Wall clock time and date at job start Mon Mar 8 2021 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.47579 * 2 1 4 4 C 1.50702 * 109.46972 * 119.99970 * 2 1 3 5 5 C 1.37988 * 120.32423 * 245.02519 * 4 2 1 6 6 N 1.32017 * 120.89609 * 179.72071 * 5 4 2 7 7 C 1.32333 * 121.64561 * 0.51804 * 6 5 4 8 8 N 1.39149 * 119.71510 * 179.75109 * 7 6 5 9 9 C 1.46499 * 119.99974 * 359.73494 * 8 7 6 10 10 C 1.53000 * 109.46840 * 179.97438 * 9 8 7 11 11 H 1.08992 * 112.85173 * 43.80013 * 10 9 8 12 12 C 1.53787 * 113.61228 * 174.99997 * 10 9 8 13 13 C 1.53776 * 87.07971 * 139.97805 * 12 10 9 14 14 H 1.09006 * 113.61662 * 89.20162 * 13 12 10 15 15 N 1.46507 * 113.61558 * 220.01556 * 13 12 10 16 16 C 1.34944 * 126.03327 * 85.00076 * 15 13 12 17 17 C 1.35316 * 107.74457 * 179.97438 * 16 15 13 18 18 C 1.39875 * 107.92050 * 359.97438 * 17 16 15 19 19 N 1.30837 * 108.19682 * 359.74569 * 18 17 16 20 20 C 1.53781 * 87.08649 * 334.56685 * 13 12 10 21 21 C 1.39339 * 120.56539 * 359.48485 * 7 6 5 22 22 F 1.35104 * 120.47207 * 180.27145 * 21 7 6 23 23 C 1.38443 * 119.05870 * 0.24548 * 21 7 6 24 24 H 0.96708 * 113.99534 * 60.00253 * 1 2 3 25 25 H 1.08995 * 109.47686 * 239.99739 * 2 1 3 26 26 H 1.48495 * 109.99697 * 298.68213 * 3 2 1 27 27 H 1.48500 * 109.99750 * 59.99528 * 3 2 1 28 28 H 1.07992 * 119.55120 * 359.97154 * 5 4 2 29 29 H 0.97000 * 119.99605 * 179.72474 * 8 7 6 30 30 H 1.09002 * 109.47391 * 59.99422 * 9 8 7 31 31 H 1.09001 * 109.46813 * 299.99478 * 9 8 7 32 32 H 1.08999 * 113.61008 * 254.52793 * 12 10 9 33 33 H 1.09001 * 113.61614 * 25.34468 * 12 10 9 34 34 H 1.07997 * 126.13284 * 0.02562 * 16 15 13 35 35 H 1.07998 * 126.04079 * 180.02562 * 17 16 15 36 36 H 1.07995 * 125.89751 * 179.97438 * 18 17 16 37 37 H 1.08998 * 113.61029 * 270.89062 * 20 13 12 38 38 H 1.08997 * 113.61702 * 139.98220 * 20 13 12 39 39 H 1.08002 * 120.75817 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6376 -0.0200 2.1940 6 7 3.0782 -0.6298 3.2789 7 6 2.8715 -1.9210 3.4819 8 7 3.3583 -2.5242 4.6375 9 6 4.1010 -1.7314 5.6204 10 6 4.5195 -2.6280 6.7874 11 1 4.9097 -3.5921 6.4617 12 6 5.4121 -1.9190 7.8196 13 6 4.6163 -2.6650 8.9035 14 1 5.0331 -3.6394 9.1585 15 7 4.3206 -1.8467 10.0823 16 6 3.2755 -1.0045 10.2221 17 6 3.3602 -0.4426 11.4502 18 6 4.4957 -0.9595 12.0827 19 7 5.0688 -1.8056 11.2657 20 6 3.4576 -2.7334 7.8947 21 6 2.1658 -2.6806 2.5510 22 9 1.9511 -3.9976 2.7627 23 6 1.6872 -2.0665 1.4062 24 1 -0.3933 0.4417 -0.7652 25 1 1.7924 -0.5138 -0.8899 26 1 1.5880 2.4585 -1.2242 27 1 1.5615 2.4679 1.2084 28 1 2.8292 1.0344 2.0608 29 1 3.2057 -3.4695 4.7923 30 1 3.4675 -0.9255 5.9907 31 1 4.9888 -1.3087 5.1500 32 1 6.4601 -2.2140 7.7665 33 1 5.2776 -0.8376 7.8437 34 1 2.5085 -0.8138 9.4862 35 1 2.6722 0.2772 11.8684 36 1 4.8378 -0.7068 13.0753 37 1 2.7877 -1.8748 7.9404 38 1 2.9277 -3.6859 7.9023 39 1 1.1372 -2.6291 0.6663 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567482_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:59 Heat of formation + Delta-G solvation = 82.578007 kcal Electronic energy + Delta-G solvation = -23858.780628 eV Core-core repulsion = 20106.667251 eV Total energy + Delta-G solvation = -3752.113377 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.86536 -42.26769 -41.37345 -40.14340 -38.16601 -36.61355 -33.44178 -32.82789 -31.62737 -30.90041 -28.75574 -27.10428 -26.27353 -25.23387 -23.91271 -22.75933 -22.13962 -21.63662 -20.39216 -19.31706 -18.69228 -18.40685 -18.16642 -18.00965 -17.10563 -16.84375 -16.44429 -16.04491 -15.74739 -15.64402 -15.37645 -15.25459 -15.03527 -14.67294 -14.28724 -14.22351 -14.00948 -13.96009 -13.84347 -13.45698 -13.36566 -13.03862 -12.67119 -12.42658 -12.07230 -11.93854 -11.83176 -11.48151 -11.28149 -10.73351 -10.70647 -10.49242 -10.28129 -9.46120 -8.77447 -5.04854 -0.05761 0.13624 1.00509 1.17789 1.51190 1.55943 1.87240 1.91971 2.01401 2.52495 2.99389 3.07297 3.11388 3.20317 3.31684 3.41362 3.51005 3.61671 3.80418 3.85835 3.97589 4.03042 4.07713 4.18834 4.22773 4.36528 4.40889 4.49571 4.53000 4.62790 4.68243 4.70167 4.71279 4.82330 4.90987 4.99408 5.09212 5.16820 5.34606 5.79756 5.90309 6.12483 6.13863 6.35469 6.85274 6.94537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.063 4.063 3 Si 0.680 3.320 4 C -0.161 4.161 5 C 0.150 3.850 6 N -0.512 5.512 7 C 0.389 3.611 8 N -0.718 5.718 9 C 0.146 3.854 10 C -0.122 4.122 11 H 0.106 0.894 12 C -0.134 4.134 13 C 0.137 3.863 14 H 0.123 0.877 15 N -0.363 5.363 16 C 0.052 3.948 17 C -0.274 4.274 18 C 0.044 3.956 19 N -0.298 5.298 20 C -0.141 4.141 21 C -0.020 4.020 22 F -0.134 7.134 23 C -0.037 4.037 24 H 0.381 0.619 25 H 0.078 0.922 26 H -0.258 1.258 27 H -0.251 1.251 28 H 0.164 0.836 29 H 0.413 0.587 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.183 0.817 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 0.825 -3.435 3.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.173 4.173 3 Si 0.581 3.419 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.229 5.229 7 C 0.151 3.849 8 N -0.351 5.351 9 C 0.022 3.978 10 C -0.141 4.141 11 H 0.124 0.876 12 C -0.173 4.173 13 C 0.035 3.965 14 H 0.141 0.859 15 N -0.145 5.145 16 C -0.093 4.093 17 C -0.303 4.303 18 C -0.142 4.142 19 N -0.118 5.118 20 C -0.179 4.179 21 C -0.046 4.046 22 F -0.113 7.113 23 C -0.063 4.063 24 H 0.229 0.771 25 H 0.096 0.904 26 H -0.182 1.182 27 H -0.175 1.175 28 H 0.180 0.820 29 H 0.250 0.750 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.188 0.812 35 H 0.165 0.835 36 H 0.200 0.800 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.306 0.998 -2.363 3.449 hybrid contribution -2.479 -0.690 -0.934 2.737 sum -0.173 0.308 -3.297 3.316 Atomic orbital electron populations 1.86596 1.17804 1.80175 1.49893 1.24566 0.84461 1.10839 0.97481 0.95138 0.91544 0.74425 0.80792 1.19818 1.04541 0.93717 0.98575 1.22329 0.91869 0.99386 0.87110 1.67329 1.25311 1.07221 1.23001 1.18409 0.90618 0.88965 0.86931 1.44515 1.59663 1.12152 1.18799 1.21271 0.96197 0.93058 0.87257 1.22637 0.97325 1.00610 0.93510 0.87552 1.23431 0.99931 1.01038 0.92865 1.22866 0.98420 0.95016 0.80212 0.85900 1.48721 1.19880 1.33391 1.12487 1.22465 0.93395 0.94281 0.99203 1.21563 1.03206 1.09587 0.95977 1.23947 0.94847 0.95551 0.99839 1.77380 1.19146 1.22560 0.92751 1.23573 0.96496 1.04339 0.93504 1.17964 1.08696 0.79552 0.98406 1.91490 1.93666 1.31203 1.94901 1.21264 0.95345 0.94501 0.95232 0.77056 0.90375 1.18246 1.17550 0.81966 0.75020 0.91149 0.90788 0.89567 0.88720 0.81200 0.83469 0.79992 0.88549 0.89558 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.10 12.82 -35.23 -0.45 -0.55 16 2 C -0.06 0.08 2.81 36.01 0.10 0.18 16 3 Si 0.68 -1.40 29.88 -169.99 -5.08 -6.48 16 4 C -0.16 -0.08 5.39 -104.47 -0.56 -0.64 16 5 C 0.15 0.09 9.84 -17.56 -0.17 -0.08 16 6 N -0.51 -0.91 9.57 -12.36 -0.12 -1.03 16 7 C 0.39 0.55 7.49 -154.86 -1.16 -0.61 16 8 N -0.72 0.57 5.71 -60.34 -0.34 0.22 16 9 C 0.15 -0.28 5.53 -4.04 -0.02 -0.30 16 10 C -0.12 0.42 3.76 -89.80 -0.34 0.08 16 11 H 0.11 -0.45 8.14 -51.93 -0.42 -0.87 16 12 C -0.13 0.30 7.44 -25.92 -0.19 0.10 16 13 C 0.14 -0.15 5.04 -67.12 -0.34 -0.49 16 14 H 0.12 -0.16 8.14 -51.93 -0.42 -0.58 16 15 N -0.36 -0.66 3.81 -54.07 -0.21 -0.86 16 16 C 0.05 0.04 10.69 -17.23 -0.18 -0.14 16 17 C -0.27 -0.39 10.80 -40.01 -0.43 -0.82 16 18 C 0.04 0.11 12.03 -17.36 -0.21 -0.10 16 19 N -0.30 -1.25 12.57 30.62 0.39 -0.87 16 20 C -0.14 0.43 6.98 -25.92 -0.18 0.25 16 21 C -0.02 -0.03 7.35 -39.10 -0.29 -0.32 16 22 F -0.13 -0.27 16.65 2.25 0.04 -0.23 16 23 C -0.04 -0.04 9.82 -39.26 -0.39 -0.42 16 24 H 0.38 -1.43 8.74 45.56 0.40 -1.03 16 25 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 26 H -0.26 -0.01 7.11 56.52 0.40 0.39 16 27 H -0.25 -0.23 7.05 56.52 0.40 0.17 16 28 H 0.16 -0.24 4.87 -52.49 -0.26 -0.50 16 29 H 0.41 -0.82 7.94 -40.82 -0.32 -1.14 16 30 H 0.07 -0.08 7.84 -51.93 -0.41 -0.49 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 33 H 0.09 -0.13 8.10 -51.93 -0.42 -0.56 16 34 H 0.17 -0.35 6.69 -52.49 -0.35 -0.70 16 35 H 0.15 -0.07 8.06 -52.49 -0.42 -0.49 16 36 H 0.18 -0.06 8.06 -52.49 -0.42 -0.48 16 37 H 0.10 -0.29 6.07 -51.93 -0.32 -0.60 16 38 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 39 H 0.15 -0.02 8.06 -52.49 -0.42 -0.45 16 LS Contribution 333.21 15.07 5.02 5.02 Total: 0.00 -8.14 333.21 -9.79 -17.93 By element: Atomic # 1 Polarization: -5.16 SS G_CDS: -4.67 Total: -9.83 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -4.36 Total: -3.33 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -0.28 Total: -2.54 kcal Atomic # 8 Polarization: -0.10 SS G_CDS: -0.45 Total: -0.55 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.04 Total: -0.23 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.08 Total: -6.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -8.14 -9.79 -17.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.504 kcal (2) G-P(sol) polarization free energy of solvation -8.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds