Wall clock time and date at job start Mon Mar 8 2021 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34775 * 1 3 3 O 1.21583 * 120.00144 * 2 1 4 4 N 1.34777 * 119.99585 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99665 * 179.72218 * 4 2 1 6 6 H 1.08999 * 109.47480 * 35.27807 * 5 4 2 7 7 C 1.52999 * 109.47493 * 155.28120 * 5 4 2 8 8 C 1.52992 * 109.47689 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46921 * 299.99639 * 8 7 5 10 10 H 1.09000 * 109.47077 * 299.99701 * 9 8 7 11 11 N 1.46499 * 109.47136 * 179.97438 * 9 8 7 12 12 C 1.39010 * 119.99924 * 154.99990 * 11 9 8 13 13 C 1.39088 * 119.70498 * 359.97438 * 12 11 9 14 14 C 1.38344 * 119.09684 * 179.97438 * 13 12 11 15 15 C 1.38832 * 118.50975 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.34398 * 180.02562 * 15 14 13 17 17 O 1.42905 * 109.47042 * 300.00259 * 16 15 14 18 18 Si 1.86295 * 109.47768 * 179.97438 * 16 15 14 19 19 C 1.38074 * 119.32470 * 359.97438 * 15 14 13 20 20 N 1.31941 * 120.85401 * 359.74250 * 19 15 14 21 21 C 1.53002 * 109.47179 * 60.00100 * 9 8 7 22 22 C 1.52999 * 109.47136 * 275.27771 * 5 4 2 23 23 H 0.97000 * 120.00523 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00164 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 26 26 H 1.09009 * 109.46506 * 300.00089 * 7 5 4 27 27 H 1.08999 * 109.47014 * 59.99401 * 7 5 4 28 28 H 1.08999 * 109.47499 * 59.99555 * 8 7 5 29 29 H 1.09006 * 109.47246 * 179.97438 * 8 7 5 30 30 H 0.96999 * 120.00053 * 334.99985 * 11 9 8 31 31 H 1.07998 * 120.45488 * 359.95775 * 13 12 11 32 32 H 1.08003 * 120.74800 * 180.02562 * 14 13 12 33 33 H 1.09008 * 109.46906 * 59.99759 * 16 15 14 34 34 H 0.96698 * 113.99787 * 179.97438 * 17 16 15 35 35 H 1.48502 * 110.00148 * 298.68556 * 18 16 15 36 36 H 1.48505 * 109.99704 * 60.00217 * 18 16 15 37 37 H 1.08006 * 119.57296 * 179.97438 * 19 15 14 38 38 H 1.08999 * 109.47056 * 60.00198 * 21 9 8 39 39 H 1.09000 * 109.46999 * 179.97438 * 21 9 8 40 40 H 1.09006 * 109.47500 * 299.99940 * 22 5 4 41 41 H 1.08999 * 109.47488 * 60.00276 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9557 1.0529 0.0000 4 7 2.0215 -1.1673 0.0005 5 6 3.4865 -1.1673 -0.0056 6 1 3.8524 -0.3267 0.5839 7 6 3.9991 -2.4758 0.5992 8 6 5.5290 -2.4757 0.5934 9 6 6.0335 -2.3468 -0.8453 10 1 5.6680 -3.1875 -1.4351 11 7 7.4985 -2.3460 -0.8509 12 6 8.1894 -2.7551 -1.9856 13 6 7.4837 -3.1646 -3.1121 14 6 8.1841 -3.5687 -4.2346 15 6 9.5716 -3.5501 -4.1923 16 6 10.3757 -3.9812 -5.3917 17 8 10.0626 -5.3382 -5.7124 18 14 12.1926 -3.8369 -5.0060 19 6 10.2075 -3.1317 -3.0403 20 7 9.5137 -2.7463 -1.9863 21 6 5.5210 -1.0382 -1.4502 22 6 3.9905 -1.0387 -1.4445 23 1 -0.4851 -0.8400 0.0004 24 1 -0.4850 0.8401 0.0004 25 1 1.5366 -2.0073 0.0005 26 1 3.6400 -2.5674 1.6243 27 1 3.6332 -3.3165 0.0096 28 1 5.8946 -1.6351 1.1832 29 1 5.8942 -3.4078 1.0247 30 1 7.9863 -2.0600 -0.0628 31 1 6.4037 -3.1672 -3.1104 32 1 7.6631 -3.8914 -5.1240 33 1 10.1329 -3.3420 -6.2407 34 1 10.5446 -5.6829 -6.4765 35 1 12.5367 -2.4246 -4.7022 36 1 12.5367 -4.7034 -3.8502 37 1 11.2868 -3.1161 -3.0028 38 1 5.8866 -0.1976 -0.8604 39 1 5.8808 -0.9462 -2.4750 40 1 3.6247 -1.8794 -2.0342 41 1 3.6254 -0.1065 -1.8755 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567490_13915762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:00:08 Heat of formation + Delta-G solvation = -29.616751 kcal Electronic energy + Delta-G solvation = -23340.019529 eV Core-core repulsion = 19834.727468 eV Total energy + Delta-G solvation = -3505.292061 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65591 -41.11328 -39.61772 -37.83624 -36.55024 -34.95517 -34.04822 -33.41347 -31.94580 -31.56172 -29.04582 -26.19217 -25.08239 -23.79972 -23.60810 -22.35408 -21.83757 -21.18850 -19.27673 -18.70450 -18.48911 -18.31357 -18.06858 -16.78407 -16.47608 -16.30623 -16.12509 -15.87289 -15.62123 -15.42195 -15.15117 -15.00689 -14.79065 -14.22668 -14.12327 -13.95493 -13.84421 -13.62268 -13.27204 -12.67732 -12.63795 -12.35474 -12.19453 -12.01530 -11.69838 -11.55534 -11.48406 -11.10138 -10.85863 -10.73119 -10.70885 -10.17878 -9.98171 -8.78685 -4.95906 0.06403 0.30388 1.33121 1.64546 1.86354 1.98554 2.06341 2.14892 2.68439 3.35756 3.49188 3.57747 3.58944 3.63888 3.76696 3.89872 3.96969 4.01951 4.07773 4.11105 4.27258 4.31740 4.36479 4.41827 4.45537 4.62017 4.64835 4.74518 4.85352 4.94164 5.03017 5.08719 5.09479 5.17913 5.22302 5.30629 5.43535 5.54286 5.88646 5.95006 6.01974 6.43511 6.95619 7.01620 7.09643 7.64405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.696 3.304 3 O -0.650 6.650 4 N -0.728 5.728 5 C 0.161 3.839 6 H 0.062 0.938 7 C -0.111 4.111 8 C -0.118 4.118 9 C 0.157 3.843 10 H 0.097 0.903 11 N -0.716 5.716 12 C 0.395 3.605 13 C -0.235 4.235 14 C -0.008 4.008 15 C -0.203 4.203 16 C -0.058 4.058 17 O -0.564 6.564 18 Si 0.768 3.232 19 C 0.125 3.875 20 N -0.571 5.571 21 C -0.126 4.126 22 C -0.119 4.119 23 H 0.414 0.586 24 H 0.418 0.582 25 H 0.414 0.586 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.405 0.595 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.403 0.597 35 H -0.292 1.292 36 H -0.300 1.300 37 H 0.139 0.861 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 -5.864 -3.430 8.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.394 3.606 3 O -0.532 6.532 4 N -0.384 5.384 5 C 0.055 3.945 6 H 0.080 0.920 7 C -0.149 4.149 8 C -0.157 4.157 9 C 0.053 3.947 10 H 0.115 0.885 11 N -0.347 5.347 12 C 0.158 3.842 13 C -0.260 4.260 14 C -0.034 4.034 15 C -0.208 4.208 16 C -0.169 4.169 17 O -0.374 6.374 18 Si 0.676 3.324 19 C -0.032 4.032 20 N -0.288 5.288 21 C -0.166 4.166 22 C -0.158 4.158 23 H 0.245 0.755 24 H 0.250 0.750 25 H 0.251 0.749 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.241 0.759 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.114 0.886 34 H 0.255 0.745 35 H -0.219 1.219 36 H -0.228 1.228 37 H 0.156 0.844 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.463 -4.545 -1.588 5.931 hybrid contribution -1.083 0.099 -0.052 1.088 sum -4.546 -4.447 -1.640 6.567 Atomic orbital electron populations 1.42869 1.04250 1.13846 1.81065 1.16300 0.82975 0.84177 0.77178 1.90957 1.69170 1.32616 1.60445 1.44997 1.07020 1.07098 1.79275 1.20843 0.78193 0.99242 0.96181 0.92007 1.21679 0.94359 0.96148 1.02731 1.21692 0.95581 1.03807 0.94585 1.21169 0.77313 0.97914 0.98348 0.88547 1.44712 1.05887 1.70864 1.13234 1.18659 0.87689 0.89698 0.88117 1.21759 1.02158 1.08650 0.93406 1.21483 0.92651 0.90928 0.98336 1.20362 0.95809 1.07951 0.96719 1.24473 1.08842 0.86513 0.97054 1.86431 1.70626 1.25382 1.54945 0.94532 0.76114 0.77297 0.84495 1.22106 0.98625 0.94215 0.88228 1.67059 1.07799 1.23377 1.30608 1.21938 0.95224 0.98013 1.01424 1.21828 0.94588 1.02360 0.97071 0.75465 0.74962 0.74898 0.89646 0.88741 0.91204 0.89520 0.75937 0.82436 0.82440 0.88636 0.74538 1.21921 1.22800 0.84414 0.92572 0.91841 0.89647 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 4.01 8.88 -184.75 -1.64 2.37 16 2 C 0.70 2.49 8.80 179.05 1.58 4.06 16 3 O -0.65 -9.87 16.84 -3.98 -0.07 -9.93 16 4 N -0.73 2.54 5.08 -457.82 -2.33 0.21 16 5 C 0.16 -0.33 2.45 44.99 0.11 -0.22 16 6 H 0.06 0.27 7.58 -2.39 -0.02 0.25 16 7 C -0.11 0.88 5.39 30.59 0.16 1.04 16 8 C -0.12 0.70 5.39 30.59 0.16 0.87 16 9 C 0.16 -0.52 2.14 44.99 0.10 -0.42 16 10 H 0.10 -0.51 6.45 -2.39 -0.02 -0.52 16 11 N -0.72 -1.41 5.24 -324.55 -1.70 -3.11 16 12 C 0.39 2.81 7.63 133.04 1.02 3.82 16 13 C -0.24 -0.83 8.83 22.50 0.20 -0.63 16 14 C -0.01 -0.03 9.76 22.44 0.22 0.19 16 15 C -0.20 -1.31 5.43 -19.76 -0.11 -1.41 16 16 C -0.06 0.00 2.83 71.24 0.20 0.20 16 17 O -0.56 0.33 12.76 -148.98 -1.90 -1.57 16 18 Si 0.77 -0.41 29.82 68.60 2.05 1.63 16 19 C 0.12 1.31 9.84 84.64 0.83 2.15 16 20 N -0.57 -6.86 10.39 -193.25 -2.01 -8.87 16 21 C -0.13 0.09 5.42 30.61 0.17 0.26 16 22 C -0.12 0.16 5.49 30.61 0.17 0.32 16 23 H 0.41 -4.96 8.84 -92.71 -0.82 -5.78 16 24 H 0.42 -2.04 8.93 -92.71 -0.83 -2.87 16 25 H 0.41 -4.41 8.62 -92.71 -0.80 -5.20 16 26 H 0.08 -0.72 8.14 -2.38 -0.02 -0.74 16 27 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 28 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 30 H 0.40 0.75 8.73 -92.71 -0.81 -0.06 16 31 H 0.16 -0.30 6.08 -2.91 -0.02 -0.32 16 32 H 0.16 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.10 -0.43 7.96 -2.38 -0.02 -0.45 16 34 H 0.40 -4.53 8.74 -74.06 -0.65 -5.17 16 35 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 36 H -0.30 -2.30 7.11 99.48 0.71 -1.60 16 37 H 0.14 1.36 4.88 -2.91 -0.01 1.34 16 38 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.06 0.06 7.66 -2.39 -0.02 0.04 16 40 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 41 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 Total: 0.00 -27.76 332.17 -5.54 -33.30 By element: Atomic # 1 Polarization: -21.52 SS G_CDS: -2.75 Total: -24.27 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.81 Total: 10.23 kcal Atomic # 7 Polarization: -1.72 SS G_CDS: -7.68 Total: -9.39 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.97 Total: -11.50 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: 2.05 Total: 1.63 kcal Total: -27.76 -5.54 -33.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567490_13915762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.686 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds