Wall clock time and date at job start Mon Mar 8 2021 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34773 * 1 3 3 O 1.21593 * 119.99894 * 2 1 4 4 N 1.34777 * 120.00097 * 179.72872 * 2 1 3 5 5 C 1.46504 * 119.99854 * 180.27545 * 4 2 1 6 6 H 1.08999 * 109.46902 * 324.99605 * 5 4 2 7 7 C 1.52995 * 109.47009 * 84.99752 * 5 4 2 8 8 C 1.53009 * 109.46932 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47168 * 300.00325 * 8 7 5 10 10 H 1.08998 * 109.46647 * 299.99878 * 9 8 7 11 11 N 1.46499 * 109.47233 * 180.02562 * 9 8 7 12 12 C 1.38402 * 120.00364 * 84.99543 * 11 9 8 13 13 N 1.32497 * 119.21673 * 359.73314 * 12 11 9 14 14 C 1.32278 * 120.74058 * 179.71882 * 13 12 11 15 15 C 1.38603 * 119.19300 * 0.54423 * 14 13 12 16 16 C 1.50703 * 120.71559 * 179.70677 * 15 14 13 17 17 O 1.42899 * 109.47411 * 245.01798 * 16 15 14 18 18 Si 1.86297 * 109.47288 * 5.02310 * 16 15 14 19 19 C 1.38602 * 118.56480 * 359.73066 * 15 14 13 20 20 N 1.32279 * 119.19401 * 359.97438 * 19 15 14 21 21 C 1.53000 * 109.47345 * 59.99482 * 9 8 7 22 22 C 1.53000 * 109.47057 * 300.00142 * 21 9 8 23 23 H 0.96998 * 120.00525 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00112 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99736 * 0.26819 * 4 2 1 26 26 H 1.09001 * 109.47135 * 299.99446 * 7 5 4 27 27 H 1.08999 * 109.47409 * 60.00164 * 7 5 4 28 28 H 1.08993 * 109.47193 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46735 * 60.00002 * 8 7 5 30 30 H 0.97001 * 119.99738 * 265.00107 * 11 9 8 31 31 H 1.07999 * 120.40245 * 180.29477 * 14 13 12 32 32 H 1.09004 * 109.46780 * 125.02473 * 16 15 14 33 33 H 0.96700 * 113.99557 * 60.00395 * 17 16 15 34 34 H 1.48503 * 109.99902 * 179.97438 * 18 16 15 35 35 H 1.48493 * 109.99913 * 301.31637 * 18 16 15 36 36 H 1.07998 * 120.40309 * 179.97438 * 19 15 14 37 37 H 1.08995 * 109.47001 * 179.97438 * 21 9 8 38 38 H 1.08999 * 109.47045 * 60.00025 * 21 9 8 39 39 H 1.08998 * 109.47599 * 300.00011 * 22 21 9 40 40 H 1.09002 * 109.46883 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9557 1.0530 0.0000 4 7 2.0216 -1.1672 0.0055 5 6 3.4867 -1.1671 0.0116 6 1 3.8524 -0.3267 -0.5783 7 6 3.9906 -1.0379 1.4504 8 6 5.5207 -1.0385 1.4568 9 6 6.0328 -2.3475 0.8526 10 1 5.6666 -3.1877 1.4426 11 7 7.4977 -2.3483 0.8593 12 6 8.1844 -2.7559 1.9896 13 7 7.5013 -3.1372 3.0590 14 6 8.1268 -3.5377 4.1535 15 6 9.5127 -3.5443 4.1762 16 6 10.2603 -3.9877 5.4073 17 8 10.9894 -2.8828 5.9455 18 14 9.0495 -4.6111 6.6784 19 6 10.1959 -3.1339 3.0423 20 7 9.5093 -2.7509 1.9785 21 6 5.5287 -2.4767 -0.5862 22 6 3.9987 -2.4762 -0.5925 23 1 -0.4851 0.8400 0.0004 24 1 -0.4850 -0.8400 0.0004 25 1 1.5366 -2.0072 0.0056 26 1 3.6255 -0.1055 1.8810 27 1 3.6249 -1.8784 2.0404 28 1 5.8798 -0.9460 2.4817 29 1 5.8867 -0.1983 0.8668 30 1 7.9865 -2.0631 0.0714 31 1 7.5645 -3.8519 5.0204 32 1 10.9536 -4.7863 5.1433 33 1 10.4348 -2.1336 6.2029 34 1 9.7744 -5.0520 7.8971 35 1 8.0791 -3.5413 7.0231 36 1 11.2758 -3.1269 3.0274 37 1 5.8939 -3.4090 -1.0168 38 1 5.8947 -1.6365 -1.1763 39 1 3.6325 -3.3163 -0.0025 40 1 3.6396 -2.5678 -1.6176 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567490_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:00:04 Heat of formation + Delta-G solvation = -12.362947 kcal Electronic energy + Delta-G solvation = -23516.496068 eV Core-core repulsion = 19946.526277 eV Total energy + Delta-G solvation = -3569.969791 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12558 -41.16020 -39.62537 -38.13986 -36.57783 -34.96205 -34.72504 -33.96966 -32.19835 -31.82912 -29.13778 -26.45547 -25.84605 -23.85973 -23.73150 -22.80117 -21.86266 -21.22252 -19.51519 -19.01580 -18.72323 -18.31264 -18.11525 -16.72540 -16.58619 -16.23903 -16.11913 -16.05066 -15.76164 -15.75732 -15.40618 -15.07285 -14.84682 -14.59653 -14.05591 -14.00666 -13.63364 -13.25542 -13.19032 -12.62324 -12.56365 -12.24256 -12.15792 -11.91076 -11.76518 -11.67765 -11.47616 -11.46662 -11.09711 -10.71839 -10.68961 -10.03985 -9.96008 -9.10432 -4.90909 0.06139 0.15047 1.32400 1.60661 1.78160 1.98477 1.99673 2.16552 2.79620 3.17054 3.43558 3.58799 3.65505 3.66179 3.68659 3.73119 3.79965 4.01751 4.15074 4.17858 4.23218 4.39308 4.40497 4.45722 4.65276 4.67634 4.72907 4.83337 4.94740 5.07919 5.11702 5.13054 5.19835 5.30185 5.38941 5.56517 5.79012 5.90405 6.03356 6.05517 6.41862 6.48651 7.11341 7.28424 7.65893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.696 3.304 3 O -0.650 6.650 4 N -0.728 5.728 5 C 0.162 3.838 6 H 0.064 0.936 7 C -0.117 4.117 8 C -0.118 4.118 9 C 0.166 3.834 10 H 0.093 0.907 11 N -0.689 5.689 12 C 0.554 3.446 13 N -0.574 5.574 14 C 0.192 3.808 15 C -0.285 4.285 16 C -0.057 4.057 17 O -0.548 6.548 18 Si 0.761 3.239 19 C 0.213 3.787 20 N -0.592 5.592 21 C -0.118 4.118 22 C -0.110 4.110 23 H 0.418 0.582 24 H 0.414 0.586 25 H 0.414 0.586 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.417 0.583 31 H 0.186 0.814 32 H 0.132 0.868 33 H 0.385 0.615 34 H -0.300 1.300 35 H -0.280 1.280 36 H 0.182 0.818 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 -7.306 -1.307 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.394 3.606 3 O -0.532 6.532 4 N -0.384 5.384 5 C 0.057 3.943 6 H 0.082 0.918 7 C -0.156 4.156 8 C -0.158 4.158 9 C 0.062 3.938 10 H 0.111 0.889 11 N -0.324 5.324 12 C 0.197 3.803 13 N -0.296 5.296 14 C 0.024 3.976 15 C -0.293 4.293 16 C -0.168 4.168 17 O -0.355 6.355 18 Si 0.667 3.333 19 C 0.045 3.955 20 N -0.314 5.314 21 C -0.157 4.157 22 C -0.149 4.149 23 H 0.250 0.750 24 H 0.245 0.755 25 H 0.251 0.749 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.255 0.745 31 H 0.202 0.798 32 H 0.150 0.850 33 H 0.234 0.766 34 H -0.228 1.228 35 H -0.207 1.207 36 H 0.199 0.801 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.651 -6.525 -1.506 8.153 hybrid contribution 0.428 1.126 0.728 1.408 sum -4.223 -5.399 -0.778 6.898 Atomic orbital electron populations 1.42864 1.04245 1.13838 1.81086 1.16302 0.82975 0.84179 0.77168 1.90956 1.69181 1.32613 1.60483 1.45006 1.07058 1.07100 1.79219 1.20844 0.78155 0.99407 0.95923 0.91778 1.21783 0.94722 1.01921 0.97216 1.21800 0.95193 0.97966 1.00836 1.21024 0.77025 0.97940 0.97845 0.88940 1.44364 1.06431 1.69424 1.12228 1.19653 0.85404 0.87758 0.87479 1.67979 1.40831 1.19936 1.00880 1.23215 0.91483 0.88035 0.94832 1.21671 0.95979 1.11623 1.00043 1.24875 1.02993 0.92223 0.96663 1.86589 1.37686 1.28245 1.83021 0.94264 0.76990 0.85164 0.76929 1.23147 1.01135 0.85515 0.85688 1.68007 1.07399 1.24204 1.31803 1.21722 0.95512 1.04022 0.94433 1.21675 0.94551 0.95956 1.02703 0.74969 0.75463 0.74904 0.93879 0.90226 0.92928 0.92655 0.74486 0.79807 0.85039 0.76630 1.22763 1.20689 0.80121 0.89225 0.90847 0.89053 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.64 8.88 -184.75 -1.64 2.00 16 2 C 0.70 2.87 8.80 179.06 1.58 4.45 16 3 O -0.65 -10.19 16.84 -4.01 -0.07 -10.26 16 4 N -0.73 1.99 5.08 -457.81 -2.33 -0.33 16 5 C 0.16 -0.20 2.46 44.99 0.11 -0.09 16 6 H 0.06 0.30 7.58 -2.39 -0.02 0.28 16 7 C -0.12 -0.10 5.49 30.60 0.17 0.06 16 8 C -0.12 -0.18 5.51 30.60 0.17 -0.01 16 9 C 0.17 -0.30 2.44 44.99 0.11 -0.19 16 10 H 0.09 -0.08 7.51 -2.39 -0.02 -0.10 16 11 N -0.69 -0.74 5.22 -330.44 -1.73 -2.47 16 12 C 0.55 2.89 8.40 261.49 2.20 5.08 16 13 N -0.57 -2.41 9.21 -197.99 -1.82 -4.23 16 14 C 0.19 0.04 9.92 84.71 0.84 0.89 16 15 C -0.28 0.15 5.36 -19.69 -0.11 0.05 16 16 C -0.06 0.17 2.83 71.24 0.20 0.37 16 17 O -0.55 -0.31 12.85 -148.98 -1.91 -2.22 16 18 Si 0.76 -3.15 29.95 68.60 2.05 -1.10 16 19 C 0.21 0.47 10.99 84.71 0.93 1.40 16 20 N -0.59 -3.57 10.46 -197.99 -2.07 -5.64 16 21 C -0.12 0.72 5.39 30.59 0.17 0.89 16 22 C -0.11 0.82 5.39 30.59 0.16 0.98 16 23 H 0.42 -1.89 8.93 -92.71 -0.83 -2.72 16 24 H 0.41 -4.79 8.84 -92.71 -0.82 -5.61 16 25 H 0.41 -4.10 8.62 -92.71 -0.80 -4.90 16 26 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.42 -0.34 8.72 -92.71 -0.81 -1.15 16 31 H 0.19 -0.89 5.01 -2.91 -0.01 -0.90 16 32 H 0.13 -0.71 7.96 -2.39 -0.02 -0.72 16 33 H 0.38 -1.62 8.70 -74.06 -0.64 -2.26 16 34 H -0.30 -1.15 7.11 99.48 0.71 -0.44 16 35 H -0.28 0.11 7.02 99.48 0.70 0.81 16 36 H 0.18 -0.25 8.06 -2.91 -0.02 -0.28 16 37 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 Total: 0.00 -24.90 330.66 -5.73 -30.63 By element: Atomic # 1 Polarization: -17.52 SS G_CDS: -2.74 Total: -20.26 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.53 Total: 13.89 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -9.59 Total: -10.67 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.98 Total: -12.48 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.05 Total: -1.10 kcal Total: -24.90 -5.73 -30.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567490_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.263 kcal (2) G-P(sol) polarization free energy of solvation -24.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds