Wall clock time and date at job start Mon Mar 8 2021 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86306 * 109.46700 * 2 1 4 4 C 1.50695 * 109.47060 * 119.99973 * 2 1 3 5 5 C 1.38026 * 120.33417 * 244.97628 * 4 2 1 6 6 N 1.31972 * 120.85087 * 179.75170 * 5 4 2 7 7 C 1.32398 * 121.62468 * 0.56257 * 6 5 4 8 8 N 1.39006 * 119.70003 * 179.71562 * 7 6 5 9 9 C 1.46501 * 119.99543 * 179.72916 * 8 7 6 10 10 C 1.52995 * 109.47334 * 179.97438 * 9 8 7 11 11 H 1.08999 * 112.85041 * 43.80092 * 10 9 8 12 12 C 1.53783 * 113.61701 * 175.00112 * 10 9 8 13 13 C 1.53781 * 87.08042 * 139.98175 * 12 10 9 14 14 H 1.08999 * 113.61671 * 89.20297 * 13 12 10 15 15 N 1.46502 * 113.61144 * 220.02103 * 13 12 10 16 16 C 1.34942 * 126.03991 * 83.49535 * 15 13 12 17 17 C 1.35316 * 107.74613 * 179.75096 * 16 15 13 18 18 C 1.39870 * 107.92161 * 0.39436 * 17 16 15 19 19 N 1.30836 * 108.20019 * 359.59732 * 18 17 16 20 20 C 1.53777 * 87.17293 * 334.60883 * 13 12 10 21 21 C 1.39127 * 120.58769 * 359.44067 * 7 6 5 22 22 C 1.38298 * 119.09835 * 0.27108 * 21 7 6 23 23 H 0.96694 * 113.99866 * 299.99415 * 1 2 3 24 24 H 1.09001 * 109.46675 * 240.00470 * 2 1 3 25 25 H 1.48495 * 109.99658 * 178.68228 * 3 2 1 26 26 H 1.48494 * 110.00079 * 299.99887 * 3 2 1 27 27 H 1.07999 * 119.56870 * 0.02739 * 5 4 2 28 28 H 0.96992 * 120.00350 * 359.72584 * 8 7 6 29 29 H 1.09006 * 109.47006 * 59.99463 * 9 8 7 30 30 H 1.08997 * 109.46904 * 300.00074 * 9 8 7 31 31 H 1.08999 * 113.61115 * 25.42786 * 12 10 9 32 32 H 1.09002 * 113.60805 * 254.52921 * 12 10 9 33 33 H 1.08002 * 126.12737 * 359.97438 * 16 15 13 34 34 H 1.07998 * 126.04386 * 180.27449 * 17 16 15 35 35 H 1.08002 * 125.90382 * 179.86983 * 18 17 16 36 36 H 1.09003 * 113.61582 * 139.94186 * 20 13 12 37 37 H 1.08999 * 113.61752 * 270.84328 * 20 13 12 38 38 H 1.08008 * 120.45226 * 180.25366 * 21 7 6 39 39 H 1.08009 * 120.74746 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6388 -0.0202 2.1939 6 7 3.0793 -0.6310 3.2776 7 6 2.8721 -1.9231 3.4789 8 7 3.3591 -2.5272 4.6323 9 6 3.1284 -3.9552 4.8644 10 6 3.7632 -4.3647 6.1949 11 1 3.5724 -3.6476 6.9933 12 6 3.4736 -5.8216 6.5931 13 6 4.9311 -5.8960 7.0780 14 1 5.0607 -5.5992 8.1187 15 7 5.5904 -7.1656 6.7621 16 6 6.1799 -7.4842 5.5908 17 6 6.6726 -8.7393 5.7050 18 6 6.3661 -9.2070 6.9870 19 7 5.7204 -8.2632 7.6228 20 6 5.2425 -4.7737 6.0739 21 6 2.1665 -2.6802 2.5492 22 6 1.6877 -2.0663 1.4062 23 1 -0.3933 0.4416 0.7650 24 1 1.7923 -0.5138 -0.8901 25 1 3.5345 1.7704 0.0321 26 1 1.5615 2.4679 -1.2084 27 1 2.8306 1.0344 2.0611 28 1 3.8515 -2.0034 5.2833 29 1 3.5769 -4.5319 4.0554 30 1 2.0564 -4.1493 4.8979 31 1 3.2619 -6.4722 5.7446 32 1 2.7413 -5.9177 7.3947 33 1 6.2494 -6.8497 4.7196 34 1 7.2064 -9.2844 4.9406 35 1 6.6224 -10.1777 7.3851 36 1 5.9361 -4.0252 6.4569 37 1 5.5152 -5.1374 5.0832 38 1 1.9953 -3.7333 2.7176 39 1 1.1362 -2.6286 0.6670 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567482_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:48 Heat of formation + Delta-G solvation = 125.693173 kcal Electronic energy + Delta-G solvation = -21455.813929 eV Core-core repulsion = 18175.024142 eV Total energy + Delta-G solvation = -3280.789787 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28943 -41.38181 -40.02675 -38.01095 -36.40280 -33.50621 -32.81613 -31.49576 -30.96368 -28.61620 -26.91002 -26.04051 -24.96728 -24.20890 -22.46200 -22.12963 -21.58065 -20.26000 -18.75194 -18.55238 -18.15073 -17.42743 -16.88452 -16.48536 -16.08633 -15.89353 -15.70046 -15.57835 -15.28911 -15.16077 -14.64173 -14.37803 -14.24899 -14.02376 -13.86188 -13.45748 -13.36142 -13.24753 -12.93555 -12.38046 -12.26400 -12.13460 -11.81205 -11.69087 -11.50508 -11.11094 -10.72932 -10.42557 -10.38129 -10.37583 -9.52639 -8.68482 -4.98704 0.23999 0.40604 0.93943 1.34778 1.58712 1.64784 1.91674 1.98166 2.11265 2.84827 3.17741 3.31810 3.55196 3.58636 3.63196 3.66301 3.80518 3.86389 4.02483 4.02673 4.13613 4.14233 4.29746 4.38029 4.50018 4.53654 4.58306 4.67163 4.69739 4.73271 4.76293 4.86169 4.89465 4.96323 5.01689 5.12764 5.25177 5.31988 5.53085 5.73246 6.02715 6.14779 6.55518 6.75662 6.80498 7.15593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.765 3.235 4 C -0.239 4.239 5 C 0.148 3.852 6 N -0.564 5.564 7 C 0.395 3.605 8 N -0.718 5.718 9 C 0.141 3.859 10 C -0.101 4.101 11 H 0.117 0.883 12 C -0.130 4.130 13 C 0.122 3.878 14 H 0.119 0.881 15 N -0.367 5.367 16 C 0.053 3.947 17 C -0.291 4.291 18 C 0.031 3.969 19 N -0.344 5.344 20 C -0.131 4.131 21 C -0.242 4.242 22 C -0.014 4.014 23 H 0.394 0.606 24 H 0.106 0.894 25 H -0.287 1.287 26 H -0.298 1.298 27 H 0.169 0.831 28 H 0.408 0.592 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.200 0.800 34 H 0.163 0.837 35 H 0.198 0.802 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 0.785 0.439 1.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.165 4.165 3 Si 0.672 3.328 4 C -0.244 4.244 5 C -0.009 4.009 6 N -0.282 5.282 7 C 0.159 3.841 8 N -0.351 5.351 9 C 0.017 3.983 10 C -0.120 4.120 11 H 0.135 0.865 12 C -0.169 4.169 13 C 0.021 3.979 14 H 0.137 0.863 15 N -0.149 5.149 16 C -0.093 4.093 17 C -0.320 4.320 18 C -0.154 4.154 19 N -0.165 5.165 20 C -0.169 4.169 21 C -0.267 4.267 22 C -0.040 4.040 23 H 0.244 0.756 24 H 0.124 0.876 25 H -0.214 1.214 26 H -0.226 1.226 27 H 0.185 0.815 28 H 0.245 0.755 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.217 0.783 34 H 0.180 0.820 35 H 0.215 0.785 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.166 0.834 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.515 1.758 1.286 2.239 hybrid contribution 0.376 -1.279 -1.250 1.828 sum -0.138 0.479 0.036 0.500 Atomic orbital electron populations 1.86458 1.17444 1.82127 1.50460 1.24842 0.85023 1.10095 0.96557 0.93894 0.77911 0.75847 0.85187 1.21032 1.06962 0.96264 1.00150 1.22444 0.91438 0.99491 0.87537 1.67145 1.26814 1.09854 1.24402 1.18621 0.89588 0.88379 0.87554 1.44547 1.60323 1.09815 1.20390 1.21441 1.00910 0.79435 0.96481 1.22475 0.94934 0.96773 0.97836 0.86512 1.23401 0.95300 0.96029 1.02204 1.23150 0.93805 0.79175 1.01799 0.86272 1.48971 1.43712 1.12508 1.09675 1.22972 0.96698 0.97844 0.91798 1.21881 1.13021 0.97358 0.99712 1.24356 0.97161 0.99549 0.94315 1.77311 1.24138 0.96215 1.18853 1.23586 0.97754 0.96054 0.99516 1.21631 1.06367 1.02113 0.96589 1.21403 0.93169 0.93631 0.95751 0.75624 0.87610 1.21446 1.22555 0.81474 0.75547 0.90924 0.90857 0.89088 0.89660 0.78317 0.81981 0.78522 0.88937 0.88009 0.83398 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.15 12.84 -148.98 -1.91 -1.76 16 2 C -0.05 0.05 2.82 71.23 0.20 0.25 16 3 Si 0.76 -1.58 29.83 68.60 2.05 0.47 16 4 C -0.24 -0.07 5.36 -19.76 -0.11 -0.18 16 5 C 0.15 0.19 9.84 84.62 0.83 1.02 16 6 N -0.56 -2.27 10.39 -193.27 -2.01 -4.28 16 7 C 0.39 0.47 7.65 133.06 1.02 1.49 16 8 N -0.72 2.90 5.73 -345.08 -1.98 0.92 16 9 C 0.14 -1.19 4.73 86.38 0.41 -0.78 16 10 C -0.10 1.00 3.75 -10.21 -0.04 0.96 16 11 H 0.12 -1.29 8.14 -2.39 -0.02 -1.31 16 12 C -0.13 0.87 7.44 31.12 0.23 1.10 16 13 C 0.12 -0.44 5.02 45.52 0.23 -0.21 16 14 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 15 N -0.37 -0.96 3.81 -325.00 -1.24 -2.20 16 16 C 0.05 -0.01 10.69 83.54 0.89 0.88 16 17 C -0.29 -0.52 10.80 21.99 0.24 -0.28 16 18 C 0.03 0.15 12.03 85.24 1.03 1.17 16 19 N -0.34 -2.93 12.58 -57.02 -0.72 -3.64 16 20 C -0.13 1.13 7.01 31.18 0.22 1.35 16 21 C -0.24 0.15 9.33 22.50 0.21 0.36 16 22 C -0.01 0.00 9.83 22.44 0.22 0.22 16 23 H 0.39 -3.13 8.70 -74.06 -0.64 -3.77 16 24 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 25 H -0.29 -0.90 7.11 99.48 0.71 -0.19 16 26 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 27 H 0.17 -0.51 4.91 -2.91 -0.01 -0.53 16 28 H 0.41 -1.99 8.60 -92.71 -0.80 -2.79 16 29 H 0.07 -0.66 7.64 -2.38 -0.02 -0.68 16 30 H 0.07 -0.62 7.93 -2.39 -0.02 -0.64 16 31 H 0.09 -0.53 8.10 -2.39 -0.02 -0.54 16 32 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.20 -1.47 6.69 -2.91 -0.02 -1.49 16 34 H 0.16 -0.38 8.06 -2.91 -0.02 -0.40 16 35 H 0.20 -0.09 8.06 -2.91 -0.02 -0.12 16 36 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.10 -0.98 6.08 -2.39 -0.01 -1.00 16 38 H 0.15 -0.70 6.71 -2.91 -0.02 -0.72 16 39 H 0.14 -0.29 8.06 -2.91 -0.02 -0.32 16 Total: 0.00 -19.77 325.75 -0.54 -20.31 By element: Atomic # 1 Polarization: -16.86 SS G_CDS: -0.32 Total: -17.18 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.58 Total: 7.36 kcal Atomic # 7 Polarization: -3.27 SS G_CDS: -5.94 Total: -9.21 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -1.91 Total: -1.76 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: 2.05 Total: 0.47 kcal Total: -19.77 -0.54 -20.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.005 kcal (2) G-P(sol) polarization free energy of solvation -19.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds