Wall clock time and date at job start Mon Mar 8 2021 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.47079 * 2 1 4 4 C 1.50701 * 109.47092 * 120.00092 * 2 1 3 5 5 C 1.33324 * 125.95152 * 64.97391 * 4 2 1 6 6 N 1.32116 * 114.58001 * 179.75276 * 5 4 2 7 7 C 1.29690 * 116.86770 * 0.47409 * 6 5 4 8 8 N 1.38605 * 124.95254 * 179.81851 * 7 6 5 9 9 C 1.46493 * 119.99996 * 359.68847 * 8 7 6 10 10 C 1.53003 * 109.47111 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.91098 * 43.75037 * 10 9 8 12 12 C 1.53781 * 113.61480 * 175.00222 * 10 9 8 13 13 C 1.53786 * 87.17350 * 139.93948 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 N 1.46501 * 113.61366 * 220.06429 * 13 12 10 16 16 C 1.34949 * 126.03988 * 84.99635 * 15 13 12 17 17 C 1.35319 * 107.74506 * 179.97438 * 16 15 13 18 18 C 1.39869 * 107.92165 * 0.02562 * 17 16 15 19 19 N 1.30843 * 108.20265 * 359.73581 * 18 17 16 20 20 C 1.53782 * 113.61259 * 272.50057 * 10 9 8 21 21 S 1.70975 * 110.09620 * 359.54611 * 7 6 5 22 22 H 0.96710 * 113.99551 * 299.99938 * 1 2 3 23 23 H 1.09001 * 109.46712 * 239.99934 * 2 1 3 24 24 H 1.48499 * 109.99672 * 178.68208 * 3 2 1 25 25 H 1.48495 * 109.99944 * 300.00135 * 3 2 1 26 26 H 1.08002 * 122.71140 * 359.97438 * 5 4 2 27 27 H 0.97001 * 119.99550 * 179.69658 * 8 7 6 28 28 H 1.08994 * 109.47006 * 60.00598 * 9 8 7 29 29 H 1.09002 * 109.47617 * 300.00052 * 9 8 7 30 30 H 1.09002 * 113.61445 * 254.52948 * 12 10 9 31 31 H 1.09002 * 113.61408 * 25.34678 * 12 10 9 32 32 H 1.07996 * 126.12834 * 359.95709 * 16 15 13 33 33 H 1.07992 * 126.03712 * 179.97438 * 17 16 15 34 34 H 1.08000 * 125.90358 * 180.02562 * 18 17 16 35 35 H 1.08997 * 113.61668 * 334.56352 * 20 10 9 36 36 H 1.08998 * 113.61674 * 105.38861 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7618 -2.0025 1.5124 6 7 2.3019 -2.3914 2.6537 7 6 2.9114 -1.4848 3.3527 8 7 3.5316 -1.7062 4.5723 9 6 3.5228 -3.0454 5.1661 10 6 4.2695 -3.0162 6.5012 11 1 4.0133 -2.1505 7.1119 12 6 4.2141 -4.3485 7.2673 13 6 5.6874 -4.1092 7.6376 14 1 5.8195 -3.5429 8.5595 15 7 6.5087 -5.3215 7.5904 16 6 7.1081 -5.8323 6.4945 17 6 7.7687 -6.9520 6.8699 18 6 7.5657 -7.1320 8.2420 19 7 6.8149 -6.1522 8.6760 20 6 5.7837 -3.2476 6.3653 21 16 2.8449 0.0216 2.5468 22 1 -0.3933 0.4418 0.7652 23 1 1.7923 -0.5139 -0.8900 24 1 3.5346 1.7702 0.0321 25 1 1.5615 2.4678 -1.2084 26 1 1.2293 -2.6775 0.8588 27 1 3.9714 -0.9744 5.0326 28 1 4.0135 -3.7457 4.4902 29 1 2.4933 -3.3622 5.3329 30 1 3.5403 -4.3319 8.1239 31 1 4.0606 -5.2155 6.6248 32 1 7.0675 -5.4212 5.4967 33 1 8.3494 -7.5937 6.2239 34 1 7.9640 -7.9376 8.8408 35 1 6.0608 -3.8139 5.4761 36 1 6.3770 -2.3422 6.4924 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567482_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:51 Heat of formation + Delta-G solvation = 133.859018 kcal Electronic energy + Delta-G solvation = -20051.117334 eV Core-core repulsion = 16859.833891 eV Total energy + Delta-G solvation = -3191.283443 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28388 -40.79232 -39.97820 -37.95306 -36.43699 -32.81211 -31.42159 -30.97943 -28.96465 -26.92259 -26.37761 -24.96522 -23.96601 -22.17984 -21.78313 -20.81628 -20.32432 -19.62646 -18.35133 -18.10831 -16.92934 -16.90088 -16.53039 -16.14401 -15.86582 -15.71217 -15.43441 -15.28167 -14.93526 -14.73538 -14.39240 -14.04509 -13.87406 -13.41507 -13.28691 -13.01565 -12.84830 -12.45478 -12.30165 -12.03218 -11.82166 -11.71806 -11.50853 -11.14411 -10.82231 -10.38224 -10.27113 -10.16815 -9.53069 -8.73670 -5.11747 -0.05392 0.03155 0.66694 0.93354 1.26993 1.57862 1.59639 1.89492 1.91174 1.97122 2.17900 3.16214 3.30222 3.51204 3.56706 3.59605 3.77214 3.87810 3.94359 4.02378 4.15935 4.30769 4.48089 4.49449 4.58460 4.68604 4.69359 4.71258 4.75883 4.85388 4.88267 4.96071 5.03565 5.12286 5.28414 5.72944 5.79672 6.14232 6.16901 6.72873 6.75107 7.01647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.015 4.015 3 Si 0.734 3.266 4 C -0.310 4.310 5 C 0.103 3.897 6 N -0.582 5.582 7 C 0.314 3.686 8 N -0.682 5.682 9 C 0.153 3.847 10 C -0.100 4.100 11 H 0.127 0.873 12 C -0.134 4.134 13 C 0.123 3.877 14 H 0.125 0.875 15 N -0.367 5.367 16 C 0.052 3.948 17 C -0.291 4.291 18 C 0.031 3.969 19 N -0.342 5.342 20 C -0.130 4.130 21 S 0.120 5.880 22 H 0.395 0.605 23 H 0.118 0.882 24 H -0.269 1.269 25 H -0.273 1.273 26 H 0.175 0.825 27 H 0.427 0.573 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.198 0.802 33 H 0.162 0.838 34 H 0.199 0.801 35 H 0.097 0.903 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 4.391 1.333 4.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.128 4.128 3 Si 0.637 3.363 4 C -0.433 4.433 5 C -0.048 4.048 6 N -0.309 5.309 7 C -0.057 4.057 8 N -0.323 5.323 9 C 0.027 3.973 10 C -0.120 4.120 11 H 0.145 0.855 12 C -0.173 4.173 13 C 0.022 3.978 14 H 0.142 0.858 15 N -0.149 5.149 16 C -0.094 4.094 17 C -0.320 4.320 18 C -0.154 4.154 19 N -0.164 5.164 20 C -0.168 4.168 21 S 0.369 5.631 22 H 0.245 0.755 23 H 0.135 0.865 24 H -0.195 1.195 25 H -0.199 1.199 26 H 0.192 0.808 27 H 0.267 0.733 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.215 0.785 33 H 0.180 0.820 34 H 0.215 0.785 35 H 0.115 0.885 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.930 5.598 1.913 5.988 hybrid contribution 0.206 -1.711 -1.211 2.106 sum 1.136 3.887 0.702 4.110 Atomic orbital electron populations 1.86486 1.17043 1.82125 1.50267 1.24245 0.84868 1.09399 0.94312 0.94110 0.79081 0.75688 0.87407 1.25698 1.14880 0.98217 1.04490 1.21420 0.97205 0.93804 0.92388 1.66476 1.20041 1.34845 1.09491 1.23974 0.95429 0.93662 0.92602 1.44040 1.58673 1.12779 1.16814 1.21262 1.00523 0.82824 0.92677 1.22511 0.94577 0.99277 0.95614 0.85471 1.23394 0.95108 0.97873 1.00896 1.23185 0.90121 0.82540 1.01955 0.85754 1.48968 1.39407 1.21210 1.05282 1.22960 0.96105 0.95963 0.94371 1.21878 1.11436 1.02464 0.96218 1.24357 0.97069 0.97930 0.95999 1.77305 1.21235 1.05975 1.11848 1.23585 0.96983 1.00276 0.95958 1.83750 1.55000 1.10116 1.14238 0.75523 0.86470 1.19463 1.19902 0.80769 0.73338 0.92091 0.92048 0.89587 0.89928 0.78507 0.82023 0.78460 0.88486 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.03 12.88 -148.98 -1.92 -1.89 16 2 C -0.01 0.01 2.99 71.24 0.21 0.22 16 3 Si 0.73 -1.54 31.07 68.60 2.13 0.59 16 4 C -0.31 -0.23 5.73 24.57 0.14 -0.09 16 5 C 0.10 0.39 11.24 83.54 0.94 1.33 16 6 N -0.58 -3.10 10.14 -202.02 -2.05 -5.15 16 7 C 0.31 0.16 8.09 179.32 1.45 1.62 16 8 N -0.68 3.59 5.71 -351.02 -2.01 1.59 16 9 C 0.15 -0.84 5.79 86.38 0.50 -0.34 16 10 C -0.10 0.97 3.76 -10.27 -0.04 0.94 16 11 H 0.13 -1.66 8.14 -2.39 -0.02 -1.68 16 12 C -0.13 0.70 7.43 31.12 0.23 0.93 16 13 C 0.12 -0.43 5.05 45.58 0.23 -0.20 16 14 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 15 N -0.37 -1.17 3.81 -324.69 -1.24 -2.40 16 16 C 0.05 0.04 10.69 83.54 0.89 0.93 16 17 C -0.29 -0.76 10.80 21.99 0.24 -0.52 16 18 C 0.03 0.17 12.03 85.23 1.02 1.19 16 19 N -0.34 -3.04 12.58 -57.02 -0.72 -3.76 16 20 C -0.13 1.18 6.99 31.18 0.22 1.39 16 21 S 0.12 -0.26 20.59 -56.49 -1.16 -1.42 16 22 H 0.39 -3.02 8.70 -74.05 -0.64 -3.66 16 23 H 0.12 -0.02 7.96 -2.39 -0.02 -0.04 16 24 H -0.27 -0.63 7.11 99.48 0.71 0.07 16 25 H -0.27 -1.11 7.11 99.48 0.71 -0.40 16 26 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 27 H 0.43 -4.52 8.60 -92.71 -0.80 -5.31 16 28 H 0.06 -0.18 7.84 -2.39 -0.02 -0.19 16 29 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.08 -0.21 8.10 -2.39 -0.02 -0.23 16 32 H 0.20 -1.18 6.69 -2.91 -0.02 -1.20 16 33 H 0.16 -0.23 8.06 -2.91 -0.02 -0.26 16 34 H 0.20 -0.01 8.06 -2.91 -0.02 -0.04 16 35 H 0.10 -0.85 6.07 -2.39 -0.01 -0.87 16 36 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 Total: 0.00 -19.56 320.40 -1.21 -20.76 By element: Atomic # 1 Polarization: -15.44 SS G_CDS: -0.29 Total: -15.72 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.04 Total: 7.41 kcal Atomic # 7 Polarization: -3.72 SS G_CDS: -6.01 Total: -9.73 kcal Atomic # 8 Polarization: 0.03 SS G_CDS: -1.92 Total: -1.89 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.13 Total: 0.59 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -1.16 Total: -1.42 kcal Total: -19.56 -1.21 -20.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.623 kcal (2) G-P(sol) polarization free energy of solvation -19.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds