Wall clock time and date at job start Mon Mar 8 2021 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33320 * 125.95583 * 2 1 4 4 C 1.50707 * 122.70763 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47135 * 29.99474 * 4 3 2 6 6 Si 1.86302 * 109.47018 * 149.99966 * 4 3 2 7 7 N 1.32126 * 114.58260 * 179.75458 * 3 2 1 8 8 C 1.29685 * 116.86395 * 0.46974 * 7 3 2 9 9 N 1.38602 * 124.94870 * 179.81458 * 8 7 3 10 10 C 1.46505 * 119.99911 * 179.72543 * 9 8 7 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.09006 * 112.85174 * 314.66891 * 11 10 9 13 13 C 1.53785 * 113.61469 * 85.85810 * 11 10 9 14 14 C 1.53960 * 87.01698 * 139.95194 * 13 11 10 15 15 H 1.09010 * 113.60992 * 89.20337 * 14 13 11 16 16 N 1.46492 * 113.66740 * 220.06706 * 14 13 11 17 17 C 1.36885 * 126.39948 * 217.27873 * 16 14 13 18 18 C 1.34670 * 106.81879 * 179.84784 * 17 16 14 19 19 N 1.34129 * 108.02058 * 0.41320 * 18 17 16 20 20 C 1.30502 * 109.25698 * 359.74172 * 19 18 17 21 21 C 1.53781 * 113.61747 * 183.47137 * 11 10 9 22 22 S 1.70970 * 110.10098 * 359.55283 * 8 7 3 23 23 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47112 * 299.97531 * 1 2 3 25 25 H 1.09003 * 109.46850 * 59.97310 * 1 2 3 26 26 H 1.09002 * 109.46708 * 269.99418 * 4 3 2 27 27 H 0.96698 * 114.00086 * 60.00485 * 5 4 3 28 28 H 1.48497 * 109.99616 * 179.97438 * 6 4 3 29 29 H 1.48496 * 109.99753 * 301.31434 * 6 4 3 30 30 H 0.96996 * 120.00482 * 359.72117 * 9 8 7 31 31 H 1.09002 * 109.47068 * 299.99996 * 10 9 8 32 32 H 1.09001 * 109.47372 * 60.00084 * 10 9 8 33 33 H 1.08990 * 113.61776 * 254.52903 * 13 11 10 34 34 H 1.09003 * 113.61076 * 25.43911 * 13 11 10 35 35 H 1.07999 * 126.58923 * 359.97438 * 17 16 14 36 36 H 1.08001 * 125.99130 * 180.12087 * 18 17 16 37 37 H 1.07991 * 125.64940 * 180.02562 * 20 19 18 38 38 H 1.09004 * 113.61304 * 334.56532 * 21 11 10 39 39 H 1.08994 * 113.61748 * 105.47192 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4816 2.5019 0.6745 6 14 2.9327 3.6146 0.8787 7 7 3.5851 0.8186 0.0051 8 6 3.9315 -0.4311 0.0000 9 7 5.2384 -0.8928 0.0004 10 6 5.5064 -2.3331 0.0003 11 6 7.0178 -2.5706 0.0002 12 1 7.5456 -1.9386 -0.7142 13 6 7.6423 -2.5657 1.4055 14 6 8.5166 -3.7417 0.9334 15 1 9.4557 -3.4311 0.4750 16 7 8.6957 -4.7850 1.9460 17 6 9.8354 -5.5077 2.1751 18 6 9.5653 -6.3500 3.1906 19 7 8.2925 -6.1535 3.5652 20 6 7.7653 -5.2176 2.8241 21 6 7.4081 -4.0556 -0.0852 22 16 2.5412 -1.4262 0.0000 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8902 25 1 -0.3633 0.5143 -0.8898 26 1 1.6090 2.8216 -1.0270 27 1 0.5240 2.2119 1.5960 28 1 2.4037 5.0021 0.8855 29 1 3.1464 3.1451 2.2712 30 1 5.9755 -0.2623 0.0007 31 1 5.0674 -2.7844 0.8901 32 1 5.0681 -2.7842 -0.8899 33 1 8.2085 -1.6616 1.6287 34 1 6.9408 -2.8330 2.1959 35 1 10.7720 -5.4181 1.6448 36 1 10.2517 -7.0624 3.6239 37 1 6.7528 -4.8497 2.9007 38 1 6.6426 -4.7309 0.2969 39 1 7.7856 -4.3522 -1.0637 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567488_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:59:56 Heat of formation + Delta-G solvation = 116.937106 kcal Electronic energy + Delta-G solvation = -22126.393789 eV Core-core repulsion = 18778.838938 eV Total energy + Delta-G solvation = -3347.554852 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.08213 -41.08184 -40.17921 -38.07670 -36.54101 -33.66560 -32.67908 -30.38730 -29.80536 -28.18350 -26.84638 -25.63165 -24.64511 -23.99626 -22.48839 -21.93878 -20.82884 -20.03061 -19.19956 -18.41751 -17.94637 -17.27023 -16.85187 -16.65312 -16.24088 -15.86479 -15.71975 -15.63266 -15.13157 -14.87727 -14.61211 -14.45579 -14.27289 -13.88434 -13.78798 -13.61393 -13.53529 -13.37838 -13.17357 -12.76581 -12.46762 -12.13739 -11.96718 -11.76403 -11.66310 -10.99390 -10.94645 -10.65897 -10.56431 -10.47172 -10.02519 -9.46032 -8.62242 -4.79788 -0.01978 0.16030 0.72998 1.11081 1.29266 1.66571 1.81479 1.85078 1.97723 2.01026 2.21152 3.24027 3.28823 3.36705 3.52744 3.60926 3.66602 3.83449 3.97676 4.07145 4.15712 4.25163 4.32027 4.42630 4.51725 4.56853 4.62645 4.63993 4.71119 4.79038 4.79757 4.87768 4.91965 4.96127 5.04973 5.19980 5.27996 5.42313 5.62169 5.83179 6.29980 6.30805 6.43822 6.93018 7.14813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.259 4.259 3 C 0.057 3.943 4 C -0.042 4.042 5 O -0.533 6.533 6 Si 0.784 3.216 7 N -0.559 5.559 8 C 0.311 3.689 9 N -0.684 5.684 10 C 0.130 3.870 11 C -0.100 4.100 12 H 0.125 0.875 13 C -0.139 4.139 14 C 0.102 3.898 15 H 0.143 0.857 16 N -0.445 5.445 17 C -0.049 4.049 18 C -0.066 4.066 19 N -0.544 5.544 20 C 0.175 3.825 21 C -0.130 4.130 22 S 0.115 5.885 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.384 0.616 28 H -0.293 1.293 29 H -0.306 1.306 30 H 0.419 0.581 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.201 0.799 36 H 0.173 0.827 37 H 0.220 0.780 38 H 0.091 0.909 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -0.274 -4.885 5.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.382 4.382 3 C -0.073 4.073 4 C -0.154 4.154 5 O -0.340 6.340 6 Si 0.690 3.310 7 N -0.287 5.287 8 C -0.060 4.060 9 N -0.325 5.325 10 C 0.007 3.993 11 C -0.119 4.119 12 H 0.143 0.857 13 C -0.177 4.177 14 C -0.001 4.001 15 H 0.161 0.839 16 N -0.127 5.127 17 C -0.182 4.182 18 C -0.213 4.213 19 N -0.263 5.263 20 C -0.107 4.107 21 C -0.169 4.169 22 S 0.364 5.636 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.149 0.851 27 H 0.234 0.766 28 H -0.221 1.221 29 H -0.233 1.233 30 H 0.258 0.742 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.218 0.782 36 H 0.190 0.810 37 H 0.236 0.764 38 H 0.109 0.891 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.263 -0.754 -4.269 5.426 hybrid contribution -0.335 0.765 0.318 0.893 sum 2.928 0.011 -3.951 4.918 Atomic orbital electron populations 1.20144 0.85825 1.02080 1.03637 1.25328 1.02029 0.93220 1.17648 1.20194 0.87108 0.97498 1.02531 1.24500 0.91704 0.95128 1.04084 1.86598 1.28675 1.89070 1.29667 0.92908 0.85238 0.73734 0.79141 1.65727 1.17128 1.17225 1.28638 1.23513 0.92863 0.91361 0.98303 1.44011 1.00968 1.07961 1.79547 1.21656 0.96574 0.78410 1.02704 1.22462 0.93480 0.97808 0.98124 0.85687 1.23583 0.98562 0.98021 0.97523 1.23423 1.01320 0.86842 0.88474 0.83933 1.45760 1.10432 1.29064 1.27403 1.23204 0.93494 0.98394 1.03128 1.22653 0.94103 1.04422 1.00125 1.70263 1.10137 1.17961 1.27940 1.25192 0.97963 0.96553 0.91037 1.23413 0.97254 0.96031 1.00174 1.83875 0.96066 1.09804 1.73843 0.91680 0.89749 0.90980 0.85117 0.76612 1.22134 1.23299 0.74173 0.90992 0.90500 0.89131 0.89195 0.78178 0.81008 0.76366 0.89064 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.00 8.91 71.24 0.63 0.63 16 2 C -0.26 -0.73 6.50 24.57 0.16 -0.57 16 3 C 0.06 0.22 5.92 41.40 0.25 0.47 16 4 C -0.04 -0.09 2.94 71.24 0.21 0.12 16 5 O -0.53 -1.14 10.17 -148.98 -1.52 -2.66 16 6 Si 0.78 2.15 32.08 68.60 2.20 4.35 16 7 N -0.56 -2.19 8.94 -189.86 -1.70 -3.88 16 8 C 0.31 0.16 8.24 179.32 1.48 1.64 16 9 N -0.68 4.06 5.71 -351.00 -2.01 2.05 16 10 C 0.13 -1.33 5.35 86.38 0.46 -0.87 16 11 C -0.10 1.36 3.75 -10.27 -0.04 1.32 16 12 H 0.13 -1.99 8.14 -2.38 -0.02 -2.01 16 13 C -0.14 1.60 7.20 31.18 0.22 1.82 16 14 C 0.10 -1.03 4.64 45.58 0.21 -0.82 16 15 H 0.14 -1.90 8.14 -2.38 -0.02 -1.91 16 16 N -0.44 1.17 2.94 -503.49 -1.48 -0.31 16 17 C -0.05 0.02 11.58 83.09 0.96 0.98 16 18 C -0.07 -0.36 11.87 83.52 0.99 0.63 16 19 N -0.54 -5.06 11.25 -200.31 -2.25 -7.32 16 20 C 0.17 0.31 11.38 180.26 2.05 2.36 16 21 C -0.13 1.58 7.32 31.12 0.23 1.80 16 22 S 0.12 0.00 22.32 -56.49 -1.26 -1.27 16 23 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.08 -0.10 6.40 -2.39 -0.02 -0.12 16 25 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.13 0.06 7.96 -2.39 -0.02 0.04 16 27 H 0.38 -0.94 8.13 -74.06 -0.60 -1.54 16 28 H -0.29 -2.33 7.11 99.48 0.71 -1.63 16 29 H -0.31 -2.76 7.11 99.48 0.71 -2.05 16 30 H 0.42 -3.35 8.60 -92.71 -0.80 -4.15 16 31 H 0.07 -0.71 7.88 -2.39 -0.02 -0.73 16 32 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 34 H 0.09 -0.88 6.71 -2.39 -0.02 -0.89 16 35 H 0.20 -1.44 8.06 -2.91 -0.02 -1.46 16 36 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.22 -0.96 7.44 -2.92 -0.02 -0.98 16 38 H 0.09 -0.95 7.86 -2.38 -0.02 -0.96 16 39 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16 Total: 0.00 -20.20 337.32 -0.47 -20.67 By element: Atomic # 1 Polarization: -20.89 SS G_CDS: -0.28 Total: -21.17 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 7.82 Total: 9.52 kcal Atomic # 7 Polarization: -2.02 SS G_CDS: -7.44 Total: -9.46 kcal Atomic # 8 Polarization: -1.14 SS G_CDS: -1.52 Total: -2.66 kcal Atomic # 14 Polarization: 2.15 SS G_CDS: 2.20 Total: 4.35 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.26 Total: -1.27 kcal Total: -20.20 -0.47 -20.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567488_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.611 kcal (2) G-P(sol) polarization free energy of solvation -20.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds