15 35 35 H 1.48502 * 109.99831 * 298.68199 * 18 16 15 36 36 H 1.48500 * 110.00144 * 59.99799 * 18 16 15 37 37 H 1.08997 * 109.47447 * 179.97438 * 20 19 15 38 38 H 1.08997 * 109.47023 * 299.97186 * 20 19 15 39 39 H 1.09003 * 109.47099 * 59.97250 * 20 19 15 40 40 H 1.09002 * 113.61591 * 334.56363 * 22 7 6 41 41 H 1.08998 * 113.61477 * 105.46999 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 6 5.5280 2.8222 0.0011 8 1 5.9886 2.1207 -0.6944 9 6 6.0697 4.2563 -0.1212 10 6 7.1384 3.8566 0.9098 11 1 7.3499 4.6345 1.6433 12 7 8.3513 3.2952 0.3101 13 6 9.5577 3.3681 0.9889 14 7 10.6854 2.8999 0.5520 15 6 11.7405 3.0607 1.3308 16 6 13.1149 2.5729 0.9512 17 8 14.1016 3.4179 1.5466 18 14 13.2986 2.6143 -0.9023 19 6 11.4900 3.6848 2.4820 20 6 12.4989 3.9965 3.5572 21 16 9.7743 4.0817 2.5273 22 6 6.1464 2.7927 1.4088 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.9564 0.7806 -0.8892 27 1 3.9557 0.7809 0.8908 28 1 3.6107 3.2364 -0.8889 29 1 3.6100 3.2360 0.8910 30 1 6.4772 4.4866 -1.1056 31 1 5.3774 5.0168 0.2399 32 1 8.3104 2.8723 -0.5619 33 1 13.2489 1.5513 1.3068 34 1 15.0120 3.1627 1.3440 35 1 12.2987 1.7149 -1.5320 36 1 13.1180 4.0018 -1.3997 37 1 12.0048 4.5121 4.3807 38 1 12.9396 3.0686 3.9218 39 1 13.2820 4.6341 3.1469 40 1 5.4751 3.1531 2.1883 41 1 6.6158 1.8415 1.6596 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17523012_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:59:16 Heat of formation + Delta-G solvation = -46.309953 kcal Electronic energy + Delta-G solvation = -23146.631573 eV Core-core repulsion = 19541.937516 eV Total energy + Delta-G solvation = -3604.694057 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61943 -41.22009 -40.50507 -37.78335 -37.61398 -35.85705 -33.77044 -32.39224 -29.49868 -28.96058 -26.96910 -26.66217 -25.65688 -24.40361 -23.52985 -21.67027 -20.81692 -20.27105 -19.16678 -18.67782 -18.09597 -17.73117 -17.57170 -17.41487 -16.69830 -16.35059 -15.97770 -15.72445 -15.59070 -15.17288 -14.78015 -14.47293 -14.31159 -14.26756 -14.01840 -13.89322 -13.60826 -13.46943 -13.34540 -13.09800 -13.03811 -12.73325 -12.35704 -12.23071 -11.96960 -11.88721 -11.86664 -11.67063 -11.40421 -11.18016 -11.02772 -10.78343 -10.41710 -10.06761 -8.71130 -4.96054 -0.11635 0.03930 0.64058 1.11028 1.27234 1.66718 1.73950 1.75831 1.79206 2.20826 3.11471 3.38072 3.42304 3.65147 3.69810 3.80236 3.95944 4.08142 4.10825 4.20571 4.23001 4.26417 4.29809 4.38674 4.43681 4.50488 4.60222 4.66587 4.74412 4.76743 4.82725 4.84211 4.87012 4.98352 5.01612 5.10273 5.17021 5.29848 5.34168 5.39486 5.65544 6.18232 6.65058 6.76190 6.95382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.456 3.544 4 O -0.544 6.544 5 C -0.109 4.109 6 C -0.093 4.093 7 C -0.100 4.100 8 H 0.100 0.900 9 C -0.133 4.133 10 C 0.116 3.884 11 H 0.095 0.905 12 N -0.671 5.671 13 C 0.308 3.692 14 N -0.584 5.584 15 C 0.071 3.929 16 C -0.035 4.035 17 O -0.552 6.552 18 Si 0.811 3.189 19 C -0.244 4.244 20 C -0.052 4.052 21 S 0.126 5.874 22 C -0.145 4.145 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.407 0.593 35 H -0.302 1.302 36 H -0.324 1.324 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -2.985 1.489 3.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.147 4.147 6 C -0.131 4.131 7 C -0.118 4.118 8 H 0.119 0.881 9 C -0.171 4.171 10 C 0.011 3.989 11 H 0.113 0.887 12 N -0.311 5.311 13 C -0.063 4.063 14 N -0.313 5.313 15 C -0.058 4.058 16 C -0.147 4.147 17 O -0.362 6.362 18 Si 0.720 3.280 19 C -0.366 4.366 20 C -0.111 4.111 21 S 0.375 5.625 22 C -0.184 4.184 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.145 0.855 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.118 0.882 34 H 0.260 0.740 35 H -0.231 1.231 36 H -0.253 1.253 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.044 -1.917 1.265 2.297 hybrid contribution -0.330 -0.289 -0.460 0.636 sum -0.287 -2.206 0.806 2.366 Atomic orbital electron populations 1.23492 0.75199 1.05506 1.02354 1.86517 1.24728 1.33542 1.83731 1.24572 0.93565 0.80824 0.70965 1.90674 1.68371 1.37417 1.46973 1.21552 0.84918 1.00557 1.07635 1.21348 0.94617 0.93751 1.03360 1.22543 0.94179 0.97422 0.97705 0.88135 1.23372 0.96466 0.97927 0.99319 1.22133 0.82854 0.96706 0.97254 0.88699 1.43749 1.02068 1.63672 1.21610 1.23500 0.90093 0.97322 0.95379 1.65765 0.98392 1.30670 1.36465 1.19421 0.93956 1.01488 0.90898 1.23976 0.84190 0.95996 1.10515 1.86387 1.19230 1.55033 1.75569 0.95360 0.85064 0.75964 0.71646 1.25557 0.97167 1.11130 1.02777 1.20108 0.95008 1.02776 0.93214 1.83753 1.05309 1.58763 1.14683 1.23628 0.97678 0.99466 0.97647 0.92103 0.92171 0.85456 0.85838 0.85834 0.91599 0.91166 0.90475 0.87165 0.74804 0.88242 0.74018 1.23088 1.25334 0.91754 0.90135 0.89457 0.87480 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.03 10.57 -51.38 -0.54 -1.58 16 3 C 0.46 1.49 7.96 71.24 0.57 2.06 16 4 O -0.54 -5.42 15.73 21.97 0.35 -5.07 16 5 C -0.11 0.49 5.80 29.85 0.17 0.66 16 6 C -0.09 0.37 4.34 30.59 0.13 0.51 16 7 C -0.10 0.63 3.53 -10.26 -0.04 0.59 16 8 H 0.10 -0.72 8.13 -2.39 -0.02 -0.73 16 9 C -0.13 0.71 7.39 31.12 0.23 0.94 16 10 C 0.12 -0.35 4.31 45.52 0.20 -0.15 16 11 H 0.10 -0.25 7.06 -2.39 -0.02 -0.27 16 12 N -0.67 -1.15 5.42 -327.90 -1.78 -2.93 16 13 C 0.31 2.30 8.24 179.32 1.48 3.77 16 14 N -0.58 -6.88 8.96 -189.87 -1.70 -8.58 16 15 C 0.07 0.67 5.95 41.40 0.25 0.92 16 16 C -0.03 -0.09 2.93 71.23 0.21 0.12 16 17 O -0.55 0.56 9.80 -148.98 -1.46 -0.90 16 18 Si 0.81 2.80 32.09 68.60 2.20 5.00 16 19 C -0.24 -1.80 6.50 24.57 0.16 -1.64 16 20 C -0.05 -0.14 8.91 71.24 0.63 0.50 16 21 S 0.13 0.61 21.69 -56.49 -1.23 -0.61 16 22 C -0.15 0.79 7.43 31.12 0.23 1.02 16 23 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 24 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 25 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.07 -0.10 8.10 -2.39 -0.02 -0.11 16 29 H 0.07 -0.16 7.80 -2.39 -0.02 -0.18 16 30 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.11 -0.72 8.10 -2.38 -0.02 -0.74 16 32 H 0.41 0.29 8.83 -92.71 -0.82 -0.53 16 33 H 0.10 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.41 -4.88 8.74 -74.06 -0.65 -5.52 16 35 H -0.30 -3.48 7.11 99.48 0.71 -2.77 16 36 H -0.32 -4.33 7.11 99.48 0.71 -3.63 16 37 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.09 0.28 6.73 -2.39 -0.02 0.26 16 40 H 0.11 -0.74 7.90 -2.39 -0.02 -0.76 16 41 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 Total: 0.00 -23.59 354.91 0.88 -22.71 By element: Atomic # 1 Polarization: -18.12 SS G_CDS: -0.37 Total: -18.50 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.42 Total: 10.47 kcal Atomic # 7 Polarization: -8.04 SS G_CDS: -3.48 Total: -11.52 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -1.66 Total: -7.56 kcal Atomic # 14 Polarization: 2.80 SS G_CDS: 2.20 Total: 5.00 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -1.23 Total: -0.61 kcal Total: -23.59 0.88 -22.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17523012_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.603 kcal (2) G-P(sol) polarization free energy of solvation -23.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds