Wall clock time and date at job start Mon Mar 8 2021 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33328 * 125.95463 * 2 1 4 4 C 1.50699 * 122.70632 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47351 * 29.99721 * 4 3 2 6 6 Si 1.86305 * 109.47018 * 149.99936 * 4 3 2 7 7 N 1.32122 * 114.58345 * 179.75207 * 3 2 1 8 8 C 1.29686 * 116.86303 * 0.47790 * 7 3 2 9 9 N 1.38606 * 124.95124 * 179.81603 * 8 7 3 10 10 C 1.46496 * 120.00331 * 179.71819 * 9 8 7 11 11 C 1.53002 * 109.47180 * 179.97438 * 10 9 8 12 12 H 1.08997 * 112.84722 * 316.19030 * 11 10 9 13 13 C 1.53779 * 113.61714 * 87.49864 * 11 10 9 14 14 C 1.53785 * 87.08048 * 139.98023 * 13 11 10 15 15 H 1.09008 * 113.68892 * 89.12832 * 14 13 11 16 16 N 1.46503 * 113.61623 * 220.02108 * 14 13 11 17 17 C 1.34939 * 126.03492 * 12.49564 * 16 14 13 18 18 C 1.35315 * 107.74580 * 179.97438 * 17 16 14 19 19 C 1.39870 * 107.92072 * 0.02562 * 18 17 16 20 20 N 1.30839 * 108.20307 * 359.97438 * 19 18 17 21 21 C 1.53784 * 113.61364 * 185.00332 * 11 10 9 22 22 S 1.70969 * 110.10240 * 359.54190 * 8 7 3 23 23 H 1.08997 * 109.46826 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46880 * 299.96986 * 1 2 3 25 25 H 1.09000 * 109.46799 * 59.97378 * 1 2 3 26 26 H 1.08998 * 109.47431 * 269.99736 * 4 3 2 27 27 H 0.96698 * 113.99701 * 60.00216 * 5 4 3 28 28 H 1.48504 * 109.99708 * 180.02562 * 6 4 3 29 29 H 1.48496 * 109.99879 * 301.31380 * 6 4 3 30 30 H 0.97002 * 119.99693 * 359.71622 * 9 8 7 31 31 H 1.08999 * 109.47084 * 59.99549 * 10 9 8 32 32 H 1.08997 * 109.47114 * 299.99747 * 10 9 8 33 33 H 1.09001 * 113.61277 * 25.43678 * 13 11 10 34 34 H 1.08990 * 113.61747 * 254.52765 * 13 11 10 35 35 H 1.07999 * 126.13245 * 0.02562 * 17 16 14 36 36 H 1.07999 * 126.04347 * 179.73376 * 18 17 16 37 37 H 1.08001 * 125.90246 * 179.97438 * 19 18 17 38 38 H 1.08993 * 113.61927 * 105.46661 * 21 11 10 39 39 H 1.08993 * 113.61116 * 334.55894 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.4815 2.5019 0.6746 6 14 2.9327 3.6147 0.8787 7 7 3.5851 0.8188 0.0052 8 6 3.9315 -0.4310 -0.0001 9 7 5.2384 -0.8927 0.0004 10 6 5.5065 -2.3329 0.0003 11 6 7.0180 -2.5703 0.0003 12 1 7.5486 -1.9199 -0.6951 13 6 7.6362 -2.6052 1.4079 14 6 8.5130 -3.7657 0.9085 15 1 9.4539 -3.4432 0.4623 16 7 8.6879 -4.8355 1.8940 17 6 7.9834 -4.9867 3.0349 18 6 8.4475 -6.0919 3.6628 19 6 9.4710 -6.6344 2.8789 20 7 9.6159 -5.8822 1.8182 21 6 7.4088 -4.0526 -0.1227 22 16 2.5413 -1.4261 0.0000 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8903 25 1 -0.3633 0.5143 -0.8898 26 1 1.6089 2.8217 -1.0269 27 1 0.5241 2.2119 1.5961 28 1 2.4031 5.0020 0.8866 29 1 3.1464 3.1452 2.2712 30 1 5.9755 -0.2621 0.0008 31 1 5.0682 -2.7840 -0.8899 32 1 5.0675 -2.7842 0.8901 33 1 6.9313 -2.8947 2.1873 34 1 8.2013 -1.7078 1.6590 35 1 7.1907 -4.3417 3.3841 36 1 8.0936 -6.4831 4.6052 37 1 10.0430 -7.5210 3.1093 38 1 7.7903 -4.3234 -1.1071 39 1 6.6417 -4.7376 0.2383 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567482_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:55 Heat of formation + Delta-G solvation = 133.060206 kcal Electronic energy + Delta-G solvation = -22086.070565 eV Core-core repulsion = 18739.214864 eV Total energy + Delta-G solvation = -3346.855702 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27875 -41.07317 -40.10125 -38.06786 -36.51131 -33.15990 -32.34686 -30.98585 -29.79170 -28.13062 -26.89349 -25.62557 -24.64448 -24.00269 -22.19034 -21.80999 -20.71317 -20.08422 -19.17254 -18.37809 -17.94549 -17.26749 -16.93405 -16.68951 -16.16098 -15.83312 -15.72328 -15.42294 -15.29064 -14.87378 -14.51890 -14.26675 -13.92327 -13.84937 -13.74106 -13.53803 -13.40290 -13.28237 -13.01824 -12.73607 -12.46168 -12.27671 -11.97729 -11.83279 -11.67668 -11.49696 -10.99630 -10.65567 -10.55962 -10.36926 -10.02383 -9.51595 -8.62176 -4.78737 -0.01769 0.16216 0.73326 0.95007 1.29882 1.59136 1.67146 1.83591 1.92582 1.94506 2.00192 3.15481 3.27731 3.32606 3.49764 3.57468 3.63835 3.86888 4.03312 4.11585 4.16342 4.24477 4.32475 4.44483 4.55325 4.58864 4.61877 4.65889 4.73398 4.80126 4.86572 4.87691 4.89524 4.96222 5.05143 5.13763 5.24796 5.28983 5.61349 5.74107 6.16003 6.31037 6.44339 6.76580 6.93200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.259 4.259 3 C 0.057 3.943 4 C -0.042 4.042 5 O -0.533 6.533 6 Si 0.784 3.216 7 N -0.558 5.558 8 C 0.312 3.688 9 N -0.683 5.683 10 C 0.133 3.867 11 C -0.098 4.098 12 H 0.124 0.876 13 C -0.131 4.131 14 C 0.122 3.878 15 H 0.121 0.879 16 N -0.366 5.366 17 C 0.053 3.947 18 C -0.291 4.291 19 C 0.031 3.969 20 N -0.343 5.343 21 C -0.132 4.132 22 S 0.115 5.885 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.385 0.615 28 H -0.294 1.294 29 H -0.304 1.304 30 H 0.419 0.581 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.201 0.799 36 H 0.162 0.838 37 H 0.197 0.803 38 H 0.086 0.914 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -1.362 -0.034 1.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.382 4.382 3 C -0.073 4.073 4 C -0.154 4.154 5 O -0.340 6.340 6 Si 0.690 3.310 7 N -0.287 5.287 8 C -0.060 4.060 9 N -0.325 5.325 10 C 0.009 3.991 11 C -0.117 4.117 12 H 0.142 0.858 13 C -0.169 4.169 14 C 0.021 3.979 15 H 0.139 0.861 16 N -0.148 5.148 17 C -0.093 4.093 18 C -0.320 4.320 19 C -0.154 4.154 20 N -0.165 5.165 21 C -0.171 4.171 22 S 0.364 5.636 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.148 0.852 27 H 0.234 0.766 28 H -0.222 1.222 29 H -0.231 1.231 30 H 0.259 0.741 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.217 0.783 36 H 0.180 0.820 37 H 0.214 0.786 38 H 0.105 0.895 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.143 -1.248 -1.131 2.035 hybrid contribution -1.033 0.179 1.486 1.819 sum 0.110 -1.069 0.355 1.132 Atomic orbital electron populations 1.20144 0.85811 1.02081 1.03642 1.25330 1.02024 0.93197 1.17629 1.20192 0.87094 0.97499 1.02531 1.24500 0.91728 0.95137 1.04070 1.86601 1.28662 1.89075 1.29672 0.92892 0.85266 0.73702 0.79181 1.65727 1.17136 1.17198 1.28600 1.23498 0.92804 0.91366 0.98328 1.44005 1.01044 1.07860 1.79576 1.21611 0.96121 0.78508 1.02811 1.22422 0.93823 0.97386 0.98060 0.85786 1.23572 0.98264 0.97325 0.97788 1.23153 1.00104 0.85338 0.89327 0.86092 1.48964 1.26839 1.21155 1.17888 1.22973 0.98898 0.99505 0.87926 1.21880 1.04125 1.00664 1.05345 1.24348 0.98680 1.00226 0.92153 1.77312 1.13973 1.00920 1.24254 1.23412 0.97347 0.96349 0.99950 1.83880 0.96071 1.09817 1.73845 0.91676 0.89693 0.91025 0.85184 0.76597 1.22199 1.23137 0.74117 0.90625 0.90665 0.87993 0.88488 0.78274 0.82037 0.78590 0.89497 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.01 8.91 71.24 0.63 0.64 16 2 C -0.26 -0.68 6.50 24.58 0.16 -0.52 16 3 C 0.06 0.22 5.92 41.40 0.25 0.46 16 4 C -0.04 -0.09 2.94 71.24 0.21 0.12 16 5 O -0.53 -1.02 10.17 -148.98 -1.52 -2.54 16 6 Si 0.78 2.01 32.08 68.60 2.20 4.21 16 7 N -0.56 -2.14 8.94 -189.86 -1.70 -3.84 16 8 C 0.31 0.17 8.24 179.32 1.48 1.64 16 9 N -0.68 3.85 5.71 -351.02 -2.01 1.84 16 10 C 0.13 -1.25 5.37 86.38 0.46 -0.79 16 11 C -0.10 1.12 3.75 -10.27 -0.04 1.08 16 12 H 0.12 -1.66 8.14 -2.39 -0.02 -1.68 16 13 C -0.13 1.34 6.98 31.12 0.22 1.56 16 14 C 0.12 -0.59 5.04 45.52 0.23 -0.36 16 15 H 0.12 -0.54 8.14 -2.38 -0.02 -0.56 16 16 N -0.37 -0.64 3.81 -324.97 -1.24 -1.88 16 17 C 0.05 -0.05 10.69 83.54 0.89 0.84 16 18 C -0.29 -0.37 10.80 21.99 0.24 -0.14 16 19 C 0.03 0.13 12.03 85.24 1.02 1.16 16 20 N -0.34 -2.69 12.58 -57.02 -0.72 -3.41 16 21 C -0.13 1.02 7.44 31.12 0.23 1.25 16 22 S 0.12 -0.01 22.32 -56.49 -1.26 -1.28 16 23 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 24 H 0.08 -0.13 6.40 -2.39 -0.02 -0.15 16 25 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.13 0.06 7.96 -2.39 -0.02 0.04 16 27 H 0.38 -1.08 8.13 -74.06 -0.60 -1.68 16 28 H -0.29 -2.31 7.11 99.48 0.71 -1.60 16 29 H -0.30 -2.61 7.11 99.48 0.71 -1.90 16 30 H 0.42 -3.23 8.60 -92.71 -0.80 -4.03 16 31 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H 0.08 -0.73 7.84 -2.39 -0.02 -0.74 16 33 H 0.10 -1.13 6.07 -2.39 -0.01 -1.14 16 34 H 0.10 -1.09 8.14 -2.39 -0.02 -1.10 16 35 H 0.20 -1.63 6.69 -2.91 -0.02 -1.65 16 36 H 0.16 -0.44 8.06 -2.91 -0.02 -0.46 16 37 H 0.20 -0.16 8.06 -2.91 -0.02 -0.19 16 38 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.09 -0.58 8.10 -2.39 -0.02 -0.59 16 Total: 0.00 -18.25 337.32 -0.52 -18.77 By element: Atomic # 1 Polarization: -18.58 SS G_CDS: -0.27 Total: -18.86 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.99 Total: 6.97 kcal Atomic # 7 Polarization: -1.63 SS G_CDS: -5.66 Total: -7.28 kcal Atomic # 8 Polarization: -1.02 SS G_CDS: -1.52 Total: -2.54 kcal Atomic # 14 Polarization: 2.01 SS G_CDS: 2.20 Total: 4.21 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.26 Total: -1.28 kcal Total: -18.25 -0.52 -18.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.835 kcal (2) G-P(sol) polarization free energy of solvation -18.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds