Wall clock time and date at job start Mon Mar 8 2021 10:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86304 * 109.46867 * 2 1 4 4 C 1.50691 * 109.47319 * 240.00011 * 2 1 3 5 5 C 1.33326 * 125.95354 * 299.99522 * 4 2 1 6 6 N 1.32117 * 114.58375 * 180.02562 * 5 4 2 7 7 C 1.29686 * 116.86341 * 359.97438 * 6 5 4 8 8 N 1.38611 * 124.94846 * 179.97438 * 7 6 5 9 9 C 1.46510 * 119.99978 * 0.02562 * 8 7 6 10 10 H 1.09001 * 112.84651 * 26.65644 * 9 8 7 11 11 C 1.53785 * 113.61231 * 157.84927 * 9 8 7 12 12 C 1.53783 * 87.07753 * 89.20367 * 11 9 8 13 13 H 1.08998 * 113.60951 * 140.06810 * 12 11 9 14 14 N 1.46504 * 113.61157 * 270.88114 * 12 11 9 15 15 C 1.34943 * 126.03599 * 154.76554 * 14 12 11 16 16 C 1.35315 * 107.74928 * 180.24673 * 15 14 12 17 17 C 1.39869 * 107.91660 * 359.63789 * 16 15 14 18 18 N 1.30841 * 108.20276 * 0.36571 * 17 16 15 19 19 C 1.53773 * 87.08410 * 25.43080 * 12 11 9 20 20 S 1.70962 * 110.10172 * 0.24433 * 7 6 5 21 21 H 0.96703 * 114.00010 * 60.00311 * 1 2 3 22 22 H 1.09002 * 109.46951 * 119.99412 * 2 1 3 23 23 H 1.48499 * 109.99925 * 298.68067 * 3 2 1 24 24 H 1.48501 * 109.99869 * 59.99691 * 3 2 1 25 25 H 1.08002 * 122.70913 * 359.97438 * 5 4 2 26 26 H 0.97000 * 120.00080 * 180.02562 * 8 7 6 27 27 H 1.08997 * 113.61396 * 334.65258 * 11 9 8 28 28 H 1.09001 * 113.68789 * 203.76171 * 11 9 8 29 29 H 1.08005 * 126.12857 * 359.97438 * 15 14 12 30 30 H 1.07998 * 126.04667 * 179.76797 * 16 15 14 31 31 H 1.08008 * 125.90166 * 180.14484 * 17 16 15 32 32 H 1.09003 * 113.61477 * 89.11590 * 19 12 11 33 33 H 1.08998 * 113.61791 * 220.02147 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6836 -1.9788 -1.5579 6 7 2.2386 -2.3725 -2.6904 7 6 2.9431 -1.4943 -3.3341 8 7 3.5972 -1.7259 -4.5340 9 6 3.5200 -3.0446 -5.1677 10 1 2.6134 -3.5889 -4.9032 11 6 3.8048 -3.0195 -6.6787 12 6 5.2873 -3.2207 -6.3229 13 1 5.8078 -3.9059 -6.9920 14 7 6.0158 -1.9670 -6.1133 15 6 7.1245 -1.8094 -5.3604 16 6 7.4824 -0.5058 -5.4210 17 6 6.5657 0.1542 -6.2457 18 7 5.6843 -0.7201 -6.6589 19 6 4.8041 -3.8776 -5.0192 20 16 2.9536 -0.0114 -2.4833 21 1 -0.3933 0.4417 -0.7651 22 1 1.7923 -0.5138 0.8901 23 1 1.5878 2.4586 -1.2242 24 1 1.5613 2.4679 1.2085 25 1 1.0788 -2.6320 -0.9464 26 1 4.1061 -1.0150 -4.9541 27 1 3.5946 -2.0578 -7.1467 28 1 3.3681 -3.8584 -7.2207 29 1 7.6324 -2.5839 -4.8049 30 1 8.3278 -0.0551 -4.9225 31 1 6.5804 1.2050 -6.4953 32 1 4.6403 -4.9517 -5.1062 33 1 5.4006 -3.6087 -4.1475 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567480_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:08:24 Heat of formation + Delta-G solvation = 147.020618 kcal Electronic energy + Delta-G solvation = -19374.769241 eV Core-core repulsion = 16339.594147 eV Total energy + Delta-G solvation = -3035.175095 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44084 -40.86966 -39.79704 -38.01357 -35.33769 -32.31798 -31.19261 -30.88698 -27.07107 -26.80471 -25.97668 -24.48443 -22.70602 -21.78604 -21.04107 -20.29341 -19.63249 -18.28077 -18.08120 -17.39915 -16.60298 -16.47224 -16.33818 -15.90018 -15.59092 -15.27507 -15.10072 -14.89012 -14.55421 -13.97671 -13.79729 -13.70761 -13.20491 -13.04762 -12.88047 -12.49301 -12.15408 -12.06869 -11.81358 -11.53458 -11.18849 -10.97846 -10.36540 -10.33818 -10.28316 -9.51685 -8.80800 -5.06607 -0.13180 -0.04416 0.62338 0.94411 1.22377 1.50698 1.52546 1.85103 1.90011 1.90567 2.09172 3.06885 3.23545 3.35286 3.57886 3.62225 3.87149 3.95524 4.03232 4.14995 4.49506 4.54751 4.60203 4.63846 4.65428 4.68091 4.77584 4.84748 4.90603 4.92482 5.12380 5.16184 5.72452 5.82346 6.00822 6.14170 6.40342 6.74280 6.90745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.020 4.020 3 Si 0.719 3.281 4 C -0.302 4.302 5 C 0.104 3.896 6 N -0.570 5.570 7 C 0.314 3.686 8 N -0.673 5.673 9 C 0.125 3.875 10 H 0.101 0.899 11 C -0.137 4.137 12 C 0.122 3.878 13 H 0.123 0.877 14 N -0.364 5.364 15 C 0.056 3.944 16 C -0.284 4.284 17 C 0.036 3.964 18 N -0.335 5.335 19 C -0.144 4.144 20 S 0.100 5.900 21 H 0.386 0.614 22 H 0.139 0.861 23 H -0.271 1.271 24 H -0.270 1.270 25 H 0.184 0.816 26 H 0.416 0.584 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.194 0.806 30 H 0.162 0.838 31 H 0.200 0.800 32 H 0.138 0.862 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 -1.828 -0.815 4.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.132 4.132 3 Si 0.622 3.378 4 C -0.425 4.425 5 C -0.046 4.046 6 N -0.296 5.296 7 C -0.056 4.056 8 N -0.314 5.314 9 C 0.017 3.983 10 H 0.119 0.881 11 C -0.175 4.175 12 C 0.021 3.979 13 H 0.141 0.859 14 N -0.146 5.146 15 C -0.090 4.090 16 C -0.313 4.313 17 C -0.149 4.149 18 N -0.157 5.157 19 C -0.184 4.184 20 S 0.349 5.651 21 H 0.235 0.765 22 H 0.156 0.844 23 H -0.197 1.197 24 H -0.195 1.195 25 H 0.201 0.799 26 H 0.256 0.744 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.211 0.789 30 H 0.180 0.820 31 H 0.217 0.783 32 H 0.156 0.844 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.529 -1.328 -1.474 4.048 hybrid contribution -0.556 -0.168 0.203 0.615 sum 2.973 -1.496 -1.271 3.562 Atomic orbital electron populations 1.86586 1.18067 1.80228 1.49967 1.24242 0.83046 1.10152 0.95785 0.94403 0.90699 0.73533 0.79188 1.25630 1.12896 0.99073 1.04891 1.21510 0.97620 0.93654 0.91849 1.66496 1.17849 1.34219 1.11027 1.23937 0.95089 0.93909 0.92679 1.44030 1.53751 1.14580 1.19004 1.22073 0.99821 0.83142 0.93223 0.88087 1.23583 0.93103 1.05390 0.95460 1.22457 0.93711 0.81866 0.99907 0.85908 1.48630 1.21502 1.07188 1.37307 1.22947 0.89940 0.99521 0.96596 1.21840 1.06271 0.93584 1.09575 1.24381 0.93213 1.00580 0.96748 1.77277 1.25489 0.89874 1.23053 1.23934 0.96386 1.02005 0.96052 1.83977 1.50872 1.13252 1.16958 0.76487 0.84399 1.19670 1.19517 0.79940 0.74407 0.90538 0.84147 0.78943 0.82045 0.78316 0.84358 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.60 12.87 -148.98 -1.92 -3.52 16 2 C -0.02 -0.01 2.99 71.23 0.21 0.20 16 3 Si 0.72 -0.03 31.05 68.60 2.13 2.10 16 4 C -0.30 -0.86 5.74 24.57 0.14 -0.72 16 5 C 0.10 0.53 11.22 83.54 0.94 1.47 16 6 N -0.57 -4.29 9.87 -202.03 -1.99 -6.28 16 7 C 0.31 1.79 8.09 179.32 1.45 3.24 16 8 N -0.67 -2.14 5.27 -327.87 -1.73 -3.86 16 9 C 0.13 -0.09 4.41 45.52 0.20 0.11 16 10 H 0.10 0.13 7.73 -2.39 -0.02 0.11 16 11 C -0.14 0.50 7.44 31.12 0.23 0.73 16 12 C 0.12 -0.51 4.90 45.52 0.22 -0.29 16 13 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 14 N -0.36 -0.06 2.79 -324.99 -0.91 -0.97 16 15 C 0.06 -0.08 11.00 83.54 0.92 0.83 16 16 C -0.28 0.20 10.80 21.99 0.24 0.44 16 17 C 0.04 0.04 12.03 85.24 1.02 1.06 16 18 N -0.33 -1.31 10.34 -57.02 -0.59 -1.90 16 19 C -0.14 0.74 7.54 31.12 0.23 0.97 16 20 S 0.10 0.30 20.57 -56.49 -1.16 -0.87 16 21 H 0.39 -0.70 8.70 -74.06 -0.64 -1.35 16 22 H 0.14 -0.30 7.96 -2.39 -0.02 -0.31 16 23 H -0.27 -1.20 7.11 99.48 0.71 -0.49 16 24 H -0.27 -1.47 7.11 99.48 0.71 -0.76 16 25 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 26 H 0.42 1.57 6.55 -92.71 -0.61 0.97 16 27 H 0.08 0.08 7.51 -2.39 -0.02 0.06 16 28 H 0.14 -1.23 8.14 -2.39 -0.02 -1.25 16 29 H 0.19 -1.35 8.06 -2.91 -0.02 -1.38 16 30 H 0.16 -0.68 8.06 -2.91 -0.02 -0.70 16 31 H 0.20 -0.76 8.06 -2.91 -0.02 -0.78 16 32 H 0.14 -1.35 8.14 -2.39 -0.02 -1.37 16 33 H 0.07 -0.18 7.81 -2.39 -0.02 -0.20 16 Total: 0.00 -14.78 296.05 -0.42 -15.19 By element: Atomic # 1 Polarization: -7.89 SS G_CDS: -0.06 Total: -7.96 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.81 Total: 8.06 kcal Atomic # 7 Polarization: -7.79 SS G_CDS: -5.22 Total: -13.01 kcal Atomic # 8 Polarization: -1.60 SS G_CDS: -1.92 Total: -3.52 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: 2.13 Total: 2.10 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.16 Total: -0.87 kcal Total: -14.78 -0.42 -15.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567480_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.214 kcal (2) G-P(sol) polarization free energy of solvation -14.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds