Wall clock time and date at job start Mon Mar 8 2021 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86292 * 109.47378 * 2 1 4 4 C 1.50709 * 109.47178 * 120.00132 * 2 1 3 5 5 C 1.38603 * 120.72338 * 64.99516 * 4 2 1 6 6 N 1.32270 * 119.20103 * 180.02562 * 5 4 2 7 7 C 1.32501 * 120.73687 * 359.97438 * 6 5 4 8 8 N 1.38404 * 119.21275 * 179.97438 * 7 6 5 9 9 C 1.46506 * 119.99573 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46684 * 180.02562 * 9 8 7 11 11 H 1.08995 * 112.85250 * 314.66863 * 10 9 8 12 12 C 1.53785 * 113.61324 * 85.87045 * 10 9 8 13 13 C 1.53955 * 87.02112 * 139.94978 * 12 10 9 14 14 H 1.08995 * 113.61428 * 89.20008 * 13 12 10 15 15 N 1.46496 * 113.66349 * 220.06729 * 13 12 10 16 16 C 1.36886 * 126.39606 * 217.27432 * 15 13 12 17 17 C 1.34675 * 106.81765 * 179.84255 * 16 15 13 18 18 N 1.34124 * 108.01880 * 0.41929 * 17 16 15 19 19 C 1.30505 * 109.25906 * 359.73136 * 18 17 16 20 20 C 1.53780 * 87.10938 * 334.63432 * 13 12 10 21 21 N 1.32487 * 121.56643 * 0.27797 * 7 6 5 22 22 C 1.32282 * 120.73942 * 359.44509 * 21 7 6 23 23 H 0.96708 * 113.99568 * 299.99937 * 1 2 3 24 24 H 1.08997 * 109.47042 * 239.99493 * 2 1 3 25 25 H 1.48503 * 110.00234 * 299.99869 * 3 2 1 26 26 H 1.48497 * 110.00468 * 61.32056 * 3 2 1 27 27 H 1.08001 * 120.39498 * 0.04474 * 5 4 2 28 28 H 0.96995 * 120.00318 * 0.27899 * 8 7 6 29 29 H 1.09000 * 109.47212 * 300.00356 * 9 8 7 30 30 H 1.09001 * 109.46577 * 60.00430 * 9 8 7 31 31 H 1.09002 * 113.61227 * 254.52486 * 12 10 9 32 32 H 1.08998 * 113.61561 * 25.42334 * 12 10 9 33 33 H 1.08001 * 126.59006 * 359.97438 * 16 15 13 34 34 H 1.07991 * 125.99015 * 180.11513 * 17 16 15 35 35 H 1.07998 * 125.65239 * 179.97438 * 19 18 17 36 36 H 1.09004 * 113.61514 * 270.81519 * 20 13 12 37 37 H 1.08998 * 113.69255 * 139.92502 * 20 13 12 38 38 H 1.08002 * 120.39989 * 180.29699 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.6926 -2.0634 1.4141 6 7 2.1469 -2.6565 2.5056 7 6 2.8233 -1.9723 3.4166 8 7 3.2837 -2.6246 4.5471 9 6 4.0331 -1.8845 5.5656 10 6 4.4226 -2.8327 6.7014 11 1 3.6004 -3.4744 7.0179 12 6 5.7347 -3.5932 6.4464 13 6 6.0618 -3.3657 7.9335 14 1 5.6894 -4.1537 8.5879 15 7 7.4673 -3.0362 8.1826 16 6 8.2214 -3.4474 9.2485 17 6 9.4501 -2.9216 9.0825 18 7 9.4437 -2.2013 7.9511 19 6 8.2594 -2.2654 7.4066 20 6 5.1429 -2.1345 7.8670 21 7 3.0643 -0.6774 3.2738 22 6 2.6425 -0.0252 2.2030 23 1 -0.3933 0.4417 0.7651 24 1 1.7923 -0.5139 -0.8899 25 1 1.5616 2.4679 -1.2085 26 1 1.5880 2.4585 1.2242 27 1 1.1424 -2.6264 0.6747 28 1 3.1135 -3.5723 4.6634 29 1 4.9339 -1.4632 5.1194 30 1 3.4124 -1.0800 5.9601 31 1 5.5882 -4.6415 6.1860 32 1 6.4129 -3.0779 5.7662 33 1 7.8944 -4.0747 10.0645 34 1 10.2914 -3.0526 9.7467 35 1 7.9619 -1.7818 6.4880 36 1 5.6591 -1.2195 7.5760 37 1 4.5189 -2.0054 8.7513 38 1 2.8462 1.0294 2.0899 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567488_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:45 Heat of formation + Delta-G solvation = 128.576721 kcal Electronic energy + Delta-G solvation = -21654.820602 eV Core-core repulsion = 18308.729943 eV Total energy + Delta-G solvation = -3346.090658 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07776 -42.09030 -40.15168 -38.23965 -36.62404 -34.74323 -33.71083 -32.42752 -30.33759 -28.87472 -26.87447 -26.30358 -25.87922 -24.30260 -23.06639 -22.44544 -21.80158 -20.35582 -19.35916 -18.75399 -18.39592 -18.00481 -16.84889 -16.54869 -16.26525 -16.09923 -15.94772 -15.79416 -15.51508 -15.15963 -14.84942 -14.60354 -14.48140 -14.40788 -14.01388 -13.59534 -13.39267 -13.23991 -13.08483 -12.29435 -12.14835 -11.91935 -11.78523 -11.73057 -11.67270 -11.22981 -10.94446 -10.69929 -10.46978 -10.06367 -9.45300 -9.11105 -4.90677 0.04564 0.13335 1.11607 1.31968 1.59793 1.78065 1.93025 1.98133 2.21783 2.78668 3.14740 3.27655 3.35771 3.44244 3.62978 3.64017 3.67613 3.73461 3.83477 3.86452 3.99346 4.13327 4.22117 4.30884 4.47333 4.60483 4.64052 4.64802 4.71703 4.74984 4.75848 4.82167 4.92655 4.97563 5.17909 5.26175 5.44295 5.74888 5.83911 6.03426 6.30325 6.39406 6.49159 7.15339 7.26775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.056 4.056 3 Si 0.758 3.242 4 C -0.284 4.284 5 C 0.214 3.786 6 N -0.590 5.590 7 C 0.550 3.450 8 N -0.690 5.690 9 C 0.152 3.848 10 C -0.106 4.106 11 H 0.120 0.880 12 C -0.136 4.136 13 C 0.103 3.897 14 H 0.143 0.857 15 N -0.445 5.445 16 C -0.050 4.050 17 C -0.065 4.065 18 N -0.543 5.543 19 C 0.175 3.825 20 C -0.129 4.129 21 N -0.579 5.579 22 C 0.192 3.808 23 H 0.385 0.615 24 H 0.132 0.868 25 H -0.300 1.300 26 H -0.279 1.279 27 H 0.183 0.817 28 H 0.420 0.580 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.201 0.799 34 H 0.174 0.826 35 H 0.219 0.781 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -1.472 1.279 3.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.166 4.166 3 Si 0.663 3.337 4 C -0.293 4.293 5 C 0.046 3.954 6 N -0.312 5.312 7 C 0.193 3.807 8 N -0.327 5.327 9 C 0.029 3.971 10 C -0.125 4.125 11 H 0.138 0.862 12 C -0.174 4.174 13 C 0.001 3.999 14 H 0.161 0.839 15 N -0.127 5.127 16 C -0.183 4.183 17 C -0.212 4.212 18 N -0.262 5.262 19 C -0.107 4.107 20 C -0.168 4.168 21 N -0.302 5.302 22 C 0.025 3.975 23 H 0.234 0.766 24 H 0.149 0.851 25 H -0.228 1.228 26 H -0.205 1.205 27 H 0.200 0.800 28 H 0.258 0.742 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.235 0.765 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.661 -0.953 1.427 2.389 hybrid contribution -1.988 -0.448 0.104 2.041 sum -3.649 -1.401 1.531 4.198 Atomic orbital electron populations 1.86593 1.18529 1.80234 1.50124 1.24841 0.83187 1.11133 0.97486 0.94245 0.90255 0.72302 0.76878 1.21675 1.08607 0.97346 1.01641 1.23156 0.89105 0.91657 0.91503 1.68008 1.17389 1.40664 1.05181 1.19683 0.87537 0.85869 0.87600 1.44205 1.58485 1.12380 1.17622 1.21298 0.95504 0.93882 0.86453 1.22540 0.97474 0.97761 0.94716 0.86189 1.23553 0.96897 1.02807 0.94182 1.23401 0.76554 1.00295 0.99631 0.83912 1.45760 1.11504 1.36947 1.18454 1.23210 0.92730 1.06819 0.95553 1.22660 0.98619 1.02295 0.97649 1.70264 1.22028 1.23177 1.10719 1.25186 0.86407 0.98944 1.00167 1.23386 0.97178 0.97032 0.99198 1.67973 1.27894 1.08376 1.25949 1.23199 0.87783 1.00273 0.86235 0.76572 0.85077 1.22825 1.20515 0.80030 0.74192 0.91511 0.91652 0.89160 0.89246 0.78180 0.80897 0.76463 0.89226 0.88841 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.24 12.85 -148.98 -1.91 -1.67 16 2 C -0.06 0.21 2.83 71.24 0.20 0.41 16 3 Si 0.76 -3.44 29.95 68.60 2.05 -1.39 16 4 C -0.28 0.43 5.36 -19.69 -0.11 0.32 16 5 C 0.21 0.19 10.99 84.71 0.93 1.12 16 6 N -0.59 -2.52 10.46 -197.99 -2.07 -4.59 16 7 C 0.55 1.84 8.42 261.49 2.20 4.04 16 8 N -0.69 1.52 5.70 -351.03 -2.00 -0.48 16 9 C 0.15 -0.87 5.47 86.38 0.47 -0.40 16 10 C -0.11 1.11 3.75 -10.27 -0.04 1.07 16 11 H 0.12 -1.52 8.14 -2.39 -0.02 -1.54 16 12 C -0.14 1.26 7.20 31.18 0.22 1.49 16 13 C 0.10 -0.85 4.64 45.58 0.21 -0.64 16 14 H 0.14 -1.66 8.14 -2.39 -0.02 -1.68 16 15 N -0.44 0.53 2.94 -503.50 -1.48 -0.95 16 16 C -0.05 -0.03 11.58 83.09 0.96 0.94 16 17 C -0.07 -0.41 11.87 83.53 0.99 0.58 16 18 N -0.54 -5.54 11.25 -200.31 -2.25 -7.80 16 19 C 0.18 0.55 11.37 180.26 2.05 2.60 16 20 C -0.13 1.21 7.32 31.12 0.23 1.44 16 21 N -0.58 -1.82 9.59 -197.98 -1.90 -3.72 16 22 C 0.19 -0.11 9.92 84.71 0.84 0.73 16 23 H 0.39 -2.10 8.70 -74.05 -0.64 -2.75 16 24 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 25 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 26 H -0.28 0.29 7.02 99.48 0.70 0.99 16 27 H 0.18 -0.50 8.06 -2.91 -0.02 -0.52 16 28 H 0.42 -1.99 8.59 -92.71 -0.80 -2.78 16 29 H 0.07 -0.28 7.87 -2.39 -0.02 -0.30 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.09 -0.66 6.71 -2.39 -0.02 -0.67 16 33 H 0.20 -1.25 8.06 -2.91 -0.02 -1.27 16 34 H 0.17 0.55 8.06 -2.92 -0.02 0.52 16 35 H 0.22 -0.58 7.44 -2.91 -0.02 -0.60 16 36 H 0.09 -0.65 7.86 -2.38 -0.02 -0.67 16 37 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H 0.18 -0.99 5.01 -2.91 -0.01 -1.00 16 Total: 0.00 -21.79 322.64 -0.71 -22.49 By element: Atomic # 1 Polarization: -15.29 SS G_CDS: -0.31 Total: -15.60 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 9.17 Total: 13.70 kcal Atomic # 7 Polarization: -7.83 SS G_CDS: -9.71 Total: -17.54 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: -1.91 Total: -1.67 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.05 Total: -1.39 kcal Total: -21.79 -0.71 -22.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567488_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.067 kcal (2) G-P(sol) polarization free energy of solvation -21.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds