Wall clock time and date at job start Mon Mar 8 2021 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47188 * 2 1 4 4 C 1.50705 * 109.47271 * 120.00124 * 2 1 3 5 5 C 1.37984 * 120.32227 * 245.00405 * 4 2 1 6 6 N 1.32014 * 120.89256 * 180.02562 * 5 4 2 7 7 C 1.32336 * 121.65258 * 359.97438 * 6 5 4 8 8 N 1.39143 * 119.71902 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99917 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.46829 * 180.02562 * 9 8 7 11 11 H 1.09000 * 112.84862 * 316.19257 * 10 9 8 12 12 C 1.53780 * 113.61897 * 87.50077 * 10 9 8 13 13 C 1.53775 * 87.08145 * 139.97862 * 12 10 9 14 14 H 1.09003 * 113.69254 * 89.12908 * 13 12 10 15 15 N 1.46500 * 113.61828 * 220.01872 * 13 12 10 16 16 C 1.36883 * 126.40270 * 217.49955 * 15 13 12 17 17 C 1.34666 * 106.81734 * 180.02562 * 16 15 13 18 18 N 1.34126 * 108.02240 * 359.97438 * 17 16 15 19 19 C 1.30494 * 109.25549 * 0.02562 * 18 17 16 20 20 C 1.53779 * 113.61386 * 185.00209 * 10 9 8 21 21 C 1.39346 * 120.55886 * 0.25808 * 7 6 5 22 22 F 1.35104 * 120.46653 * 179.72061 * 21 7 6 23 23 C 1.38445 * 119.05984 * 359.49640 * 21 7 6 24 24 H 0.96707 * 114.00005 * 299.99506 * 1 2 3 25 25 H 1.08996 * 109.46969 * 240.00172 * 2 1 3 26 26 H 1.48498 * 109.99991 * 300.00512 * 3 2 1 27 27 H 1.48511 * 109.99772 * 61.31791 * 3 2 1 28 28 H 1.07992 * 119.55541 * 0.03644 * 5 4 2 29 29 H 0.97002 * 119.99623 * 180.02562 * 8 7 6 30 30 H 1.08994 * 109.46945 * 60.00444 * 9 8 7 31 31 H 1.09001 * 109.47287 * 299.99861 * 9 8 7 32 32 H 1.08998 * 113.60965 * 25.42853 * 12 10 9 33 33 H 1.08998 * 113.61525 * 254.53438 * 12 10 9 34 34 H 1.08000 * 126.58593 * 359.97438 * 16 15 13 35 35 H 1.07999 * 125.98413 * 180.02562 * 17 16 15 36 36 H 1.08006 * 125.64795 * 180.26456 * 19 18 17 37 37 H 1.09003 * 113.61665 * 105.46620 * 20 10 9 38 38 H 1.09000 * 113.61237 * 334.56721 * 20 10 9 39 39 H 1.07992 * 120.75802 * 180.24391 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6381 -0.0201 2.1937 6 7 3.0838 -0.6313 3.2757 7 6 2.8730 -1.9215 3.4810 8 7 3.3616 -2.5250 4.6356 9 6 4.1052 -1.7325 5.6180 10 6 4.5267 -2.6298 6.7834 11 1 3.7297 -3.2954 7.1148 12 6 5.8717 -3.3406 6.5585 13 6 6.1790 -3.0581 8.0385 14 1 5.8353 -3.8411 8.7144 15 7 7.5682 -2.6636 8.2846 16 6 8.3338 -3.0160 9.3632 17 6 9.5387 -2.4398 9.1907 18 7 9.5099 -1.7548 8.0379 19 6 8.3327 -1.8841 7.4898 20 6 5.2105 -1.8684 7.9311 21 6 2.1711 -2.6820 2.5479 22 9 1.9619 -4.0003 2.7568 23 6 1.6871 -2.0665 1.4061 24 1 -0.3933 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 1.5614 2.4679 -1.2084 27 1 1.5878 2.4586 1.2243 28 1 2.8290 1.0345 2.0609 29 1 3.2098 -3.4706 4.7900 30 1 3.4717 -0.9272 5.9897 31 1 4.9922 -1.3090 5.1468 32 1 6.5323 -2.8167 5.8677 33 1 5.7719 -4.4012 6.3279 34 1 8.0297 -3.6361 10.1935 35 1 10.3809 -2.5167 9.8624 36 1 8.0227 -1.4445 6.5532 37 1 4.5769 -1.7405 8.8088 38 1 5.6903 -0.9419 7.6156 39 1 1.1362 -2.6288 0.6669 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567488_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:00:00 Heat of formation + Delta-G solvation = 67.367891 kcal Electronic energy + Delta-G solvation = -23910.352018 eV Core-core repulsion = 20157.579081 eV Total energy + Delta-G solvation = -3752.772937 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.95618 -43.08212 -41.41918 -40.13042 -38.19622 -36.52954 -33.72142 -33.20126 -31.74019 -30.32164 -28.73421 -26.87061 -26.26504 -25.23119 -23.90086 -22.88506 -22.44257 -21.79211 -20.35068 -19.34403 -18.51968 -18.49118 -18.16974 -17.57194 -17.08275 -16.72090 -16.21059 -16.17933 -15.91650 -15.60418 -15.52123 -15.50203 -15.00451 -14.79570 -14.43480 -14.34661 -14.24044 -13.98650 -13.60148 -13.49065 -13.32818 -13.11431 -12.65623 -12.18592 -12.05436 -11.74854 -11.69125 -11.21070 -10.94651 -10.78226 -10.66074 -10.54536 -10.47042 -9.45522 -8.76623 -4.88648 -0.08887 0.10687 1.11541 1.31683 1.62092 1.85161 1.99389 2.01294 2.21731 2.53617 3.02043 3.25085 3.29121 3.38592 3.44788 3.60223 3.63892 3.67941 3.84590 3.85310 3.98930 4.02789 4.13815 4.30508 4.43973 4.49122 4.53862 4.60880 4.64011 4.71390 4.74298 4.76328 4.82874 4.92349 4.97674 4.99338 5.20499 5.35893 5.44763 5.83618 5.95553 6.18336 6.30190 6.50299 6.95848 7.15229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.067 4.067 3 Si 0.764 3.236 4 C -0.203 4.203 5 C 0.146 3.854 6 N -0.528 5.528 7 C 0.382 3.618 8 N -0.713 5.713 9 C 0.148 3.852 10 C -0.107 4.107 11 H 0.118 0.882 12 C -0.137 4.137 13 C 0.103 3.897 14 H 0.142 0.858 15 N -0.445 5.445 16 C -0.050 4.050 17 C -0.065 4.065 18 N -0.543 5.543 19 C 0.176 3.824 20 C -0.129 4.129 21 C -0.037 4.037 22 F -0.140 7.140 23 C -0.041 4.041 24 H 0.386 0.614 25 H 0.128 0.872 26 H -0.302 1.302 27 H -0.275 1.275 28 H 0.181 0.819 29 H 0.417 0.583 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.174 0.826 36 H 0.220 0.780 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -1.364 1.499 3.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.177 4.177 3 Si 0.669 3.331 4 C -0.209 4.209 5 C -0.011 4.011 6 N -0.245 5.245 7 C 0.143 3.857 8 N -0.346 5.346 9 C 0.024 3.976 10 C -0.126 4.126 11 H 0.136 0.864 12 C -0.175 4.175 13 C 0.001 3.999 14 H 0.160 0.840 15 N -0.127 5.127 16 C -0.184 4.184 17 C -0.212 4.212 18 N -0.262 5.262 19 C -0.107 4.107 20 C -0.168 4.168 21 C -0.064 4.064 22 F -0.119 7.119 23 C -0.067 4.067 24 H 0.236 0.764 25 H 0.146 0.854 26 H -0.230 1.230 27 H -0.201 1.201 28 H 0.197 0.803 29 H 0.255 0.745 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.218 0.782 35 H 0.191 0.809 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.324 0.078 1.415 1.939 hybrid contribution -2.196 -1.711 0.282 2.798 sum -3.519 -1.633 1.697 4.234 Atomic orbital electron populations 1.86590 1.18545 1.80359 1.50210 1.25026 0.83312 1.11617 0.97738 0.94126 0.90227 0.71840 0.76918 1.20882 1.05558 0.94214 1.00217 1.22717 0.90994 1.00307 0.87098 1.67365 1.25708 1.07411 1.24041 1.18586 0.90621 0.89058 0.87472 1.44602 1.59026 1.12443 1.18539 1.21279 0.95686 0.93301 0.87287 1.22545 0.97112 0.98128 0.94854 0.86401 1.23527 0.96761 1.02916 0.94256 1.23369 0.76973 0.99836 0.99721 0.84009 1.45763 1.12409 1.37091 1.17422 1.23204 0.92859 1.07037 0.95267 1.22659 0.99078 1.02246 0.97215 1.70264 1.21411 1.24069 1.10415 1.25194 0.87109 0.98486 0.99881 1.23390 0.96952 0.97223 0.99244 1.18139 1.09722 0.79341 0.99156 1.91469 1.93896 1.31526 1.95049 1.21448 0.95313 0.94912 0.95046 0.76416 0.85379 1.22983 1.20127 0.80280 0.74470 0.91699 0.91490 0.89126 0.89296 0.78224 0.80891 0.76412 0.88957 0.89193 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.06 12.84 -148.98 -1.91 -1.97 16 2 C -0.07 0.23 2.82 71.24 0.20 0.43 16 3 Si 0.76 -3.55 29.91 68.60 2.05 -1.50 16 4 C -0.20 0.39 5.36 -19.76 -0.11 0.28 16 5 C 0.15 -0.23 9.84 84.61 0.83 0.60 16 6 N -0.53 -0.81 9.57 -193.04 -1.85 -2.65 16 7 C 0.38 0.47 7.49 133.09 1.00 1.46 16 8 N -0.71 2.36 5.71 -344.81 -1.97 0.39 16 9 C 0.15 -0.90 5.53 86.38 0.48 -0.42 16 10 C -0.11 1.12 3.75 -10.27 -0.04 1.08 16 11 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 12 C -0.14 1.25 7.18 31.12 0.22 1.48 16 13 C 0.10 -0.83 4.64 45.52 0.21 -0.62 16 14 H 0.14 -1.61 8.14 -2.39 -0.02 -1.63 16 15 N -0.45 0.51 2.94 -503.81 -1.48 -0.97 16 16 C -0.05 -0.03 11.58 83.09 0.96 0.93 16 17 C -0.07 -0.41 11.87 83.52 0.99 0.58 16 18 N -0.54 -5.51 11.25 -200.31 -2.25 -7.77 16 19 C 0.18 0.54 11.37 180.26 2.05 2.59 16 20 C -0.13 1.20 7.32 31.12 0.23 1.42 16 21 C -0.04 -0.07 7.35 22.59 0.17 0.09 16 22 F -0.14 -0.45 16.65 44.97 0.75 0.30 16 23 C -0.04 -0.01 9.82 22.48 0.22 0.21 16 24 H 0.39 -2.08 8.70 -74.05 -0.64 -2.72 16 25 H 0.13 -0.65 7.96 -2.39 -0.02 -0.67 16 26 H -0.30 -1.08 7.11 99.48 0.71 -0.38 16 27 H -0.27 0.42 7.01 99.48 0.70 1.12 16 28 H 0.18 -1.08 4.84 -2.91 -0.01 -1.09 16 29 H 0.42 -2.36 7.94 -92.71 -0.74 -3.09 16 30 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.07 -0.31 7.84 -2.39 -0.02 -0.33 16 32 H 0.09 -0.68 6.67 -2.39 -0.02 -0.70 16 33 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H 0.20 -1.22 8.06 -2.91 -0.02 -1.25 16 35 H 0.17 0.55 8.06 -2.91 -0.02 0.52 16 36 H 0.22 -0.61 7.43 -2.91 -0.02 -0.63 16 37 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.09 -0.65 7.86 -2.39 -0.02 -0.67 16 39 H 0.15 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: 0.00 -19.92 333.05 0.50 -19.42 By element: Atomic # 1 Polarization: -15.10 SS G_CDS: -0.25 Total: -15.35 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 7.42 Total: 10.11 kcal Atomic # 7 Polarization: -3.45 SS G_CDS: -7.55 Total: -11.00 kcal Atomic # 8 Polarization: -0.06 SS G_CDS: -1.91 Total: -1.97 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.75 Total: 0.30 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.05 Total: -1.50 kcal Total: -19.92 0.50 -19.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567488_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.786 kcal (2) G-P(sol) polarization free energy of solvation -19.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds