Wall clock time and date at job start Mon Mar 8 2021 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33328 * 125.95463 * 2 1 4 4 C 1.50699 * 122.70632 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47351 * 29.99721 * 4 3 2 6 6 Si 1.86305 * 109.47018 * 149.99936 * 4 3 2 7 7 N 1.32122 * 114.58345 * 179.75207 * 3 2 1 8 8 C 1.29686 * 116.86303 * 0.47790 * 7 3 2 9 9 N 1.38606 * 124.95124 * 179.81603 * 8 7 3 10 10 C 1.46496 * 120.00331 * 179.71819 * 9 8 7 11 11 C 1.53002 * 109.47180 * 179.97438 * 10 9 8 12 12 H 1.08997 * 112.84722 * 316.19030 * 11 10 9 13 13 C 1.53779 * 113.61714 * 87.49864 * 11 10 9 14 14 C 1.53785 * 87.08048 * 139.98023 * 13 11 10 15 15 H 1.09008 * 113.68892 * 89.12832 * 14 13 11 16 16 N 1.46503 * 113.61623 * 220.02108 * 14 13 11 17 17 C 1.34939 * 126.03492 * 12.49564 * 16 14 13 18 18 C 1.35315 * 107.74580 * 179.97438 * 17 16 14 19 19 C 1.39870 * 107.92072 * 0.02562 * 18 17 16 20 20 N 1.30839 * 108.20307 * 359.97438 * 19 18 17 21 21 C 1.53784 * 113.61364 * 185.00332 * 11 10 9 22 22 S 1.70969 * 110.10240 * 359.54190 * 8 7 3 23 23 H 1.08997 * 109.46826 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46880 * 299.96986 * 1 2 3 25 25 H 1.09000 * 109.46799 * 59.97378 * 1 2 3 26 26 H 1.08998 * 109.47431 * 269.99736 * 4 3 2 27 27 H 0.96698 * 113.99701 * 60.00216 * 5 4 3 28 28 H 1.48504 * 109.99708 * 180.02562 * 6 4 3 29 29 H 1.48496 * 109.99879 * 301.31380 * 6 4 3 30 30 H 0.97002 * 119.99693 * 359.71622 * 9 8 7 31 31 H 1.08999 * 109.47084 * 59.99549 * 10 9 8 32 32 H 1.08997 * 109.47114 * 299.99747 * 10 9 8 33 33 H 1.09001 * 113.61277 * 25.43678 * 13 11 10 34 34 H 1.08990 * 113.61747 * 254.52765 * 13 11 10 35 35 H 1.07999 * 126.13245 * 0.02562 * 17 16 14 36 36 H 1.07999 * 126.04347 * 179.73376 * 18 17 16 37 37 H 1.08001 * 125.90246 * 179.97438 * 19 18 17 38 38 H 1.08993 * 113.61927 * 105.46661 * 21 11 10 39 39 H 1.08993 * 113.61116 * 334.55894 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.4815 2.5019 0.6746 6 14 2.9327 3.6147 0.8787 7 7 3.5851 0.8188 0.0052 8 6 3.9315 -0.4310 -0.0001 9 7 5.2384 -0.8927 0.0004 10 6 5.5065 -2.3329 0.0003 11 6 7.0180 -2.5703 0.0003 12 1 7.5486 -1.9199 -0.6951 13 6 7.6362 -2.6052 1.4079 14 6 8.5130 -3.7657 0.9085 15 1 9.4539 -3.4432 0.4623 16 7 8.6879 -4.8355 1.8940 17 6 7.9834 -4.9867 3.0349 18 6 8.4475 -6.0919 3.6628 19 6 9.4710 -6.6344 2.8789 20 7 9.6159 -5.8822 1.8182 21 6 7.4088 -4.0526 -0.1227 22 16 2.5413 -1.4261 0.0000 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8903 25 1 -0.3633 0.5143 -0.8898 26 1 1.6089 2.8217 -1.0269 27 1 0.5241 2.2119 1.5961 28 1 2.4031 5.0020 0.8866 29 1 3.1464 3.1452 2.2712 30 1 5.9755 -0.2621 0.0008 31 1 5.0682 -2.7840 -0.8899 32 1 5.0675 -2.7842 0.8901 33 1 6.9313 -2.8947 2.1873 34 1 8.2013 -1.7078 1.6590 35 1 7.1907 -4.3417 3.3841 36 1 8.0936 -6.4831 4.6052 37 1 10.0430 -7.5210 3.1093 38 1 7.7903 -4.3234 -1.1071 39 1 6.6417 -4.7376 0.2383 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567482_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:56 Heat of formation + Delta-G solvation = 129.878992 kcal Electronic energy + Delta-G solvation = -22086.208513 eV Core-core repulsion = 18739.214864 eV Total energy + Delta-G solvation = -3346.993649 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.34565 -41.06714 -40.30152 -38.06909 -36.60518 -33.20430 -32.38556 -30.99003 -29.83216 -28.23816 -27.19767 -25.62350 -24.73614 -24.08591 -22.31139 -21.84062 -20.74467 -20.28166 -19.19992 -18.46519 -17.92018 -17.35884 -17.15849 -16.70008 -16.27939 -15.92102 -15.68625 -15.48512 -15.36053 -14.97080 -14.62597 -14.15581 -14.08949 -13.87831 -13.75092 -13.65387 -13.50502 -13.43988 -13.17797 -12.73296 -12.56244 -12.32545 -12.11226 -11.91521 -11.79629 -11.55132 -11.08612 -10.62680 -10.52565 -10.35059 -10.01398 -9.52866 -8.67076 -4.68711 -0.00085 0.14584 0.75081 0.93480 1.37123 1.47659 1.79666 1.81749 1.94300 1.95334 2.10178 2.90144 2.99278 3.24115 3.29058 3.34225 3.52525 3.66778 3.85167 3.90268 4.00323 4.12927 4.18627 4.28906 4.31667 4.36138 4.38207 4.49993 4.57814 4.59463 4.71152 4.77062 4.82092 4.87046 4.96111 5.04115 5.10647 5.25631 5.48230 5.73355 6.05600 6.18442 6.35578 6.78653 6.92037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.242 4.242 3 C 0.068 3.932 4 C -0.042 4.042 5 O -0.525 6.525 6 Si 0.722 3.278 7 N -0.538 5.538 8 C 0.318 3.682 9 N -0.693 5.693 10 C 0.134 3.866 11 C -0.116 4.116 12 H 0.112 0.888 13 C -0.141 4.141 14 C 0.138 3.862 15 H 0.125 0.875 16 N -0.364 5.364 17 C 0.051 3.949 18 C -0.273 4.273 19 C 0.045 3.955 20 N -0.297 5.297 21 C -0.135 4.135 22 S 0.100 5.900 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.375 0.625 28 H -0.261 1.261 29 H -0.268 1.268 30 H 0.414 0.586 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.184 0.816 38 H 0.088 0.912 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -1.356 0.015 1.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.364 4.364 3 C -0.062 4.062 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.623 3.377 7 N -0.265 5.265 8 C -0.053 4.053 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.135 4.135 12 H 0.130 0.870 13 C -0.179 4.179 14 C 0.036 3.964 15 H 0.142 0.858 16 N -0.146 5.146 17 C -0.094 4.094 18 C -0.302 4.302 19 C -0.141 4.141 20 N -0.117 5.117 21 C -0.174 4.174 22 S 0.349 5.651 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.142 0.858 27 H 0.223 0.777 28 H -0.186 1.186 29 H -0.193 1.193 30 H 0.252 0.748 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.188 0.812 36 H 0.166 0.834 37 H 0.200 0.800 38 H 0.107 0.893 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.418 -1.221 -1.064 2.153 hybrid contribution -1.143 0.203 1.435 1.846 sum 0.276 -1.018 0.371 1.118 Atomic orbital electron populations 1.20145 0.86435 1.01686 1.03648 1.25114 1.01310 0.92697 1.17322 1.20073 0.86833 0.97143 1.02185 1.24473 0.91896 0.95355 1.03711 1.86627 1.28624 1.89030 1.28816 0.93641 0.86133 0.76408 0.81559 1.65725 1.17018 1.16419 1.27296 1.23243 0.91758 0.91479 0.98842 1.43871 1.01841 1.07032 1.80755 1.21511 0.95487 0.79548 1.02476 1.22546 0.94507 0.98318 0.98131 0.87008 1.23576 0.98761 0.98135 0.97424 1.22838 0.99555 0.85087 0.88950 0.85757 1.48704 1.27372 1.21302 1.17203 1.22456 0.98876 0.99531 0.88570 1.21570 1.04003 1.00074 1.04576 1.23961 0.98160 0.99777 0.92223 1.77397 1.12037 0.99370 1.22933 1.23463 0.98006 0.95489 1.00490 1.84010 0.96593 1.10585 1.73926 0.92288 0.90220 0.90508 0.85830 0.77680 1.18636 1.19260 0.74765 0.90802 0.91139 0.88526 0.89251 0.81200 0.83435 0.79955 0.89346 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.00 8.91 36.01 0.32 0.32 16 2 C -0.24 -0.34 6.50 -36.02 -0.23 -0.58 16 3 C 0.07 0.13 5.92 -84.18 -0.50 -0.37 16 4 C -0.04 -0.04 2.94 36.01 0.11 0.07 16 5 O -0.53 -0.48 10.17 -35.23 -0.36 -0.84 16 6 Si 0.72 0.70 32.08 -169.99 -5.45 -4.75 16 7 N -0.54 -1.11 8.94 -11.36 -0.10 -1.21 16 8 C 0.32 0.20 8.24 -87.69 -0.72 -0.52 16 9 N -0.69 1.52 5.71 -62.30 -0.36 1.16 16 10 C 0.13 -0.53 5.37 -4.04 -0.02 -0.55 16 11 C -0.12 0.58 3.75 -89.81 -0.34 0.25 16 12 H 0.11 -0.65 8.14 -51.93 -0.42 -1.07 16 13 C -0.14 0.63 6.98 -25.92 -0.18 0.44 16 14 C 0.14 -0.31 5.04 -67.11 -0.34 -0.65 16 15 H 0.12 -0.30 8.14 -51.92 -0.42 -0.72 16 16 N -0.36 -0.29 3.81 -54.07 -0.21 -0.49 16 17 C 0.05 -0.01 10.69 -17.23 -0.18 -0.20 16 18 C -0.27 -0.16 10.80 -40.01 -0.43 -0.60 16 19 C 0.04 0.08 12.03 -17.36 -0.21 -0.13 16 20 N -0.30 -1.01 12.58 30.63 0.39 -0.62 16 21 C -0.14 0.49 7.44 -25.91 -0.19 0.29 16 22 S 0.10 0.03 22.32 -107.50 -2.40 -2.37 16 23 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 24 H 0.08 -0.06 6.40 -51.93 -0.33 -0.39 16 25 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.12 0.03 7.96 -51.93 -0.41 -0.38 16 27 H 0.38 -0.56 8.13 45.56 0.37 -0.19 16 28 H -0.26 -0.87 7.11 56.52 0.40 -0.46 16 29 H -0.27 -0.98 7.11 56.52 0.40 -0.58 16 30 H 0.41 -1.30 8.60 -40.82 -0.35 -1.65 16 31 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.07 -0.28 7.84 -51.93 -0.41 -0.69 16 33 H 0.10 -0.44 6.07 -51.93 -0.32 -0.76 16 34 H 0.09 -0.43 8.14 -51.93 -0.42 -0.85 16 35 H 0.17 -0.55 6.69 -52.49 -0.35 -0.90 16 36 H 0.15 -0.18 8.06 -52.49 -0.42 -0.60 16 37 H 0.18 -0.17 8.06 -52.49 -0.42 -0.60 16 38 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 39 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 LS Contribution 337.32 15.07 5.08 5.08 Total: 0.00 -7.55 337.32 -11.55 -19.10 By element: Atomic # 1 Polarization: -7.61 SS G_CDS: -5.22 Total: -12.83 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.92 Total: -2.22 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -0.28 Total: -1.16 kcal Atomic # 8 Polarization: -0.48 SS G_CDS: -0.36 Total: -0.84 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: -5.45 Total: -4.75 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.40 Total: -2.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -7.55 -11.55 -19.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.980 kcal (2) G-P(sol) polarization free energy of solvation -7.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds