Wall clock time and date at job start Mon Mar 8 2021 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.33323 * 125.95393 * 64.71553 * 4 2 1 6 6 N 1.32117 * 114.57756 * 179.82473 * 5 4 2 7 7 C 1.29685 * 116.86942 * 0.48071 * 6 5 4 8 8 N 1.38610 * 124.94912 * 179.73458 * 7 6 5 9 9 C 1.46498 * 120.00381 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.47563 * 179.97438 * 9 8 7 11 11 H 1.08998 * 112.84723 * 43.79701 * 10 9 8 12 12 C 1.53780 * 113.61382 * 174.99952 * 10 9 8 13 13 C 1.53794 * 87.07950 * 139.97992 * 12 10 9 14 14 H 1.08993 * 113.61078 * 89.11585 * 13 12 10 15 15 N 1.46504 * 113.61095 * 220.01703 * 13 12 10 16 16 C 1.36878 * 126.39325 * 239.99588 * 15 13 12 17 17 C 1.34670 * 106.81631 * 180.02562 * 16 15 13 18 18 N 1.34132 * 108.01604 * 359.97438 * 17 16 15 19 19 C 1.30498 * 109.25825 * 359.72898 * 18 17 16 20 20 C 1.53784 * 113.60961 * 272.49836 * 10 9 8 21 21 S 1.70963 * 110.10138 * 359.73751 * 7 6 5 22 22 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 23 23 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 24 24 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 25 25 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 26 26 H 1.08001 * 122.70945 * 0.02562 * 5 4 2 27 27 H 0.96997 * 120.00103 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.47126 * 300.00113 * 9 8 7 29 29 H 1.09001 * 109.47501 * 59.99239 * 9 8 7 30 30 H 1.08996 * 113.61303 * 254.52223 * 12 10 9 31 31 H 1.08995 * 113.61959 * 25.34941 * 12 10 9 32 32 H 1.07995 * 126.59367 * 0.04580 * 16 15 13 33 33 H 1.07997 * 125.99114 * 180.02562 * 17 16 15 34 34 H 1.07999 * 125.64765 * 180.28546 * 19 18 17 35 35 H 1.09000 * 113.61963 * 334.55873 * 20 10 9 36 36 H 1.09002 * 113.61609 * 105.47120 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7577 -2.0013 1.5148 6 7 2.2975 -2.3900 2.6563 7 6 2.9106 -1.4843 3.3532 8 7 3.5298 -1.7054 4.5734 9 6 3.5218 -3.0447 5.1670 10 6 4.2681 -3.0154 6.5022 11 1 4.0097 -2.1501 7.1126 12 6 4.2134 -4.3479 7.2679 13 6 5.6862 -4.1051 7.6383 14 1 5.8167 -3.5376 8.5597 15 7 6.5101 -5.3157 7.5925 16 6 7.2051 -5.8650 8.6359 17 6 7.8215 -6.9630 8.1584 18 7 7.5108 -7.0811 6.8589 19 6 6.7206 -6.1012 6.5145 20 6 5.7825 -3.2458 6.3666 21 16 2.8438 0.0221 2.5475 22 1 -0.3934 0.4416 -0.7651 23 1 1.7924 -0.5138 -0.8899 24 1 1.5613 2.4680 1.2084 25 1 3.5344 1.7705 -0.0322 26 1 1.2220 -2.6755 0.8630 27 1 3.9690 -0.9734 5.0341 28 1 2.4924 -3.3626 5.3326 29 1 4.0138 -3.7445 4.4914 30 1 3.5395 -4.3320 8.1244 31 1 4.0607 -5.2149 6.6252 32 1 7.2501 -5.4903 9.6478 33 1 8.4543 -7.6317 8.7229 34 1 6.3064 -5.9431 5.5297 35 1 6.0603 -3.8117 5.4773 36 1 6.3753 -2.3401 6.4955 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567488_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:53 Heat of formation + Delta-G solvation = 118.802220 kcal Electronic energy + Delta-G solvation = -20093.539049 eV Core-core repulsion = 16901.602694 eV Total energy + Delta-G solvation = -3191.936355 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.11500 -40.86020 -40.23588 -37.93211 -36.62119 -33.61432 -31.65427 -30.33286 -29.18197 -27.21301 -26.40171 -25.04861 -23.95397 -22.52372 -21.95805 -20.79336 -20.46409 -19.66879 -18.51730 -18.38915 -17.56635 -17.09587 -16.47175 -16.21583 -16.01930 -15.65979 -15.47448 -15.20952 -14.87250 -14.62905 -14.50993 -14.44915 -14.23401 -13.92398 -13.63783 -13.34059 -12.85951 -12.50286 -12.43541 -12.09572 -12.00858 -11.98714 -11.23821 -10.86188 -10.67213 -10.49904 -10.34269 -10.18468 -9.42178 -8.80087 -5.23576 -0.07972 0.05435 0.62924 1.09852 1.20463 1.55504 1.74712 1.89900 1.99349 2.02885 2.31338 2.96281 3.04198 3.28168 3.31939 3.42507 3.63601 3.74531 3.81243 3.92808 3.95645 3.97417 4.22614 4.30807 4.37460 4.38697 4.49025 4.56098 4.59723 4.65322 4.72568 4.80310 4.91550 5.05567 5.35454 5.72369 5.84782 5.93511 6.24533 6.56785 6.94631 7.19534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.018 4.018 3 Si 0.669 3.331 4 C -0.260 4.260 5 C 0.123 3.877 6 N -0.547 5.547 7 C 0.328 3.672 8 N -0.693 5.693 9 C 0.147 3.853 10 C -0.122 4.122 11 H 0.106 0.894 12 C -0.133 4.133 13 C 0.109 3.891 14 H 0.125 0.875 15 N -0.450 5.450 16 C -0.057 4.057 17 C -0.030 4.030 18 N -0.493 5.493 19 C 0.182 3.818 20 C -0.140 4.140 21 S 0.070 5.930 22 H 0.383 0.617 23 H 0.083 0.917 24 H -0.239 1.239 25 H -0.243 1.243 26 H 0.179 0.821 27 H 0.414 0.586 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.200 0.800 35 H 0.096 0.904 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 5.277 -0.400 5.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.131 4.131 3 Si 0.568 3.432 4 C -0.382 4.382 5 C -0.027 4.027 6 N -0.272 5.272 7 C -0.042 4.042 8 N -0.333 5.333 9 C 0.021 3.979 10 C -0.141 4.141 11 H 0.124 0.876 12 C -0.172 4.172 13 C 0.005 3.995 14 H 0.143 0.857 15 N -0.132 5.132 16 C -0.190 4.190 17 C -0.177 4.177 18 N -0.211 5.211 19 C -0.100 4.100 20 C -0.178 4.178 21 S 0.318 5.682 22 H 0.231 0.769 23 H 0.100 0.900 24 H -0.162 1.162 25 H -0.167 1.167 26 H 0.196 0.804 27 H 0.251 0.749 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.191 0.809 33 H 0.187 0.813 34 H 0.217 0.783 35 H 0.115 0.885 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.196 5.327 0.580 5.362 hybrid contribution -0.531 -0.142 0.441 0.705 sum -0.727 5.185 1.021 5.334 Atomic orbital electron populations 1.86522 1.17174 1.81760 1.49757 1.23688 0.85470 1.09327 0.94659 0.95118 0.81755 0.78116 0.88196 1.24293 1.14589 0.96855 1.02443 1.21356 0.96266 0.93087 0.92027 1.66467 1.18843 1.33137 1.08773 1.23787 0.95510 0.92983 0.91946 1.43987 1.59583 1.12228 1.17504 1.21371 1.01162 0.83155 0.92181 1.22651 0.95377 0.99401 0.96701 0.87572 1.23429 0.95061 0.97695 1.01033 1.23050 0.90725 0.84747 1.00988 0.85713 1.45574 1.36697 1.21136 1.09830 1.22787 1.02336 0.99412 0.94455 1.22374 1.04658 0.98882 0.91833 1.70342 1.14528 1.22511 1.13731 1.24851 1.01223 0.90021 0.93946 1.23567 0.96358 1.00480 0.97427 1.84107 1.55966 1.12192 1.15948 0.76898 0.89964 1.16236 1.16702 0.80419 0.74852 0.90776 0.90949 0.89526 0.88425 0.80934 0.81303 0.78325 0.88521 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.04 12.86 -35.23 -0.45 -0.49 16 2 C -0.02 0.00 2.98 36.01 0.11 0.11 16 3 Si 0.67 -0.62 31.07 -169.99 -5.28 -5.90 16 4 C -0.26 -0.67 5.76 -36.03 -0.21 -0.87 16 5 C 0.12 0.38 11.24 -19.15 -0.22 0.16 16 6 N -0.55 -2.06 10.14 -15.21 -0.15 -2.22 16 7 C 0.33 0.70 8.09 -87.68 -0.71 -0.01 16 8 N -0.69 0.70 5.71 -62.30 -0.36 0.34 16 9 C 0.15 -0.31 5.79 -4.04 -0.02 -0.33 16 10 C -0.12 0.54 3.75 -89.81 -0.34 0.20 16 11 H 0.11 -0.57 8.14 -51.93 -0.42 -0.99 16 12 C -0.13 0.50 7.32 -25.91 -0.19 0.31 16 13 C 0.11 -0.35 4.64 -67.11 -0.31 -0.66 16 14 H 0.13 -0.56 8.14 -51.93 -0.42 -0.98 16 15 N -0.45 0.03 2.94 -110.59 -0.33 -0.29 16 16 C -0.06 -0.04 11.58 -16.56 -0.19 -0.23 16 17 C -0.03 -0.09 11.87 -17.81 -0.21 -0.30 16 18 N -0.49 -2.35 11.25 -14.67 -0.17 -2.52 16 19 C 0.18 0.31 11.36 -90.38 -1.03 -0.72 16 20 C -0.14 0.55 7.19 -25.91 -0.19 0.36 16 21 S 0.07 0.15 20.59 -107.50 -2.21 -2.06 16 22 H 0.38 -1.96 8.74 45.56 0.40 -1.56 16 23 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 24 H -0.24 -0.53 7.11 56.52 0.40 -0.13 16 25 H -0.24 -0.35 7.11 56.52 0.40 0.05 16 26 H 0.18 0.23 8.06 -52.49 -0.42 -0.19 16 27 H 0.41 -1.31 8.60 -40.82 -0.35 -1.66 16 28 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 29 H 0.07 -0.09 7.84 -51.93 -0.41 -0.50 16 30 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 31 H 0.10 -0.28 7.86 -51.93 -0.41 -0.69 16 32 H 0.17 -0.38 8.06 -52.49 -0.42 -0.80 16 33 H 0.17 0.16 8.06 -52.49 -0.42 -0.26 16 34 H 0.20 -0.21 7.45 -52.49 -0.39 -0.60 16 35 H 0.10 -0.31 6.69 -51.93 -0.35 -0.65 16 36 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 LS Contribution 320.36 15.07 4.83 4.83 Total: 0.00 -9.74 320.36 -12.12 -21.86 By element: Atomic # 1 Polarization: -7.08 SS G_CDS: -4.50 Total: -11.58 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.50 Total: -1.98 kcal Atomic # 7 Polarization: -3.68 SS G_CDS: -1.00 Total: -4.68 kcal Atomic # 8 Polarization: -0.04 SS G_CDS: -0.45 Total: -0.49 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.28 Total: -5.90 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.21 Total: -2.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -9.74 -12.12 -21.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567488_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.666 kcal (2) G-P(sol) polarization free energy of solvation -9.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds