Wall clock time and date at job start Mon Mar 8 2021 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33320 * 125.95583 * 2 1 4 4 C 1.50707 * 122.70763 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47135 * 29.99474 * 4 3 2 6 6 Si 1.86302 * 109.47018 * 149.99966 * 4 3 2 7 7 N 1.32126 * 114.58260 * 179.75458 * 3 2 1 8 8 C 1.29685 * 116.86395 * 0.46974 * 7 3 2 9 9 N 1.38602 * 124.94870 * 179.81458 * 8 7 3 10 10 C 1.46505 * 119.99911 * 179.72543 * 9 8 7 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.09006 * 112.85174 * 314.66891 * 11 10 9 13 13 C 1.53785 * 113.61469 * 85.85810 * 11 10 9 14 14 C 1.53960 * 87.01698 * 139.95194 * 13 11 10 15 15 H 1.09010 * 113.60992 * 89.20337 * 14 13 11 16 16 N 1.46492 * 113.66740 * 220.06706 * 14 13 11 17 17 C 1.36885 * 126.39948 * 217.27873 * 16 14 13 18 18 C 1.34670 * 106.81879 * 179.84784 * 17 16 14 19 19 N 1.34129 * 108.02058 * 0.41320 * 18 17 16 20 20 C 1.30502 * 109.25698 * 359.74172 * 19 18 17 21 21 C 1.53781 * 113.61747 * 183.47137 * 11 10 9 22 22 S 1.70970 * 110.10098 * 359.55283 * 8 7 3 23 23 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47112 * 299.97531 * 1 2 3 25 25 H 1.09003 * 109.46850 * 59.97310 * 1 2 3 26 26 H 1.09002 * 109.46708 * 269.99418 * 4 3 2 27 27 H 0.96698 * 114.00086 * 60.00485 * 5 4 3 28 28 H 1.48497 * 109.99616 * 179.97438 * 6 4 3 29 29 H 1.48496 * 109.99753 * 301.31434 * 6 4 3 30 30 H 0.96996 * 120.00482 * 359.72117 * 9 8 7 31 31 H 1.09002 * 109.47068 * 299.99996 * 10 9 8 32 32 H 1.09001 * 109.47372 * 60.00084 * 10 9 8 33 33 H 1.08990 * 113.61776 * 254.52903 * 13 11 10 34 34 H 1.09003 * 113.61076 * 25.43911 * 13 11 10 35 35 H 1.07999 * 126.58923 * 359.97438 * 17 16 14 36 36 H 1.08001 * 125.99130 * 180.12087 * 18 17 16 37 37 H 1.07991 * 125.64940 * 180.02562 * 20 19 18 38 38 H 1.09004 * 113.61304 * 334.56532 * 21 11 10 39 39 H 1.08994 * 113.61748 * 105.47192 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4816 2.5019 0.6745 6 14 2.9327 3.6146 0.8787 7 7 3.5851 0.8186 0.0051 8 6 3.9315 -0.4311 0.0000 9 7 5.2384 -0.8928 0.0004 10 6 5.5064 -2.3331 0.0003 11 6 7.0178 -2.5706 0.0002 12 1 7.5456 -1.9386 -0.7142 13 6 7.6423 -2.5657 1.4055 14 6 8.5166 -3.7417 0.9334 15 1 9.4557 -3.4311 0.4750 16 7 8.6957 -4.7850 1.9460 17 6 9.8354 -5.5077 2.1751 18 6 9.5653 -6.3500 3.1906 19 7 8.2925 -6.1535 3.5652 20 6 7.7653 -5.2176 2.8241 21 6 7.4081 -4.0556 -0.0852 22 16 2.5412 -1.4262 0.0000 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8902 25 1 -0.3633 0.5143 -0.8898 26 1 1.6090 2.8216 -1.0270 27 1 0.5240 2.2119 1.5960 28 1 2.4037 5.0021 0.8855 29 1 3.1464 3.1451 2.2712 30 1 5.9755 -0.2623 0.0007 31 1 5.0674 -2.7844 0.8901 32 1 5.0681 -2.7842 -0.8899 33 1 8.2085 -1.6616 1.6287 34 1 6.9408 -2.8330 2.1959 35 1 10.7720 -5.4181 1.6448 36 1 10.2517 -7.0624 3.6239 37 1 6.7528 -4.8497 2.9007 38 1 6.6426 -4.7309 0.2969 39 1 7.7856 -4.3522 -1.0637 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567488_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:57 Heat of formation + Delta-G solvation = 113.125275 kcal Electronic energy + Delta-G solvation = -22126.559083 eV Core-core repulsion = 18778.838938 eV Total energy + Delta-G solvation = -3347.720145 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.15240 -41.09022 -40.46268 -38.08405 -36.65246 -33.73461 -32.71045 -30.41262 -29.86130 -28.32154 -27.25165 -25.63535 -24.78334 -24.09619 -22.58086 -22.03465 -20.88802 -20.27810 -19.24298 -18.56313 -17.92401 -17.37377 -17.13849 -16.70656 -16.35460 -15.97466 -15.82142 -15.63926 -15.21453 -14.95564 -14.73588 -14.51923 -14.15767 -13.99913 -13.94365 -13.79000 -13.68500 -13.49918 -13.36779 -12.74955 -12.53104 -12.32567 -12.12354 -12.02130 -11.80364 -11.09633 -10.89752 -10.63277 -10.53944 -10.52861 -10.01731 -9.45801 -8.67907 -4.69105 -0.00560 0.13989 0.74509 1.05868 1.36830 1.66047 1.80923 1.82869 1.93892 2.10062 2.27802 2.88180 2.97024 3.22327 3.25033 3.30282 3.51206 3.61244 3.76079 3.83242 3.89861 4.08296 4.14089 4.22897 4.23896 4.30675 4.31682 4.49791 4.52462 4.53890 4.57815 4.75668 4.77050 4.85391 4.86964 5.03388 5.25302 5.31084 5.47033 5.81254 6.17140 6.20700 6.35341 6.91398 7.15790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.241 4.241 3 C 0.068 3.932 4 C -0.042 4.042 5 O -0.525 6.525 6 Si 0.722 3.278 7 N -0.537 5.537 8 C 0.318 3.682 9 N -0.694 5.694 10 C 0.133 3.867 11 C -0.117 4.117 12 H 0.110 0.890 13 C -0.140 4.140 14 C 0.109 3.891 15 H 0.126 0.874 16 N -0.450 5.450 17 C -0.056 4.056 18 C -0.030 4.030 19 N -0.493 5.493 20 C 0.181 3.819 21 C -0.135 4.135 22 S 0.101 5.899 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.375 0.625 28 H -0.261 1.261 29 H -0.268 1.268 30 H 0.414 0.586 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.200 0.800 38 H 0.097 0.903 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -0.359 -3.680 4.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.364 4.364 3 C -0.063 4.063 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.622 3.378 7 N -0.264 5.264 8 C -0.054 4.054 9 N -0.335 5.335 10 C 0.009 3.991 11 C -0.136 4.136 12 H 0.129 0.871 13 C -0.178 4.178 14 C 0.005 3.995 15 H 0.144 0.856 16 N -0.133 5.133 17 C -0.189 4.189 18 C -0.177 4.177 19 N -0.211 5.211 20 C -0.101 4.101 21 C -0.174 4.174 22 S 0.350 5.650 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.142 0.858 27 H 0.223 0.777 28 H -0.186 1.186 29 H -0.192 1.192 30 H 0.252 0.748 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.216 0.784 38 H 0.115 0.885 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.680 -0.829 -3.039 4.136 hybrid contribution -0.185 0.809 -0.087 0.835 sum 2.495 -0.019 -3.126 4.000 Atomic orbital electron populations 1.20148 0.86424 1.01706 1.03658 1.25115 1.01324 0.92697 1.17251 1.20074 0.86827 0.97151 1.02212 1.24472 0.91898 0.95345 1.03703 1.86624 1.28613 1.89029 1.28832 0.93657 0.86123 0.76420 0.81595 1.65723 1.17031 1.16433 1.27254 1.23238 0.91750 0.91498 0.98885 1.43842 1.01844 1.07003 1.80829 1.21512 0.95472 0.79624 1.02488 1.22562 0.94574 0.98029 0.98411 0.87139 1.23589 0.98752 0.98258 0.97208 1.23072 1.00071 0.87457 0.88899 0.85633 1.45567 1.11193 1.29036 1.27480 1.22796 0.92470 0.99516 1.04098 1.22377 0.94076 1.02798 0.98470 1.70342 1.08899 1.15942 1.25894 1.24836 0.96993 0.97111 0.91198 1.23447 0.97851 0.95831 1.00225 1.84007 0.96560 1.10564 1.73892 0.92268 0.90206 0.90505 0.85835 0.77660 1.18624 1.19243 0.74799 0.91100 0.90827 0.89512 0.88566 0.80896 0.81298 0.78365 0.88478 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.00 8.91 36.00 0.32 0.32 16 2 C -0.24 -0.33 6.50 -36.03 -0.23 -0.57 16 3 C 0.07 0.13 5.92 -84.18 -0.50 -0.37 16 4 C -0.04 -0.04 2.94 36.01 0.11 0.07 16 5 O -0.53 -0.49 10.17 -35.23 -0.36 -0.85 16 6 Si 0.72 0.70 32.08 -169.99 -5.45 -4.75 16 7 N -0.54 -1.07 8.94 -11.36 -0.10 -1.17 16 8 C 0.32 0.16 8.24 -87.69 -0.72 -0.57 16 9 N -0.69 1.70 5.71 -62.30 -0.36 1.34 16 10 C 0.13 -0.60 5.35 -4.04 -0.02 -0.62 16 11 C -0.12 0.69 3.75 -89.81 -0.34 0.35 16 12 H 0.11 -0.73 8.14 -51.93 -0.42 -1.15 16 13 C -0.14 0.71 7.20 -25.82 -0.19 0.52 16 14 C 0.11 -0.46 4.64 -67.03 -0.31 -0.77 16 15 H 0.13 -0.68 8.14 -51.92 -0.42 -1.10 16 16 N -0.45 0.46 2.94 -110.49 -0.33 0.13 16 17 C -0.06 0.00 11.58 -16.56 -0.19 -0.19 16 18 C -0.03 -0.06 11.87 -17.81 -0.21 -0.28 16 19 N -0.49 -1.96 11.25 -14.66 -0.16 -2.13 16 20 C 0.18 0.13 11.38 -90.37 -1.03 -0.90 16 21 C -0.13 0.71 7.32 -25.92 -0.19 0.52 16 22 S 0.10 0.01 22.32 -107.50 -2.40 -2.38 16 23 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 24 H 0.08 -0.05 6.40 -51.93 -0.33 -0.39 16 25 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.12 0.03 7.96 -51.93 -0.41 -0.39 16 27 H 0.38 -0.54 8.13 45.56 0.37 -0.17 16 28 H -0.26 -0.87 7.11 56.52 0.40 -0.46 16 29 H -0.27 -1.00 7.11 56.52 0.40 -0.60 16 30 H 0.41 -1.39 8.60 -40.82 -0.35 -1.74 16 31 H 0.07 -0.31 7.88 -51.93 -0.41 -0.72 16 32 H 0.07 -0.32 8.14 -51.93 -0.42 -0.74 16 33 H 0.09 -0.44 8.14 -51.93 -0.42 -0.86 16 34 H 0.10 -0.43 6.71 -51.93 -0.35 -0.78 16 35 H 0.17 -0.50 8.06 -52.49 -0.42 -0.92 16 36 H 0.17 0.07 8.06 -52.49 -0.42 -0.36 16 37 H 0.20 -0.45 7.44 -52.49 -0.39 -0.84 16 38 H 0.10 -0.45 7.86 -51.93 -0.41 -0.86 16 39 H 0.09 -0.48 8.14 -51.93 -0.42 -0.90 16 LS Contribution 337.32 15.07 5.08 5.08 Total: 0.00 -8.18 337.32 -12.87 -21.04 By element: Atomic # 1 Polarization: -8.55 SS G_CDS: -5.28 Total: -13.84 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.51 Total: -2.48 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -0.95 Total: -1.82 kcal Atomic # 8 Polarization: -0.49 SS G_CDS: -0.36 Total: -0.85 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: -5.45 Total: -4.75 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.40 Total: -2.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -8.18 -12.87 -21.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567488_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.168 kcal (2) G-P(sol) polarization free energy of solvation -8.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds