Wall clock time and date at job start Mon Mar 8 2021 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86292 * 109.47378 * 2 1 4 4 C 1.50709 * 109.47178 * 120.00132 * 2 1 3 5 5 C 1.38603 * 120.72338 * 64.99516 * 4 2 1 6 6 N 1.32270 * 119.20103 * 180.02562 * 5 4 2 7 7 C 1.32501 * 120.73687 * 359.97438 * 6 5 4 8 8 N 1.38404 * 119.21275 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99573 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46684 * 180.02562 * 9 8 7 11 11 H 1.08995 * 112.85250 * 314.66863 * 10 9 8 12 12 C 1.53785 * 113.61324 * 85.87045 * 10 9 8 13 13 C 1.53955 * 87.02112 * 139.94978 * 12 10 9 14 14 H 1.08995 * 113.61428 * 89.20008 * 13 12 10 15 15 N 1.46496 * 113.66349 * 220.06729 * 13 12 10 16 16 C 1.36886 * 126.39606 * 217.27432 * 15 13 12 17 17 C 1.34675 * 106.81765 * 179.84255 * 16 15 13 18 18 N 1.34124 * 108.01880 * 0.41929 * 17 16 15 19 19 C 1.30505 * 109.25906 * 359.73136 * 18 17 16 20 20 C 1.53780 * 87.10938 * 334.63432 * 13 12 10 21 21 N 1.32487 * 121.56643 * 0.27797 * 7 6 5 22 22 C 1.32282 * 120.73942 * 359.44509 * 21 7 6 23 23 H 0.96708 * 113.99568 * 299.99937 * 1 2 3 24 24 H 1.08997 * 109.47042 * 239.99493 * 2 1 3 25 25 H 1.48503 * 110.00234 * 299.99869 * 3 2 1 26 26 H 1.48497 * 110.00468 * 61.32056 * 3 2 1 27 27 H 1.08001 * 120.39498 * 0.04474 * 5 4 2 28 28 H 0.96995 * 120.00318 * 0.27899 * 8 7 6 29 29 H 1.09000 * 109.47212 * 300.00356 * 9 8 7 30 30 H 1.09001 * 109.46577 * 60.00430 * 9 8 7 31 31 H 1.09002 * 113.61227 * 254.52486 * 12 10 9 32 32 H 1.08998 * 113.61561 * 25.42334 * 12 10 9 33 33 H 1.08001 * 126.59006 * 359.97438 * 16 15 13 34 34 H 1.07991 * 125.99015 * 180.11513 * 17 16 15 35 35 H 1.07998 * 125.65239 * 179.97438 * 19 18 17 36 36 H 1.09004 * 113.61514 * 270.81519 * 20 13 12 37 37 H 1.08998 * 113.69255 * 139.92502 * 20 13 12 38 38 H 1.08002 * 120.39989 * 180.29699 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.6926 -2.0634 1.4141 6 7 2.1469 -2.6565 2.5056 7 6 2.8233 -1.9723 3.4166 8 7 3.2837 -2.6246 4.5471 9 6 4.0331 -1.8845 5.5656 10 6 4.4226 -2.8327 6.7014 11 1 3.6004 -3.4744 7.0179 12 6 5.7347 -3.5932 6.4464 13 6 6.0618 -3.3657 7.9335 14 1 5.6894 -4.1537 8.5879 15 7 7.4673 -3.0362 8.1826 16 6 8.2214 -3.4474 9.2485 17 6 9.4501 -2.9216 9.0825 18 7 9.4437 -2.2013 7.9511 19 6 8.2594 -2.2654 7.4066 20 6 5.1429 -2.1345 7.8670 21 7 3.0643 -0.6774 3.2738 22 6 2.6425 -0.0252 2.2030 23 1 -0.3933 0.4417 0.7651 24 1 1.7923 -0.5139 -0.8899 25 1 1.5616 2.4679 -1.2085 26 1 1.5880 2.4585 1.2242 27 1 1.1424 -2.6264 0.6747 28 1 3.1135 -3.5723 4.6634 29 1 4.9339 -1.4632 5.1194 30 1 3.4124 -1.0800 5.9601 31 1 5.5882 -4.6415 6.1860 32 1 6.4129 -3.0779 5.7662 33 1 7.8944 -4.0747 10.0645 34 1 10.2914 -3.0526 9.7467 35 1 7.9619 -1.7818 6.4880 36 1 5.6591 -1.2195 7.5760 37 1 4.5189 -2.0054 8.7513 38 1 2.8462 1.0294 2.0899 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567488_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:46 Heat of formation + Delta-G solvation = 126.107730 kcal Electronic energy + Delta-G solvation = -21654.927665 eV Core-core repulsion = 18308.729943 eV Total energy + Delta-G solvation = -3346.197722 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.09735 -42.11249 -40.37582 -38.30841 -36.72110 -34.73795 -33.74351 -32.47211 -30.31270 -29.00977 -27.18819 -26.40136 -25.91725 -24.41394 -23.11092 -22.47103 -21.87114 -20.53188 -19.45856 -18.81416 -18.49413 -18.06218 -17.09250 -16.64645 -16.34157 -16.15101 -16.03723 -15.86908 -15.60044 -15.23053 -14.86981 -14.67848 -14.57713 -14.42459 -14.02090 -13.89601 -13.60718 -13.37594 -13.16699 -12.45543 -12.26201 -12.00089 -11.98267 -11.88903 -11.76660 -11.35412 -10.85055 -10.75962 -10.48419 -10.06481 -9.40957 -9.18054 -5.05413 0.02360 0.12596 1.11106 1.18736 1.48762 1.66907 1.81970 1.88718 2.32442 2.78370 2.98023 3.04123 3.11122 3.28729 3.34024 3.36177 3.58056 3.67140 3.73828 3.75641 3.82732 3.96869 3.99754 4.15260 4.24836 4.32805 4.40565 4.50380 4.51761 4.58008 4.62548 4.67495 4.70639 4.81870 4.95607 5.15595 5.36939 5.69773 5.85929 5.94028 6.25980 6.30867 6.32871 7.20662 7.24235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.053 4.053 3 Si 0.680 3.320 4 C -0.291 4.291 5 C 0.224 3.776 6 N -0.569 5.569 7 C 0.566 3.434 8 N -0.696 5.696 9 C 0.149 3.851 10 C -0.122 4.122 11 H 0.106 0.894 12 C -0.139 4.139 13 C 0.108 3.892 14 H 0.125 0.875 15 N -0.449 5.449 16 C -0.057 4.057 17 C -0.030 4.030 18 N -0.494 5.494 19 C 0.182 3.818 20 C -0.133 4.133 21 N -0.563 5.563 22 C 0.198 3.802 23 H 0.376 0.624 24 H 0.120 0.880 25 H -0.253 1.253 26 H -0.258 1.258 27 H 0.171 0.829 28 H 0.415 0.585 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.200 0.800 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -0.914 0.973 2.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.165 4.165 3 Si 0.581 3.419 4 C -0.300 4.300 5 C 0.055 3.945 6 N -0.291 5.291 7 C 0.210 3.790 8 N -0.333 5.333 9 C 0.025 3.975 10 C -0.141 4.141 11 H 0.124 0.876 12 C -0.177 4.177 13 C 0.004 3.996 14 H 0.142 0.858 15 N -0.132 5.132 16 C -0.190 4.190 17 C -0.178 4.178 18 N -0.211 5.211 19 C -0.100 4.100 20 C -0.172 4.172 21 N -0.285 5.285 22 C 0.030 3.970 23 H 0.223 0.777 24 H 0.138 0.862 25 H -0.177 1.177 26 H -0.182 1.182 27 H 0.188 0.812 28 H 0.253 0.747 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.190 0.810 34 H 0.187 0.813 35 H 0.217 0.783 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.876 -0.369 1.103 1.456 hybrid contribution -2.177 -0.651 0.233 2.284 sum -3.053 -1.020 1.336 3.485 Atomic orbital electron populations 1.86618 1.17756 1.79867 1.49329 1.24676 0.83764 1.10581 0.97446 0.95161 0.91499 0.74533 0.80754 1.21656 1.09031 0.97729 1.01547 1.22848 0.89104 0.90980 0.91521 1.67984 1.16557 1.40062 1.04472 1.19382 0.87175 0.85553 0.86938 1.44100 1.58938 1.12118 1.18100 1.21293 0.96182 0.93679 0.86360 1.22650 0.97383 0.98296 0.95804 0.87587 1.23579 0.96918 1.02491 0.94757 1.23086 0.78203 0.99433 0.98835 0.85756 1.45578 1.10567 1.37899 1.19171 1.22790 0.93411 1.07665 0.95126 1.22367 0.97117 1.00993 0.97290 1.70339 1.20012 1.21446 1.09350 1.24854 0.86750 0.98844 0.99590 1.23423 0.97392 0.97587 0.98809 1.67935 1.27184 1.08215 1.25168 1.22849 0.88092 0.99471 0.86547 0.77666 0.86185 1.17731 1.18242 0.81240 0.74734 0.90913 0.90854 0.89727 0.88556 0.80956 0.81334 0.78299 0.88445 0.89581 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.05 12.85 -35.23 -0.45 -0.40 16 2 C -0.05 0.09 2.83 36.01 0.10 0.19 16 3 Si 0.68 -1.49 29.95 -169.99 -5.09 -6.58 16 4 C -0.29 0.18 5.36 -104.35 -0.56 -0.38 16 5 C 0.22 0.10 10.99 -17.23 -0.19 -0.09 16 6 N -0.57 -1.15 10.46 -13.93 -0.15 -1.29 16 7 C 0.57 0.88 8.42 -322.81 -2.72 -1.83 16 8 N -0.70 0.74 5.70 -62.30 -0.36 0.39 16 9 C 0.15 -0.41 5.47 -4.04 -0.02 -0.43 16 10 C -0.12 0.58 3.75 -89.80 -0.34 0.24 16 11 H 0.11 -0.57 8.14 -51.93 -0.42 -0.99 16 12 C -0.14 0.58 7.20 -25.83 -0.19 0.39 16 13 C 0.11 -0.37 4.64 -67.03 -0.31 -0.68 16 14 H 0.12 -0.58 8.14 -51.93 -0.42 -1.00 16 15 N -0.45 0.17 2.94 -110.50 -0.33 -0.15 16 16 C -0.06 -0.03 11.58 -16.56 -0.19 -0.22 16 17 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 18 N -0.49 -2.18 11.25 -14.67 -0.17 -2.34 16 19 C 0.18 0.23 11.37 -90.37 -1.03 -0.80 16 20 C -0.13 0.56 7.32 -25.92 -0.19 0.37 16 21 N -0.56 -0.84 9.59 -13.93 -0.13 -0.97 16 22 C 0.20 -0.04 9.92 -17.22 -0.17 -0.21 16 23 H 0.38 -1.00 8.70 45.56 0.40 -0.60 16 24 H 0.12 -0.31 7.96 -51.93 -0.41 -0.72 16 25 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 26 H -0.26 0.10 7.02 56.52 0.40 0.50 16 27 H 0.17 -0.23 8.06 -52.49 -0.42 -0.65 16 28 H 0.42 -0.91 8.59 -40.82 -0.35 -1.27 16 29 H 0.07 -0.16 7.87 -51.93 -0.41 -0.57 16 30 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 32 H 0.10 -0.34 6.71 -51.93 -0.35 -0.69 16 33 H 0.17 -0.41 8.06 -52.49 -0.42 -0.83 16 34 H 0.17 0.13 8.06 -52.49 -0.42 -0.30 16 35 H 0.20 -0.32 7.44 -52.49 -0.39 -0.71 16 36 H 0.10 -0.34 7.86 -51.93 -0.41 -0.75 16 37 H 0.09 -0.38 8.14 -51.93 -0.42 -0.80 16 38 H 0.17 -0.40 5.01 -52.49 -0.26 -0.66 16 LS Contribution 322.64 15.07 4.86 4.86 Total: 0.00 -8.95 322.64 -12.59 -21.54 By element: Atomic # 1 Polarization: -6.53 SS G_CDS: -4.77 Total: -11.30 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -6.01 Total: -3.75 kcal Atomic # 7 Polarization: -3.25 SS G_CDS: -1.13 Total: -4.37 kcal Atomic # 8 Polarization: 0.05 SS G_CDS: -0.45 Total: -0.40 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: -5.09 Total: -6.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -8.95 -12.59 -21.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567488_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.651 kcal (2) G-P(sol) polarization free energy of solvation -8.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds