Wall clock time and date at job start Mon Mar 8 2021 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86306 * 109.46700 * 2 1 4 4 C 1.50695 * 109.47060 * 119.99973 * 2 1 3 5 5 C 1.38026 * 120.33417 * 244.97628 * 4 2 1 6 6 N 1.31972 * 120.85087 * 179.75170 * 5 4 2 7 7 C 1.32398 * 121.62468 * 0.56257 * 6 5 4 8 8 N 1.39006 * 119.70003 * 179.71562 * 7 6 5 9 9 C 1.46501 * 119.99543 * 179.72916 * 8 7 6 10 10 C 1.52995 * 109.47334 * 179.97438 * 9 8 7 11 11 H 1.08999 * 112.85041 * 43.80092 * 10 9 8 12 12 C 1.53783 * 113.61701 * 175.00112 * 10 9 8 13 13 C 1.53781 * 87.08042 * 139.98175 * 12 10 9 14 14 H 1.08999 * 113.61671 * 89.20297 * 13 12 10 15 15 N 1.46502 * 113.61144 * 220.02103 * 13 12 10 16 16 C 1.34942 * 126.03991 * 83.49535 * 15 13 12 17 17 C 1.35316 * 107.74613 * 179.75096 * 16 15 13 18 18 C 1.39870 * 107.92161 * 0.39436 * 17 16 15 19 19 N 1.30836 * 108.20019 * 359.59732 * 18 17 16 20 20 C 1.53777 * 87.17293 * 334.60883 * 13 12 10 21 21 C 1.39127 * 120.58769 * 359.44067 * 7 6 5 22 22 C 1.38298 * 119.09835 * 0.27108 * 21 7 6 23 23 H 0.96694 * 113.99866 * 299.99415 * 1 2 3 24 24 H 1.09001 * 109.46675 * 240.00470 * 2 1 3 25 25 H 1.48495 * 109.99658 * 178.68228 * 3 2 1 26 26 H 1.48494 * 110.00079 * 299.99887 * 3 2 1 27 27 H 1.07999 * 119.56870 * 0.02739 * 5 4 2 28 28 H 0.96992 * 120.00350 * 359.72584 * 8 7 6 29 29 H 1.09006 * 109.47006 * 59.99463 * 9 8 7 30 30 H 1.08997 * 109.46904 * 300.00074 * 9 8 7 31 31 H 1.08999 * 113.61115 * 25.42786 * 12 10 9 32 32 H 1.09002 * 113.60805 * 254.52921 * 12 10 9 33 33 H 1.08002 * 126.12737 * 359.97438 * 16 15 13 34 34 H 1.07998 * 126.04386 * 180.27449 * 17 16 15 35 35 H 1.08002 * 125.90382 * 179.86983 * 18 17 16 36 36 H 1.09003 * 113.61582 * 139.94186 * 20 13 12 37 37 H 1.08999 * 113.61752 * 270.84328 * 20 13 12 38 38 H 1.08008 * 120.45226 * 180.25366 * 21 7 6 39 39 H 1.08009 * 120.74746 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6388 -0.0202 2.1939 6 7 3.0793 -0.6310 3.2776 7 6 2.8721 -1.9231 3.4789 8 7 3.3591 -2.5272 4.6323 9 6 3.1284 -3.9552 4.8644 10 6 3.7632 -4.3647 6.1949 11 1 3.5724 -3.6476 6.9933 12 6 3.4736 -5.8216 6.5931 13 6 4.9311 -5.8960 7.0780 14 1 5.0607 -5.5992 8.1187 15 7 5.5904 -7.1656 6.7621 16 6 6.1799 -7.4842 5.5908 17 6 6.6726 -8.7393 5.7050 18 6 6.3661 -9.2070 6.9870 19 7 5.7204 -8.2632 7.6228 20 6 5.2425 -4.7737 6.0739 21 6 2.1665 -2.6802 2.5492 22 6 1.6877 -2.0663 1.4062 23 1 -0.3933 0.4416 0.7650 24 1 1.7923 -0.5138 -0.8901 25 1 3.5345 1.7704 0.0321 26 1 1.5615 2.4679 -1.2084 27 1 2.8306 1.0344 2.0611 28 1 3.8515 -2.0034 5.2833 29 1 3.5769 -4.5319 4.0554 30 1 2.0564 -4.1493 4.8979 31 1 3.2619 -6.4722 5.7446 32 1 2.7413 -5.9177 7.3947 33 1 6.2494 -6.8497 4.7196 34 1 7.2064 -9.2844 4.9406 35 1 6.6224 -10.1777 7.3851 36 1 5.9361 -4.0252 6.4569 37 1 5.5152 -5.1374 5.0832 38 1 1.9953 -3.7333 2.7176 39 1 1.1362 -2.6286 0.6670 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567482_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:49 Heat of formation + Delta-G solvation = 124.454295 kcal Electronic energy + Delta-G solvation = -21455.867651 eV Core-core repulsion = 18175.024142 eV Total energy + Delta-G solvation = -3280.843509 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.32695 -41.42427 -40.19907 -38.06563 -36.51145 -33.53509 -32.85847 -31.54283 -30.94638 -28.75563 -27.17024 -26.10153 -25.04293 -24.28157 -22.50399 -22.18616 -21.64844 -20.42531 -18.85559 -18.60970 -18.21571 -17.49835 -17.09868 -16.51744 -16.14700 -15.98066 -15.79823 -15.66168 -15.36066 -15.21774 -14.72580 -14.42667 -14.24192 -14.07109 -14.02030 -13.55822 -13.46705 -13.40516 -13.09448 -12.52211 -12.37539 -12.08582 -11.97565 -11.88447 -11.53265 -11.22914 -10.75296 -10.43240 -10.40731 -10.33384 -9.51359 -8.77640 -5.04623 0.21326 0.38940 0.94999 1.29603 1.50477 1.62632 1.96286 1.96606 1.97877 2.82748 2.95725 3.05708 3.31720 3.38199 3.47668 3.57254 3.71564 3.75549 3.89014 3.94757 3.96659 4.06121 4.07802 4.24015 4.30430 4.34448 4.42703 4.45555 4.50007 4.55516 4.62756 4.70232 4.74219 4.84537 4.96807 5.00871 5.11849 5.25836 5.45622 5.74776 5.91303 6.07365 6.44604 6.57847 6.80199 7.11009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.052 4.052 3 Si 0.680 3.320 4 C -0.235 4.235 5 C 0.158 3.842 6 N -0.539 5.539 7 C 0.407 3.593 8 N -0.723 5.723 9 C 0.140 3.860 10 C -0.118 4.118 11 H 0.109 0.891 12 C -0.136 4.136 13 C 0.137 3.863 14 H 0.124 0.876 15 N -0.363 5.363 16 C 0.052 3.948 17 C -0.273 4.273 18 C 0.045 3.955 19 N -0.297 5.297 20 C -0.140 4.140 21 C -0.239 4.239 22 C -0.005 4.005 23 H 0.378 0.622 24 H 0.112 0.888 25 H -0.256 1.256 26 H -0.253 1.253 27 H 0.155 0.845 28 H 0.407 0.593 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.171 0.829 34 H 0.148 0.852 35 H 0.183 0.817 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 0.615 0.683 1.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.164 4.164 3 Si 0.582 3.418 4 C -0.241 4.241 5 C 0.000 4.000 6 N -0.256 5.256 7 C 0.171 3.829 8 N -0.356 5.356 9 C 0.016 3.984 10 C -0.137 4.137 11 H 0.127 0.873 12 C -0.175 4.175 13 C 0.035 3.965 14 H 0.142 0.858 15 N -0.145 5.145 16 C -0.094 4.094 17 C -0.303 4.303 18 C -0.141 4.141 19 N -0.118 5.118 20 C -0.179 4.179 21 C -0.264 4.264 22 C -0.031 4.031 23 H 0.226 0.774 24 H 0.129 0.871 25 H -0.181 1.181 26 H -0.178 1.178 27 H 0.172 0.828 28 H 0.242 0.758 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.188 0.812 34 H 0.166 0.834 35 H 0.200 0.800 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.314 1.606 1.489 2.213 hybrid contribution 0.319 -1.221 -1.311 1.820 sum 0.005 0.385 0.179 0.424 Atomic orbital electron populations 1.86497 1.17325 1.81690 1.49253 1.24787 0.85024 1.09691 0.96926 0.94906 0.81175 0.78105 0.87596 1.20996 1.06877 0.96084 1.00105 1.22190 0.91433 0.98734 0.87630 1.67128 1.25821 1.09025 1.23640 1.18364 0.89316 0.88451 0.86735 1.44457 1.60883 1.09178 1.21096 1.21365 1.00576 0.80453 0.96026 1.22607 0.95581 0.97518 0.97993 0.87323 1.23457 0.96271 0.95287 1.02448 1.22854 0.92841 0.79528 1.01260 0.85810 1.48720 1.43769 1.12374 1.09675 1.22455 0.97904 0.97668 0.91389 1.21568 1.12356 0.96682 0.99661 1.23957 0.97454 0.99048 0.93689 1.77393 1.22446 0.94863 1.17080 1.23599 0.97313 0.97011 0.99932 1.21445 1.06711 1.01339 0.96876 1.21201 0.93059 0.93432 0.95381 0.77430 0.87097 1.18077 1.17795 0.82805 0.75754 0.91518 0.91168 0.88808 0.89478 0.81213 0.83447 0.79961 0.89413 0.88599 0.84999 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.02 12.84 -35.23 -0.45 -0.48 16 2 C -0.05 0.02 2.82 36.00 0.10 0.12 16 3 Si 0.68 -0.78 29.83 -169.99 -5.07 -5.85 16 4 C -0.24 -0.06 5.36 -104.46 -0.56 -0.61 16 5 C 0.16 0.11 9.84 -17.57 -0.17 -0.07 16 6 N -0.54 -1.13 10.39 -12.44 -0.13 -1.26 16 7 C 0.41 0.35 7.65 -155.02 -1.19 -0.83 16 8 N -0.72 1.13 5.73 -60.42 -0.35 0.78 16 9 C 0.14 -0.50 4.73 -4.04 -0.02 -0.52 16 10 C -0.12 0.52 3.75 -89.72 -0.34 0.18 16 11 H 0.11 -0.53 8.14 -51.93 -0.42 -0.96 16 12 C -0.14 0.43 7.44 -25.92 -0.19 0.23 16 13 C 0.14 -0.24 5.02 -67.12 -0.34 -0.58 16 14 H 0.12 -0.23 8.14 -51.93 -0.42 -0.65 16 15 N -0.36 -0.43 3.81 -54.08 -0.21 -0.64 16 16 C 0.05 0.01 10.69 -17.23 -0.18 -0.18 16 17 C -0.27 -0.24 10.80 -40.01 -0.43 -0.67 16 18 C 0.04 0.09 12.03 -17.37 -0.21 -0.12 16 19 N -0.30 -1.10 12.58 30.62 0.39 -0.72 16 20 C -0.14 0.53 7.01 -25.83 -0.18 0.35 16 21 C -0.24 -0.01 9.33 -39.23 -0.37 -0.38 16 22 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 23 H 0.38 -1.38 8.70 45.56 0.40 -0.99 16 24 H 0.11 -0.01 7.96 -51.93 -0.41 -0.42 16 25 H -0.26 -0.33 7.11 56.52 0.40 0.07 16 26 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 27 H 0.16 -0.22 4.91 -52.49 -0.26 -0.48 16 28 H 0.41 -0.83 8.60 -40.82 -0.35 -1.18 16 29 H 0.07 -0.25 7.64 -51.93 -0.40 -0.64 16 30 H 0.07 -0.25 7.93 -51.93 -0.41 -0.66 16 31 H 0.09 -0.25 8.10 -51.93 -0.42 -0.67 16 32 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 33 H 0.17 -0.49 6.69 -52.49 -0.35 -0.84 16 34 H 0.15 -0.14 8.06 -52.49 -0.42 -0.57 16 35 H 0.18 -0.13 8.06 -52.49 -0.42 -0.56 16 36 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 37 H 0.10 -0.38 6.08 -51.93 -0.32 -0.70 16 38 H 0.13 -0.23 6.71 -52.48 -0.35 -0.58 16 39 H 0.14 -0.11 8.06 -52.48 -0.42 -0.53 16 LS Contribution 325.75 15.07 4.91 4.91 Total: 0.00 -8.24 325.75 -10.40 -18.64 By element: Atomic # 1 Polarization: -6.90 SS G_CDS: -5.03 Total: -11.93 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -4.46 Total: -3.46 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -0.30 Total: -1.83 kcal Atomic # 8 Polarization: -0.02 SS G_CDS: -0.45 Total: -0.48 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -5.07 Total: -5.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -8.24 -10.40 -18.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.098 kcal (2) G-P(sol) polarization free energy of solvation -8.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds