Wall clock time and date at job start Mon Mar 8 2021 07:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 117.00127 * 2 1 4 4 O 1.20821 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00072 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47319 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47265 * 179.97438 * 6 5 3 8 8 H 1.09002 * 112.84949 * 45.33448 * 7 6 5 9 9 C 1.53781 * 113.61707 * 176.53008 * 7 6 5 10 10 C 1.53777 * 87.08336 * 140.06298 * 9 7 6 11 11 H 1.08996 * 113.61474 * 220.01758 * 10 9 7 12 12 N 1.46500 * 113.61088 * 89.11940 * 10 9 7 13 13 C 1.39146 * 120.00078 * 155.00188 * 12 10 9 14 14 N 1.32336 * 119.71370 * 359.72293 * 13 12 10 15 15 C 1.32011 * 121.64069 * 179.75699 * 14 13 12 16 16 C 1.37984 * 120.90491 * 0.52001 * 15 14 13 17 17 C 1.50696 * 120.33126 * 179.72289 * 16 15 14 18 18 O 1.42896 * 109.47274 * 120.02305 * 17 16 15 19 19 Si 1.86298 * 109.47011 * 0.02562 * 17 16 15 20 20 C 1.38907 * 119.34197 * 359.75061 * 16 15 14 21 21 C 1.38441 * 118.48771 * 359.97438 * 20 16 15 22 22 F 1.35103 * 120.47188 * 179.97438 * 21 20 16 23 23 C 1.53775 * 87.07992 * 334.56762 * 10 9 7 24 24 H 1.08995 * 109.46862 * 300.00145 * 1 2 3 25 25 H 1.08995 * 109.46680 * 60.00091 * 1 2 3 26 26 H 1.08997 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47286 * 59.99313 * 5 3 2 28 28 H 1.09005 * 109.46877 * 300.00112 * 5 3 2 29 29 H 1.09001 * 109.46833 * 59.99982 * 6 5 3 30 30 H 1.08992 * 109.47090 * 300.00055 * 6 5 3 31 31 H 1.08997 * 113.61673 * 254.61847 * 9 7 6 32 32 H 1.09009 * 113.61202 * 25.43077 * 9 7 6 33 33 H 0.96999 * 119.99703 * 334.99353 * 12 10 9 34 34 H 1.08001 * 119.54738 * 180.26892 * 15 14 13 35 35 H 1.08996 * 109.47012 * 240.02562 * 17 16 15 36 36 H 0.96704 * 114.00192 * 300.00398 * 18 17 16 37 37 H 1.48509 * 110.00059 * 58.68223 * 19 17 16 38 38 H 1.48503 * 110.00147 * 179.97438 * 19 17 16 39 39 H 1.08007 * 120.75620 * 179.97438 * 20 16 15 40 40 H 1.08993 * 113.61636 * 270.87622 * 23 10 9 41 41 H 1.09008 * 113.61006 * 139.97865 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0003 2.7419 -0.0011 7 6 5.5282 2.8220 -0.0011 8 1 5.9878 2.1387 -0.7152 9 6 6.0698 4.2587 -0.0868 10 6 7.1412 3.8318 0.9304 11 1 7.3549 4.5900 1.6836 12 7 8.3517 3.2845 0.3128 13 6 9.5649 3.3390 0.9920 14 7 9.6198 3.8914 2.1933 15 6 10.7493 3.9592 2.8733 16 6 11.9241 3.4621 2.3474 17 6 13.2073 3.5518 3.1324 18 8 13.7191 2.2373 3.3606 19 14 12.8783 4.3825 4.7672 20 6 11.9124 2.8786 1.0869 21 6 10.7125 2.8163 0.3992 22 9 10.6553 2.2578 -0.8297 23 6 6.1503 2.7552 1.4037 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9558 0.7808 -0.8907 28 1 3.9564 0.7805 0.8892 29 1 3.6108 3.2363 0.8889 30 1 3.6102 3.2358 -0.8910 31 1 6.4746 4.5150 -1.0658 32 1 5.3780 5.0097 0.2949 33 1 8.3074 2.8840 -0.5696 34 1 10.7546 4.4135 3.8531 35 1 13.9375 4.1335 2.5698 36 1 13.1204 1.6628 3.8571 37 1 11.8606 3.6162 5.5306 38 1 14.1359 4.4766 5.5513 39 1 12.8188 2.4825 0.6531 40 1 5.4813 3.0949 2.1942 41 1 6.6204 1.7976 1.6279 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17523012_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:59:18 Heat of formation + Delta-G solvation = -93.379426 kcal Electronic energy + Delta-G solvation = -24996.720903 eV Core-core repulsion = 20986.917158 eV Total energy + Delta-G solvation = -4009.803745 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.94997 -41.63083 -41.44248 -40.30938 -38.07430 -37.65790 -35.79327 -33.74233 -33.11764 -31.11794 -29.09478 -27.12437 -26.67485 -26.17482 -25.01649 -23.16353 -22.91298 -21.57523 -20.33863 -19.40989 -18.70311 -18.44335 -18.19845 -17.70885 -17.56264 -17.52261 -17.02022 -16.43022 -16.18895 -16.00265 -15.64997 -15.50688 -15.39817 -14.78839 -14.71653 -14.42737 -14.30354 -14.08526 -13.95453 -13.46261 -13.44639 -13.35628 -13.05282 -12.70646 -12.63997 -12.20699 -12.07430 -11.86791 -11.83007 -11.67713 -11.47553 -11.07720 -11.01767 -10.72424 -10.64006 -10.51904 -8.75593 -4.88015 -0.07714 0.11011 1.13187 1.32843 1.64142 1.76182 1.96355 2.00761 2.53889 3.02680 3.27296 3.43751 3.54535 3.58089 3.61345 3.72697 3.86325 3.88597 3.92022 4.00600 4.20040 4.23591 4.27687 4.31368 4.44870 4.53306 4.56232 4.60565 4.68314 4.74557 4.79925 4.85367 4.90766 4.93675 4.99249 5.08942 5.14762 5.26555 5.33517 5.40784 5.53238 6.03479 6.20964 6.51003 6.67258 6.97261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.455 3.545 4 O -0.544 6.544 5 C -0.109 4.109 6 C -0.093 4.093 7 C -0.101 4.101 8 H 0.101 0.899 9 C -0.138 4.138 10 C 0.129 3.871 11 H 0.098 0.902 12 N -0.695 5.695 13 C 0.385 3.615 14 N -0.525 5.525 15 C 0.148 3.852 16 C -0.204 4.204 17 C -0.067 4.067 18 O -0.549 6.549 19 Si 0.765 3.235 20 C -0.040 4.040 21 C -0.037 4.037 22 F -0.141 7.141 23 C -0.145 4.145 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.416 0.584 34 H 0.183 0.817 35 H 0.129 0.871 36 H 0.387 0.613 37 H -0.277 1.277 38 H -0.301 1.301 39 H 0.154 0.846 40 H 0.095 0.905 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.356 0.165 0.361 0.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.301 3.699 4 O -0.434 6.434 5 C -0.146 4.146 6 C -0.131 4.131 7 C -0.119 4.119 8 H 0.119 0.881 9 C -0.176 4.176 10 C 0.023 3.977 11 H 0.117 0.883 12 N -0.328 5.328 13 C 0.146 3.854 14 N -0.242 5.242 15 C -0.009 4.009 16 C -0.209 4.209 17 C -0.177 4.177 18 O -0.357 6.357 19 Si 0.669 3.331 20 C -0.066 4.066 21 C -0.064 4.064 22 F -0.120 7.120 23 C -0.184 4.184 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.254 0.746 34 H 0.199 0.801 35 H 0.147 0.853 36 H 0.236 0.764 37 H -0.203 1.203 38 H -0.230 1.230 39 H 0.172 0.828 40 H 0.114 0.886 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.019 1.003 1.273 1.914 hybrid contribution 0.312 -1.846 -1.007 2.126 sum -0.707 -0.844 0.266 1.132 Atomic orbital electron populations 1.23491 0.75220 1.05496 1.02349 1.86516 1.24715 1.33548 1.83748 1.24587 0.93581 0.80817 0.70955 1.90671 1.68375 1.37426 1.46967 1.21548 0.84868 1.00592 1.07585 1.21347 0.94976 0.93651 1.03120 1.22561 0.93848 0.97635 0.97893 0.88126 1.23374 0.97150 0.97313 0.99762 1.21822 0.82895 0.96505 0.96446 0.88350 1.44290 1.04005 1.64345 1.20125 1.18550 0.85948 0.91294 0.89591 1.67358 1.29772 1.20904 1.06213 1.22701 0.86076 0.93322 0.98845 1.20906 0.97606 1.05985 0.96394 1.25032 0.94813 0.88799 1.09023 1.86583 1.47848 1.23579 1.77675 0.94177 0.77818 0.87873 0.73197 1.21430 0.96730 0.94876 0.93612 1.18124 0.95183 1.08669 0.84411 1.91468 1.96992 1.83649 1.39858 1.23533 0.98117 0.99553 0.97216 0.92156 0.92137 0.85450 0.85711 0.86006 0.91570 0.91653 0.90578 0.88054 0.74605 0.80075 0.85296 0.76412 1.20331 1.22951 0.82806 0.88643 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.37 -1.11 10.57 -51.39 -0.54 -1.66 16 3 C 0.46 1.66 7.96 71.24 0.57 2.23 16 4 O -0.54 -5.65 15.73 21.98 0.35 -5.31 16 5 C -0.11 0.43 5.81 29.85 0.17 0.60 16 6 C -0.09 0.30 4.33 30.59 0.13 0.43 16 7 C -0.10 0.58 3.52 -10.27 -0.04 0.54 16 8 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 9 C -0.14 0.66 7.39 31.12 0.23 0.89 16 10 C 0.13 -0.31 4.35 45.51 0.20 -0.12 16 11 H 0.10 -0.01 7.40 -2.39 -0.02 -0.03 16 12 N -0.70 0.55 5.41 -321.81 -1.74 -1.19 16 13 C 0.38 0.99 7.49 133.08 1.00 1.99 16 14 N -0.53 -1.31 9.13 -193.03 -1.76 -3.07 16 15 C 0.15 -0.17 9.84 84.61 0.83 0.66 16 16 C -0.20 0.30 5.40 -19.77 -0.11 0.20 16 17 C -0.07 0.21 2.84 71.23 0.20 0.41 16 18 O -0.55 -0.14 12.78 -148.98 -1.90 -2.04 16 19 Si 0.76 -3.44 29.82 68.60 2.05 -1.40 16 20 C -0.04 -0.03 9.75 22.48 0.22 0.19 16 21 C -0.04 -0.11 7.35 22.58 0.17 0.05 16 22 F -0.14 -0.60 16.65 44.97 0.75 0.14 16 23 C -0.15 0.59 7.43 31.12 0.23 0.82 16 24 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 25 H 0.06 0.00 8.13 -2.39 -0.02 -0.01 16 26 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 27 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.12 -0.83 8.14 -2.38 -0.02 -0.85 16 29 H 0.07 -0.06 7.84 -2.39 -0.02 -0.08 16 30 H 0.06 -0.05 8.10 -2.39 -0.02 -0.07 16 31 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.10 -0.51 8.10 -2.38 -0.02 -0.53 16 33 H 0.42 -1.17 8.17 -92.71 -0.76 -1.93 16 34 H 0.18 -1.11 4.88 -2.91 -0.01 -1.12 16 35 H 0.13 -0.64 7.96 -2.39 -0.02 -0.66 16 36 H 0.39 -1.99 8.70 -74.05 -0.64 -2.63 16 37 H -0.28 0.27 7.11 99.48 0.71 0.98 16 38 H -0.30 -1.10 7.11 99.48 0.71 -0.39 16 39 H 0.15 -0.11 8.06 -2.91 -0.02 -0.13 16 40 H 0.10 -0.41 7.92 -2.39 -0.02 -0.43 16 41 H 0.06 -0.16 8.14 -2.38 -0.02 -0.18 16 Total: 0.00 -17.31 350.54 1.90 -15.41 By element: Atomic # 1 Polarization: -10.67 SS G_CDS: -0.29 Total: -10.96 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.00 Total: 10.07 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -3.50 Total: -4.26 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -2.10 Total: -9.01 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.75 Total: 0.14 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.05 Total: -1.40 kcal Total: -17.31 1.90 -15.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17523012_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.970 kcal (2) G-P(sol) polarization free energy of solvation -17.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds