Wall clock time and date at job start Mon Mar 8 2021 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.33323 * 125.95393 * 64.71553 * 4 2 1 6 6 N 1.32117 * 114.57756 * 179.82473 * 5 4 2 7 7 C 1.29685 * 116.86942 * 0.48071 * 6 5 4 8 8 N 1.38610 * 124.94912 * 179.73458 * 7 6 5 9 9 C 1.46498 * 120.00381 * 0.02562 * 8 7 6 10 10 C 1.52997 * 109.47563 * 179.97438 * 9 8 7 11 11 H 1.08998 * 112.84723 * 43.79701 * 10 9 8 12 12 C 1.53780 * 113.61382 * 174.99952 * 10 9 8 13 13 C 1.53794 * 87.07950 * 139.97992 * 12 10 9 14 14 H 1.08993 * 113.61078 * 89.11585 * 13 12 10 15 15 N 1.46504 * 113.61095 * 220.01703 * 13 12 10 16 16 C 1.36878 * 126.39325 * 239.99588 * 15 13 12 17 17 C 1.34670 * 106.81631 * 180.02562 * 16 15 13 18 18 N 1.34132 * 108.01604 * 359.97438 * 17 16 15 19 19 C 1.30498 * 109.25825 * 359.72898 * 18 17 16 20 20 C 1.53784 * 113.60961 * 272.49836 * 10 9 8 21 21 S 1.70963 * 110.10138 * 359.73751 * 7 6 5 22 22 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 23 23 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 24 24 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 25 25 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 26 26 H 1.08001 * 122.70945 * 0.02562 * 5 4 2 27 27 H 0.96997 * 120.00103 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.47126 * 300.00113 * 9 8 7 29 29 H 1.09001 * 109.47501 * 59.99239 * 9 8 7 30 30 H 1.08996 * 113.61303 * 254.52223 * 12 10 9 31 31 H 1.08995 * 113.61959 * 25.34941 * 12 10 9 32 32 H 1.07995 * 126.59367 * 0.04580 * 16 15 13 33 33 H 1.07997 * 125.99114 * 180.02562 * 17 16 15 34 34 H 1.07999 * 125.64765 * 180.28546 * 19 18 17 35 35 H 1.09000 * 113.61963 * 334.55873 * 20 10 9 36 36 H 1.09002 * 113.61609 * 105.47120 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7577 -2.0013 1.5148 6 7 2.2975 -2.3900 2.6563 7 6 2.9106 -1.4843 3.3532 8 7 3.5298 -1.7054 4.5734 9 6 3.5218 -3.0447 5.1670 10 6 4.2681 -3.0154 6.5022 11 1 4.0097 -2.1501 7.1126 12 6 4.2134 -4.3479 7.2679 13 6 5.6862 -4.1051 7.6383 14 1 5.8167 -3.5376 8.5597 15 7 6.5101 -5.3157 7.5925 16 6 7.2051 -5.8650 8.6359 17 6 7.8215 -6.9630 8.1584 18 7 7.5108 -7.0811 6.8589 19 6 6.7206 -6.1012 6.5145 20 6 5.7825 -3.2458 6.3666 21 16 2.8438 0.0221 2.5475 22 1 -0.3934 0.4416 -0.7651 23 1 1.7924 -0.5138 -0.8899 24 1 1.5613 2.4680 1.2084 25 1 3.5344 1.7705 -0.0322 26 1 1.2220 -2.6755 0.8630 27 1 3.9690 -0.9734 5.0341 28 1 2.4924 -3.3626 5.3326 29 1 4.0138 -3.7445 4.4914 30 1 3.5395 -4.3320 8.1244 31 1 4.0607 -5.2149 6.6252 32 1 7.2501 -5.4903 9.6478 33 1 8.4543 -7.6317 8.7229 34 1 6.3064 -5.9431 5.5297 35 1 6.0603 -3.8117 5.4773 36 1 6.3753 -2.3401 6.4955 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567488_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:52 Heat of formation + Delta-G solvation = 119.384095 kcal Electronic energy + Delta-G solvation = -20093.513817 eV Core-core repulsion = 16901.602694 eV Total energy + Delta-G solvation = -3191.911123 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.12339 -40.90891 -40.11309 -37.88810 -36.59937 -33.62585 -31.70691 -30.38632 -29.12158 -26.93325 -26.42944 -25.01155 -23.97802 -22.51881 -21.93839 -20.82143 -20.40341 -19.64260 -18.45952 -18.33215 -17.60544 -16.87524 -16.42563 -16.20057 -16.05077 -15.68139 -15.49189 -15.20067 -14.89502 -14.59861 -14.56429 -14.46521 -14.26826 -13.65999 -13.46297 -13.20459 -12.91018 -12.56696 -12.24582 -12.13486 -11.79344 -11.77562 -11.21899 -10.98466 -10.80035 -10.51392 -10.42815 -10.23576 -9.49107 -8.86410 -5.18603 -0.20151 -0.05397 0.50272 1.07505 1.23782 1.57115 1.82734 1.84994 1.91851 2.06163 2.17844 3.22783 3.27920 3.48098 3.55400 3.58279 3.70244 3.80321 3.94376 3.97699 4.06541 4.23103 4.40960 4.47148 4.55796 4.58639 4.61323 4.64951 4.67724 4.76293 4.84461 4.91270 4.96124 5.16497 5.39317 5.68753 5.80352 6.02652 6.25844 6.84511 6.92213 7.11351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.025 4.025 3 Si 0.756 3.244 4 C -0.274 4.274 5 C 0.109 3.891 6 N -0.573 5.573 7 C 0.326 3.674 8 N -0.681 5.681 9 C 0.149 3.851 10 C -0.104 4.104 11 H 0.126 0.874 12 C -0.131 4.131 13 C 0.105 3.895 14 H 0.146 0.854 15 N -0.445 5.445 16 C -0.048 4.048 17 C -0.066 4.066 18 N -0.543 5.543 19 C 0.174 3.826 20 C -0.138 4.138 21 S 0.054 5.946 22 H 0.405 0.595 23 H 0.106 0.894 24 H -0.283 1.283 25 H -0.275 1.275 26 H 0.189 0.811 27 H 0.425 0.575 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.203 0.797 33 H 0.175 0.825 34 H 0.216 0.784 35 H 0.087 0.913 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 6.388 -0.026 6.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.138 4.138 3 Si 0.660 3.340 4 C -0.396 4.396 5 C -0.041 4.041 6 N -0.300 5.300 7 C -0.045 4.045 8 N -0.322 5.322 9 C 0.024 3.976 10 C -0.124 4.124 11 H 0.144 0.856 12 C -0.170 4.170 13 C 0.002 3.998 14 H 0.164 0.836 15 N -0.127 5.127 16 C -0.181 4.181 17 C -0.212 4.212 18 N -0.262 5.262 19 C -0.109 4.109 20 C -0.175 4.175 21 S 0.302 5.698 22 H 0.256 0.744 23 H 0.123 0.877 24 H -0.210 1.210 25 H -0.202 1.202 26 H 0.205 0.795 27 H 0.264 0.736 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.220 0.780 33 H 0.192 0.808 34 H 0.233 0.767 35 H 0.106 0.894 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.615 6.449 0.941 6.546 hybrid contribution -0.422 -0.464 0.360 0.723 sum -1.037 5.984 1.300 6.211 Atomic orbital electron populations 1.86468 1.17106 1.82358 1.51496 1.23864 0.85689 1.09807 0.94403 0.94160 0.78464 0.75732 0.85612 1.24660 1.14660 0.97003 1.03269 1.21590 0.96596 0.93644 0.92223 1.66477 1.20023 1.33983 1.09545 1.24002 0.95273 0.92653 0.92600 1.44119 1.58547 1.13074 1.16445 1.21378 1.00768 0.82362 0.93127 1.22555 0.94622 0.99827 0.95371 0.85649 1.23400 0.94894 0.97528 1.01165 1.23372 0.90357 0.83774 1.02253 0.83588 1.45756 1.36312 1.21526 1.09076 1.23225 1.00930 0.98414 0.95580 1.22679 1.06265 1.00530 0.91764 1.70264 1.16358 1.24478 1.15072 1.25140 1.00842 0.89829 0.95058 1.23544 0.96668 1.00578 0.96757 1.84105 1.56460 1.12653 1.16574 0.74358 0.87670 1.21003 1.20162 0.79462 0.73554 0.91884 0.91921 0.88701 0.89534 0.78009 0.80802 0.76726 0.89441 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.27 12.86 -148.98 -1.92 -1.64 16 2 C -0.02 0.01 2.98 71.24 0.21 0.23 16 3 Si 0.76 -1.37 31.07 68.60 2.13 0.76 16 4 C -0.27 -1.54 5.76 24.57 0.14 -1.39 16 5 C 0.11 0.75 11.24 83.54 0.94 1.69 16 6 N -0.57 -4.86 10.14 -202.03 -2.05 -6.91 16 7 C 0.33 1.58 8.09 179.32 1.45 3.04 16 8 N -0.68 1.43 5.71 -351.02 -2.01 -0.58 16 9 C 0.15 -0.63 5.79 86.38 0.50 -0.13 16 10 C -0.10 1.05 3.75 -10.27 -0.04 1.02 16 11 H 0.13 -1.66 8.14 -2.39 -0.02 -1.68 16 12 C -0.13 1.12 7.32 31.12 0.23 1.34 16 13 C 0.10 -0.82 4.64 45.52 0.21 -0.61 16 14 H 0.15 -1.72 8.14 -2.39 -0.02 -1.74 16 15 N -0.44 0.27 2.94 -503.78 -1.48 -1.21 16 16 C -0.05 -0.04 11.58 83.09 0.96 0.92 16 17 C -0.07 -0.44 11.87 83.52 0.99 0.55 16 18 N -0.54 -6.00 11.25 -200.32 -2.25 -8.25 16 19 C 0.17 0.72 11.36 180.27 2.05 2.77 16 20 C -0.14 1.24 7.19 31.12 0.22 1.46 16 21 S 0.05 0.28 20.59 -56.49 -1.16 -0.89 16 22 H 0.40 -4.62 8.74 -74.06 -0.65 -5.27 16 23 H 0.11 -0.55 7.96 -2.39 -0.02 -0.57 16 24 H -0.28 -1.57 7.11 99.48 0.71 -0.86 16 25 H -0.28 -0.94 7.11 99.48 0.71 -0.23 16 26 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 27 H 0.43 -2.98 8.60 -92.71 -0.80 -3.77 16 28 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.06 -0.11 7.84 -2.39 -0.02 -0.13 16 30 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H 0.09 -0.50 7.86 -2.39 -0.02 -0.52 16 32 H 0.20 -1.24 8.06 -2.91 -0.02 -1.26 16 33 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 34 H 0.22 -0.24 7.45 -2.91 -0.02 -0.27 16 35 H 0.09 -0.57 6.69 -2.39 -0.02 -0.59 16 36 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 Total: 0.00 -24.42 320.36 -1.16 -25.58 By element: Atomic # 1 Polarization: -17.43 SS G_CDS: -0.29 Total: -17.72 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 7.87 Total: 10.87 kcal Atomic # 7 Polarization: -9.16 SS G_CDS: -7.79 Total: -16.95 kcal Atomic # 8 Polarization: 0.27 SS G_CDS: -1.92 Total: -1.64 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.13 Total: 0.76 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.16 Total: -0.89 kcal Total: -24.42 -1.16 -25.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567488_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.963 kcal (2) G-P(sol) polarization free energy of solvation -24.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds