Wall clock time and date at job start Mon Mar 8 2021 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.47579 * 2 1 4 4 C 1.50702 * 109.46972 * 119.99970 * 2 1 3 5 5 C 1.37988 * 120.32423 * 245.02519 * 4 2 1 6 6 N 1.32017 * 120.89609 * 179.72071 * 5 4 2 7 7 C 1.32333 * 121.64561 * 0.51804 * 6 5 4 8 8 N 1.39149 * 119.71510 * 179.75109 * 7 6 5 9 9 C 1.46499 * 119.99974 * 359.73494 * 8 7 6 10 10 C 1.53000 * 109.46840 * 179.97438 * 9 8 7 11 11 H 1.08992 * 112.85173 * 43.80013 * 10 9 8 12 12 C 1.53787 * 113.61228 * 174.99997 * 10 9 8 13 13 C 1.53776 * 87.07971 * 139.97805 * 12 10 9 14 14 H 1.09006 * 113.61662 * 89.20162 * 13 12 10 15 15 N 1.46507 * 113.61558 * 220.01556 * 13 12 10 16 16 C 1.34944 * 126.03327 * 85.00076 * 15 13 12 17 17 C 1.35316 * 107.74457 * 179.97438 * 16 15 13 18 18 C 1.39875 * 107.92050 * 359.97438 * 17 16 15 19 19 N 1.30837 * 108.19682 * 359.74569 * 18 17 16 20 20 C 1.53781 * 87.08649 * 334.56685 * 13 12 10 21 21 C 1.39339 * 120.56539 * 359.48485 * 7 6 5 22 22 F 1.35104 * 120.47207 * 180.27145 * 21 7 6 23 23 C 1.38443 * 119.05870 * 0.24548 * 21 7 6 24 24 H 0.96708 * 113.99534 * 60.00253 * 1 2 3 25 25 H 1.08995 * 109.47686 * 239.99739 * 2 1 3 26 26 H 1.48495 * 109.99697 * 298.68213 * 3 2 1 27 27 H 1.48500 * 109.99750 * 59.99528 * 3 2 1 28 28 H 1.07992 * 119.55120 * 359.97154 * 5 4 2 29 29 H 0.97000 * 119.99605 * 179.72474 * 8 7 6 30 30 H 1.09002 * 109.47391 * 59.99422 * 9 8 7 31 31 H 1.09001 * 109.46813 * 299.99478 * 9 8 7 32 32 H 1.08999 * 113.61008 * 254.52793 * 12 10 9 33 33 H 1.09001 * 113.61614 * 25.34468 * 12 10 9 34 34 H 1.07997 * 126.13284 * 0.02562 * 16 15 13 35 35 H 1.07998 * 126.04079 * 180.02562 * 17 16 15 36 36 H 1.07995 * 125.89751 * 179.97438 * 18 17 16 37 37 H 1.08998 * 113.61029 * 270.89062 * 20 13 12 38 38 H 1.08997 * 113.61702 * 139.98220 * 20 13 12 39 39 H 1.08002 * 120.75817 * 179.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6376 -0.0200 2.1940 6 7 3.0782 -0.6298 3.2789 7 6 2.8715 -1.9210 3.4819 8 7 3.3583 -2.5242 4.6375 9 6 4.1010 -1.7314 5.6204 10 6 4.5195 -2.6280 6.7874 11 1 4.9097 -3.5921 6.4617 12 6 5.4121 -1.9190 7.8196 13 6 4.6163 -2.6650 8.9035 14 1 5.0331 -3.6394 9.1585 15 7 4.3206 -1.8467 10.0823 16 6 3.2755 -1.0045 10.2221 17 6 3.3602 -0.4426 11.4502 18 6 4.4957 -0.9595 12.0827 19 7 5.0688 -1.8056 11.2657 20 6 3.4576 -2.7334 7.8947 21 6 2.1658 -2.6806 2.5510 22 9 1.9511 -3.9976 2.7627 23 6 1.6872 -2.0665 1.4062 24 1 -0.3933 0.4417 -0.7652 25 1 1.7924 -0.5138 -0.8899 26 1 1.5880 2.4585 -1.2242 27 1 1.5615 2.4679 1.2084 28 1 2.8292 1.0344 2.0608 29 1 3.2057 -3.4695 4.7923 30 1 3.4675 -0.9255 5.9907 31 1 4.9888 -1.3087 5.1500 32 1 6.4601 -2.2140 7.7665 33 1 5.2776 -0.8376 7.8437 34 1 2.5085 -0.8138 9.4862 35 1 2.6722 0.2772 11.8684 36 1 4.8378 -0.7068 13.0753 37 1 2.7877 -1.8748 7.9404 38 1 2.9277 -3.6859 7.9023 39 1 1.1372 -2.6291 0.6663 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567482_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:57:58 Heat of formation + Delta-G solvation = 84.307910 kcal Electronic energy + Delta-G solvation = -23858.705613 eV Core-core repulsion = 20106.667251 eV Total energy + Delta-G solvation = -3752.038363 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.95357 -42.28907 -41.38292 -40.04303 -38.10260 -36.56415 -33.45146 -32.84713 -31.63486 -30.97196 -28.69225 -26.92214 -26.22167 -25.22763 -23.90332 -22.75282 -22.13779 -21.64790 -20.30970 -19.28944 -18.63551 -18.38137 -18.16325 -18.04675 -17.03748 -16.82494 -16.40272 -16.02741 -15.71103 -15.61051 -15.39306 -15.23449 -15.02835 -14.65738 -14.26927 -14.21543 -14.02906 -13.88340 -13.81632 -13.39311 -13.26029 -12.95036 -12.61464 -12.28660 -12.08286 -11.81085 -11.72207 -11.50553 -11.22565 -10.74611 -10.73537 -10.42092 -10.37979 -9.52761 -8.76113 -4.89446 -0.09409 0.10960 0.93804 1.31028 1.58293 1.62882 1.91722 1.97249 1.98132 2.50703 3.01740 3.16530 3.22367 3.33516 3.40824 3.57308 3.66165 3.68139 3.86149 3.88122 4.02773 4.10743 4.17548 4.32140 4.36726 4.47023 4.52159 4.58375 4.69426 4.71566 4.72212 4.78901 4.85075 4.89733 4.97429 5.00264 5.12732 5.24847 5.37437 5.73573 5.94569 6.14031 6.18582 6.61762 6.75667 6.95507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.071 4.071 3 Si 0.760 3.240 4 C -0.168 4.168 5 C 0.145 3.855 6 N -0.527 5.527 7 C 0.381 3.619 8 N -0.712 5.712 9 C 0.150 3.850 10 C -0.104 4.104 11 H 0.120 0.880 12 C -0.130 4.130 13 C 0.124 3.876 14 H 0.122 0.878 15 N -0.367 5.367 16 C 0.052 3.948 17 C -0.290 4.290 18 C 0.032 3.968 19 N -0.342 5.342 20 C -0.131 4.131 21 C -0.036 4.036 22 F -0.139 7.139 23 C -0.042 4.042 24 H 0.397 0.603 25 H 0.100 0.900 26 H -0.283 1.283 27 H -0.293 1.293 28 H 0.178 0.822 29 H 0.418 0.582 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.197 0.803 35 H 0.163 0.837 36 H 0.199 0.801 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 0.786 -4.277 4.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.180 4.180 3 Si 0.664 3.336 4 C -0.173 4.173 5 C -0.012 4.012 6 N -0.245 5.245 7 C 0.142 3.858 8 N -0.346 5.346 9 C 0.027 3.973 10 C -0.123 4.123 11 H 0.138 0.862 12 C -0.169 4.169 13 C 0.023 3.977 14 H 0.140 0.860 15 N -0.149 5.149 16 C -0.094 4.094 17 C -0.319 4.319 18 C -0.153 4.153 19 N -0.164 5.164 20 C -0.170 4.170 21 C -0.062 4.062 22 F -0.118 7.118 23 C -0.068 4.068 24 H 0.247 0.753 25 H 0.118 0.882 26 H -0.210 1.210 27 H -0.220 1.220 28 H 0.195 0.805 29 H 0.256 0.744 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.214 0.786 35 H 0.180 0.820 36 H 0.216 0.784 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.064 0.929 -3.212 3.930 hybrid contribution -2.435 -0.635 -0.687 2.609 sum -0.372 0.294 -3.899 3.928 Atomic orbital electron populations 1.86548 1.18546 1.80716 1.51209 1.24762 0.84022 1.11603 0.97591 0.94230 0.90266 0.72095 0.76978 1.20013 1.04433 0.93652 0.99164 1.22638 0.91591 1.00084 0.86888 1.67361 1.25993 1.07480 1.23650 1.18568 0.90729 0.89011 0.87500 1.44570 1.59211 1.12479 1.18303 1.21239 0.95670 0.93095 0.87312 1.22516 0.96705 1.00627 0.92497 0.86216 1.23376 1.00094 1.00565 0.92845 1.23141 0.99891 0.94898 0.79796 0.85994 1.48963 1.19798 1.33662 1.12441 1.22957 0.93420 0.93446 0.99611 1.21878 1.03392 1.10248 0.96398 1.24361 0.95174 0.95240 1.00531 1.77299 1.20854 1.24073 0.94152 1.23551 0.96071 1.04925 0.92409 1.18095 1.09577 0.79488 0.99031 1.91470 1.93798 1.31512 1.94990 1.21457 0.95201 0.94911 0.95252 0.75266 0.88186 1.21018 1.22018 0.80532 0.74373 0.91738 0.91356 0.89535 0.89483 0.78576 0.81961 0.78398 0.88312 0.88655 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.07 12.82 -148.98 -1.91 -1.84 16 2 C -0.07 0.22 2.81 71.24 0.20 0.42 16 3 Si 0.76 -3.41 29.88 68.60 2.05 -1.36 16 4 C -0.17 -0.12 5.39 -19.76 -0.11 -0.23 16 5 C 0.14 0.17 9.84 84.61 0.83 1.01 16 6 N -0.53 -1.98 9.57 -193.03 -1.85 -3.82 16 7 C 0.38 1.14 7.49 133.08 1.00 2.14 16 8 N -0.71 1.25 5.71 -344.81 -1.97 -0.72 16 9 C 0.15 -0.61 5.53 86.38 0.48 -0.14 16 10 C -0.10 0.78 3.76 -10.26 -0.04 0.74 16 11 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 12 C -0.13 0.56 7.44 31.12 0.23 0.79 16 13 C 0.12 -0.25 5.04 45.51 0.23 -0.02 16 14 H 0.12 -0.26 8.14 -2.38 -0.02 -0.28 16 15 N -0.37 -1.50 3.81 -324.98 -1.24 -2.73 16 16 C 0.05 0.08 10.69 83.54 0.89 0.97 16 17 C -0.29 -0.89 10.80 21.99 0.24 -0.65 16 18 C 0.03 0.18 12.03 85.24 1.03 1.21 16 19 N -0.34 -3.26 12.57 -57.02 -0.72 -3.98 16 20 C -0.13 0.89 6.98 31.12 0.22 1.10 16 21 C -0.04 -0.13 7.35 22.58 0.17 0.04 16 22 F -0.14 -0.59 16.65 44.97 0.75 0.16 16 23 C -0.04 -0.09 9.82 22.48 0.22 0.13 16 24 H 0.40 -3.21 8.74 -74.05 -0.65 -3.86 16 25 H 0.10 -0.75 7.96 -2.39 -0.02 -0.76 16 26 H -0.28 0.06 7.11 99.48 0.71 0.77 16 27 H -0.29 -0.71 7.05 99.48 0.70 -0.01 16 28 H 0.18 -0.54 4.87 -2.91 -0.01 -0.55 16 29 H 0.42 -1.82 7.94 -92.71 -0.74 -2.56 16 30 H 0.06 -0.16 7.84 -2.39 -0.02 -0.18 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.09 -0.21 8.10 -2.39 -0.02 -0.23 16 34 H 0.20 -1.00 6.69 -2.91 -0.02 -1.02 16 35 H 0.16 -0.18 8.06 -2.91 -0.02 -0.20 16 36 H 0.20 0.05 8.06 -2.91 -0.02 0.02 16 37 H 0.10 -0.69 6.07 -2.39 -0.01 -0.70 16 38 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.16 -0.07 8.06 -2.91 -0.02 -0.10 16 Total: 0.00 -19.43 333.21 0.45 -18.98 By element: Atomic # 1 Polarization: -11.96 SS G_CDS: -0.25 Total: -12.21 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.58 Total: 7.52 kcal Atomic # 7 Polarization: -5.48 SS G_CDS: -5.77 Total: -11.25 kcal Atomic # 8 Polarization: 0.07 SS G_CDS: -1.91 Total: -1.84 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.75 Total: 0.16 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.05 Total: -1.36 kcal Total: -19.43 0.45 -18.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567482_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.287 kcal (2) G-P(sol) polarization free energy of solvation -19.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds