Wall clock time and date at job start Mon Mar 8 2021 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.47079 * 2 1 4 4 C 1.50701 * 109.47092 * 120.00092 * 2 1 3 5 5 C 1.33324 * 125.95152 * 64.97391 * 4 2 1 6 6 N 1.32116 * 114.58001 * 179.75276 * 5 4 2 7 7 C 1.29690 * 116.86770 * 0.47409 * 6 5 4 8 8 N 1.38605 * 124.95254 * 179.81851 * 7 6 5 9 9 C 1.46493 * 119.99996 * 359.68847 * 8 7 6 10 10 C 1.53003 * 109.47111 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.91098 * 43.75037 * 10 9 8 12 12 C 1.53781 * 113.61480 * 175.00222 * 10 9 8 13 13 C 1.53786 * 87.17350 * 139.93948 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 N 1.46501 * 113.61366 * 220.06429 * 13 12 10 16 16 C 1.34949 * 126.03988 * 84.99635 * 15 13 12 17 17 C 1.35319 * 107.74506 * 179.97438 * 16 15 13 18 18 C 1.39869 * 107.92165 * 0.02562 * 17 16 15 19 19 N 1.30843 * 108.20265 * 359.73581 * 18 17 16 20 20 C 1.53782 * 113.61259 * 272.50057 * 10 9 8 21 21 S 1.70975 * 110.09620 * 359.54611 * 7 6 5 22 22 H 0.96710 * 113.99551 * 299.99938 * 1 2 3 23 23 H 1.09001 * 109.46712 * 239.99934 * 2 1 3 24 24 H 1.48499 * 109.99672 * 178.68208 * 3 2 1 25 25 H 1.48495 * 109.99944 * 300.00135 * 3 2 1 26 26 H 1.08002 * 122.71140 * 359.97438 * 5 4 2 27 27 H 0.97001 * 119.99550 * 179.69658 * 8 7 6 28 28 H 1.08994 * 109.47006 * 60.00598 * 9 8 7 29 29 H 1.09002 * 109.47617 * 300.00052 * 9 8 7 30 30 H 1.09002 * 113.61445 * 254.52948 * 12 10 9 31 31 H 1.09002 * 113.61408 * 25.34678 * 12 10 9 32 32 H 1.07996 * 126.12834 * 359.95709 * 16 15 13 33 33 H 1.07992 * 126.03712 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.90358 * 180.02562 * 18 17 16 35 35 H 1.08997 * 113.61668 * 334.56352 * 20 10 9 36 36 H 1.08998 * 113.61674 * 105.38861 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7618 -2.0025 1.5124 6 7 2.3019 -2.3914 2.6537 7 6 2.9114 -1.4848 3.3527 8 7 3.5316 -1.7062 4.5723 9 6 3.5228 -3.0454 5.1661 10 6 4.2695 -3.0162 6.5012 11 1 4.0133 -2.1505 7.1119 12 6 4.2141 -4.3485 7.2673 13 6 5.6874 -4.1092 7.6376 14 1 5.8195 -3.5429 8.5595 15 7 6.5087 -5.3215 7.5904 16 6 7.1081 -5.8323 6.4945 17 6 7.7687 -6.9520 6.8699 18 6 7.5657 -7.1320 8.2420 19 7 6.8149 -6.1522 8.6760 20 6 5.7837 -3.2476 6.3653 21 16 2.8449 0.0216 2.5468 22 1 -0.3933 0.4418 0.7652 23 1 1.7923 -0.5139 -0.8900 24 1 3.5346 1.7702 0.0321 25 1 1.5615 2.4678 -1.2084 26 1 1.2293 -2.6775 0.8588 27 1 3.9714 -0.9744 5.0326 28 1 4.0135 -3.7457 4.4902 29 1 2.4933 -3.3622 5.3329 30 1 3.5403 -4.3319 8.1239 31 1 4.0606 -5.2155 6.6248 32 1 7.0675 -5.4212 5.4967 33 1 8.3494 -7.5937 6.2239 34 1 7.9640 -7.9376 8.8408 35 1 6.0608 -3.8139 5.4761 36 1 6.3770 -2.3422 6.4924 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567482_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:52 Heat of formation + Delta-G solvation = 132.655461 kcal Electronic energy + Delta-G solvation = -20051.169525 eV Core-core repulsion = 16859.833891 eV Total energy + Delta-G solvation = -3191.335634 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29760 -40.81207 -40.10483 -37.99283 -36.52632 -32.83298 -31.42411 -30.93609 -29.05613 -27.15903 -26.40293 -25.02502 -24.00975 -22.24093 -21.78042 -20.85331 -20.41793 -19.72489 -18.40243 -18.13469 -17.13300 -16.96515 -16.57408 -16.18937 -15.92051 -15.74061 -15.44805 -15.31759 -14.95103 -14.77969 -14.45152 -14.02862 -13.98164 -13.52640 -13.43360 -13.13911 -12.88125 -12.51700 -12.35257 -12.07653 -12.00271 -11.87693 -11.51532 -11.23252 -10.82351 -10.31650 -10.27007 -10.18912 -9.49295 -8.79713 -5.16523 -0.05792 -0.00378 0.65962 0.97141 1.23711 1.52691 1.56765 1.89085 1.98536 2.00704 2.03929 2.95959 3.06781 3.34975 3.37011 3.43342 3.67489 3.76896 3.91686 3.92767 3.96957 4.13285 4.30313 4.36136 4.45698 4.46707 4.56526 4.60450 4.65651 4.72198 4.77336 4.86821 4.99444 5.08894 5.14007 5.73426 5.76763 5.95751 6.09350 6.50693 6.81997 6.96642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.011 4.011 3 Si 0.657 3.343 4 C -0.306 4.306 5 C 0.119 3.881 6 N -0.551 5.551 7 C 0.325 3.675 8 N -0.693 5.693 9 C 0.148 3.852 10 C -0.121 4.121 11 H 0.108 0.892 12 C -0.134 4.134 13 C 0.137 3.863 14 H 0.124 0.876 15 N -0.363 5.363 16 C 0.052 3.948 17 C -0.273 4.273 18 C 0.045 3.955 19 N -0.297 5.297 20 C -0.141 4.141 21 S 0.087 5.913 22 H 0.380 0.620 23 H 0.122 0.878 24 H -0.242 1.242 25 H -0.236 1.236 26 H 0.176 0.824 27 H 0.415 0.585 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.183 0.817 35 H 0.096 0.904 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 3.261 1.269 3.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.125 4.125 3 Si 0.557 3.443 4 C -0.429 4.429 5 C -0.032 4.032 6 N -0.276 5.276 7 C -0.046 4.046 8 N -0.333 5.333 9 C 0.022 3.978 10 C -0.140 4.140 11 H 0.126 0.874 12 C -0.173 4.173 13 C 0.035 3.965 14 H 0.141 0.859 15 N -0.145 5.145 16 C -0.094 4.094 17 C -0.303 4.303 18 C -0.141 4.141 19 N -0.118 5.118 20 C -0.179 4.179 21 S 0.336 5.664 22 H 0.227 0.773 23 H 0.139 0.861 24 H -0.166 1.166 25 H -0.159 1.159 26 H 0.193 0.807 27 H 0.252 0.748 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.188 0.812 33 H 0.166 0.834 34 H 0.200 0.800 35 H 0.114 0.886 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.698 4.463 1.806 4.865 hybrid contribution 0.291 -1.361 -1.166 1.816 sum 0.990 3.101 0.641 3.318 Atomic orbital electron populations 1.86521 1.16920 1.81685 1.49115 1.24123 0.84834 1.08920 0.94620 0.94991 0.81956 0.77920 0.89386 1.25581 1.14981 0.98321 1.03988 1.21330 0.96533 0.93149 0.92154 1.66484 1.18796 1.33593 1.08760 1.23730 0.95563 0.93255 0.92022 1.43993 1.59435 1.12230 1.17654 1.21347 1.01136 0.83155 0.92123 1.22630 0.95086 0.99577 0.96717 0.87417 1.23435 0.95632 0.97343 1.00903 1.22871 0.89955 0.82974 1.00690 0.85852 1.48707 1.39373 1.20861 1.05596 1.22464 0.97111 0.96269 0.93519 1.21566 1.10711 1.01672 0.96325 1.23955 0.97323 0.97776 0.95092 1.77391 1.19712 1.04673 1.10023 1.23608 0.96744 1.00300 0.97262 1.83941 1.55710 1.11427 1.15333 0.77281 0.86096 1.16599 1.15916 0.80728 0.74791 0.91079 0.90789 0.89503 0.88739 0.81199 0.83448 0.79966 0.88554 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.02 12.88 -35.23 -0.45 -0.47 16 2 C -0.01 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.62 31.07 -169.99 -5.28 -5.90 16 4 C -0.31 -0.12 5.73 -36.02 -0.21 -0.32 16 5 C 0.12 0.19 11.24 -19.15 -0.22 -0.02 16 6 N -0.55 -1.36 10.14 -15.21 -0.15 -1.51 16 7 C 0.32 0.15 8.09 -87.68 -0.71 -0.55 16 8 N -0.69 1.49 5.71 -62.30 -0.36 1.13 16 9 C 0.15 -0.37 5.79 -4.04 -0.02 -0.40 16 10 C -0.12 0.52 3.76 -89.80 -0.34 0.18 16 11 H 0.11 -0.59 8.14 -51.93 -0.42 -1.01 16 12 C -0.13 0.36 7.43 -25.92 -0.19 0.16 16 13 C 0.14 -0.23 5.05 -67.02 -0.34 -0.57 16 14 H 0.12 -0.24 8.14 -51.93 -0.42 -0.66 16 15 N -0.36 -0.51 3.81 -53.98 -0.21 -0.71 16 16 C 0.05 0.02 10.69 -17.22 -0.18 -0.16 16 17 C -0.27 -0.32 10.80 -40.01 -0.43 -0.75 16 18 C 0.04 0.10 12.03 -17.36 -0.21 -0.11 16 19 N -0.30 -1.16 12.58 30.63 0.39 -0.77 16 20 C -0.14 0.55 6.99 -25.82 -0.18 0.37 16 21 S 0.09 -0.06 20.59 -107.50 -2.21 -2.27 16 22 H 0.38 -1.35 8.70 45.56 0.40 -0.96 16 23 H 0.12 -0.03 7.96 -51.93 -0.41 -0.45 16 24 H -0.24 -0.31 7.11 56.52 0.40 0.09 16 25 H -0.24 -0.41 7.11 56.52 0.40 0.00 16 26 H 0.18 0.10 8.06 -52.49 -0.42 -0.32 16 27 H 0.41 -1.82 8.60 -40.82 -0.35 -2.17 16 28 H 0.07 -0.10 7.84 -51.93 -0.41 -0.51 16 29 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 30 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 31 H 0.09 -0.15 8.10 -51.93 -0.42 -0.58 16 32 H 0.17 -0.42 6.69 -52.49 -0.35 -0.77 16 33 H 0.15 -0.10 8.06 -52.49 -0.42 -0.53 16 34 H 0.18 -0.10 8.06 -52.49 -0.42 -0.52 16 35 H 0.10 -0.36 6.07 -51.93 -0.32 -0.67 16 36 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 LS Contribution 320.40 15.07 4.83 4.83 Total: 0.00 -8.00 320.40 -10.81 -18.81 By element: Atomic # 1 Polarization: -6.62 SS G_CDS: -4.44 Total: -11.06 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.92 Total: -2.06 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: -0.33 Total: -1.87 kcal Atomic # 8 Polarization: -0.02 SS G_CDS: -0.45 Total: -0.47 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.28 Total: -5.90 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.21 Total: -2.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -8.00 -10.81 -18.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.466 kcal (2) G-P(sol) polarization free energy of solvation -7.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds