Wall clock time and date at job start Mon Mar 8 2021 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34784 * 1 3 3 O 1.21584 * 119.99835 * 2 1 4 4 N 1.34773 * 119.99920 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00050 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47297 * 324.99623 * 5 4 2 7 7 C 1.52997 * 109.47007 * 85.00124 * 5 4 2 8 8 C 1.53002 * 109.46817 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46972 * 299.99733 * 8 7 5 10 10 H 1.09000 * 109.47380 * 299.99696 * 9 8 7 11 11 N 1.46510 * 109.46858 * 180.02562 * 9 8 7 12 12 C 1.38611 * 119.99764 * 155.00250 * 11 9 8 13 13 N 1.29685 * 124.95027 * 359.68967 * 12 11 9 14 14 C 1.32126 * 116.86444 * 179.81487 * 13 12 11 15 15 C 1.33323 * 114.57738 * 0.48155 * 14 13 12 16 16 C 1.50708 * 125.94876 * 179.75402 * 15 14 13 17 17 O 1.42895 * 109.46806 * 299.96926 * 16 15 14 18 18 Si 1.86301 * 109.46935 * 179.97438 * 16 15 14 19 19 S 1.70966 * 124.94848 * 180.02562 * 12 11 9 20 20 C 1.52997 * 109.47131 * 60.00459 * 9 8 7 21 21 C 1.52999 * 109.46991 * 299.99311 * 20 9 8 22 22 H 0.96994 * 119.99774 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99729 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99920 * 359.97438 * 4 2 1 25 25 H 1.09002 * 109.47153 * 299.99911 * 7 5 4 26 26 H 1.08996 * 109.46952 * 60.00083 * 7 5 4 27 27 H 1.08996 * 109.47407 * 60.00219 * 8 7 5 28 28 H 1.09000 * 109.46986 * 179.97438 * 8 7 5 29 29 H 0.96994 * 119.99768 * 334.99990 * 11 9 8 30 30 H 1.08001 * 122.70737 * 180.22395 * 14 13 12 31 31 H 1.08997 * 109.46788 * 59.97235 * 16 15 14 32 32 H 0.96699 * 113.99837 * 180.02562 * 17 16 15 33 33 H 1.48504 * 109.99670 * 298.67703 * 18 16 15 34 34 H 1.48501 * 109.99952 * 59.99657 * 18 16 15 35 35 H 1.09002 * 109.47153 * 179.97438 * 20 9 8 36 36 H 1.08993 * 109.47194 * 60.00154 * 20 9 8 37 37 H 1.08993 * 109.47839 * 300.00447 * 21 20 9 38 38 H 1.09000 * 109.47160 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9557 1.0530 0.0000 4 7 2.0217 -1.1672 -0.0005 5 6 3.4867 -1.1672 -0.0011 6 1 3.8499 -0.3253 -0.5905 7 6 3.9972 -1.0419 1.4357 8 6 5.5272 -1.0412 1.4350 9 6 6.0374 -2.3482 0.8247 10 1 5.6747 -3.1903 1.4141 11 7 7.5025 -2.3478 0.8246 12 6 8.1958 -3.5481 0.8239 13 7 7.6470 -4.7231 0.8291 14 6 8.4621 -5.7629 0.8237 15 6 9.7584 -5.4512 0.8236 16 6 10.9039 -6.4306 0.8234 17 8 10.8285 -7.2519 1.9903 18 14 12.5173 -5.4992 0.8227 19 16 9.8991 -3.6952 0.8244 20 6 5.5269 -2.4735 -0.6121 21 6 3.9969 -2.4742 -0.6114 22 1 -0.4849 -0.8400 0.0004 23 1 -0.4849 0.8400 0.0004 24 1 1.5367 -2.0072 -0.0005 25 1 3.6341 -0.1106 1.8704 26 1 3.6341 -1.8838 2.0251 27 1 5.8900 -0.1991 0.8458 28 1 5.8910 -0.9515 2.4586 29 1 7.9873 -1.5077 0.8250 30 1 8.1070 -6.7828 0.8237 31 1 10.8457 -7.0574 -0.0665 32 1 11.5366 -7.9071 2.0565 33 1 12.6219 -4.6655 -0.4018 34 1 12.6087 -4.6408 2.0310 35 1 5.8908 -3.4044 -1.0471 36 1 5.8897 -1.6314 -1.2013 37 1 3.6341 -3.3163 -0.0222 38 1 3.6332 -2.5640 -1.6350 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17567490_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:00:12 Heat of formation + Delta-G solvation = -16.155632 kcal Electronic energy + Delta-G solvation = -21830.092318 eV Core-core repulsion = 18414.536221 eV Total energy + Delta-G solvation = -3415.556097 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23887 -40.66517 -39.45483 -37.81439 -36.48482 -34.80204 -33.81979 -31.95911 -31.44378 -29.29992 -26.47780 -24.69210 -23.90259 -23.39006 -21.87386 -21.42141 -20.49661 -19.56254 -19.09487 -18.44989 -18.33283 -17.48990 -16.94913 -16.25194 -16.10513 -15.95235 -15.70081 -15.52514 -15.30166 -15.09839 -14.70766 -14.56726 -14.29194 -14.09202 -13.77591 -13.31106 -12.89911 -12.61030 -12.45762 -12.31688 -12.26756 -12.07628 -11.97390 -11.41128 -11.21005 -11.05889 -10.64645 -10.60823 -10.29030 -10.11643 -10.00075 -8.71393 -5.20452 -0.01300 0.12302 0.68827 1.24402 1.59013 1.87748 1.94517 2.06226 2.15064 2.27345 3.44516 3.46671 3.54689 3.63428 3.65404 3.86765 3.98758 4.09139 4.10193 4.31006 4.34216 4.36656 4.42740 4.60872 4.66418 4.78332 4.86531 4.99699 5.00869 5.04471 5.10955 5.23076 5.28963 5.51996 5.74633 5.86439 5.96477 6.06373 6.59540 6.97672 7.02335 7.67711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.705 3.295 3 O -0.593 6.593 4 N -0.742 5.742 5 C 0.161 3.839 6 H 0.090 0.910 7 C -0.125 4.125 8 C -0.125 4.125 9 C 0.159 3.841 10 H 0.093 0.907 11 N -0.689 5.689 12 C 0.333 3.667 13 N -0.547 5.547 14 C 0.124 3.876 15 C -0.263 4.263 16 C -0.016 4.016 17 O -0.545 6.545 18 Si 0.667 3.333 19 S 0.066 5.934 20 C -0.125 4.125 21 C -0.122 4.122 22 H 0.397 0.603 23 H 0.416 0.584 24 H 0.397 0.603 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.414 0.586 30 H 0.178 0.822 31 H 0.081 0.919 32 H 0.383 0.617 33 H -0.242 1.242 34 H -0.239 1.239 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -4.215 -1.114 4.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.403 3.597 3 O -0.471 6.471 4 N -0.397 5.397 5 C 0.056 3.944 6 H 0.109 0.891 7 C -0.164 4.164 8 C -0.164 4.164 9 C 0.052 3.948 10 H 0.111 0.889 11 N -0.328 5.328 12 C -0.038 4.038 13 N -0.272 5.272 14 C -0.027 4.027 15 C -0.385 4.385 16 C -0.130 4.130 17 O -0.352 6.352 18 Si 0.566 3.434 19 S 0.315 5.685 20 C -0.165 4.165 21 C -0.161 4.161 22 H 0.225 0.775 23 H 0.248 0.752 24 H 0.230 0.770 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.251 0.749 30 H 0.195 0.805 31 H 0.099 0.901 32 H 0.231 0.769 33 H -0.166 1.166 34 H -0.163 1.163 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.812 -1.560 -1.001 2.024 hybrid contribution -1.390 -1.047 -0.088 1.743 sum -0.578 -2.608 -1.090 2.885 Atomic orbital electron populations 1.43027 1.05452 1.12683 1.82474 1.16000 0.82084 0.84301 0.77321 1.90987 1.67804 1.30415 1.57906 1.45176 1.07190 1.07144 1.80239 1.20899 0.77925 0.99069 0.96524 0.89146 1.21873 0.94224 1.03277 0.97040 1.21779 0.95980 0.96746 1.01875 1.21122 0.77645 0.99292 0.96705 0.88893 1.44195 1.05999 1.02797 1.79762 1.23804 0.92476 0.90599 0.96880 1.66472 1.36905 0.96391 1.27446 1.21337 0.87233 0.98161 0.95958 1.24265 0.98006 0.93952 1.22278 1.23666 1.03227 0.95274 0.90823 1.86513 1.54748 1.51583 1.42354 0.95186 0.82257 0.83803 0.82113 1.84117 1.05055 1.04484 1.74883 1.21883 0.94489 1.03235 0.96874 1.21752 0.95695 0.96835 1.01803 0.77533 0.75233 0.76958 0.90542 0.91332 0.90880 0.90701 0.74920 0.80525 0.90090 0.76919 1.16635 1.16287 0.90593 0.91396 0.90905 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 1.55 8.88 27.63 0.25 1.80 16 2 C 0.70 1.37 8.80 -86.91 -0.77 0.60 16 3 O -0.59 -4.03 16.84 5.29 0.09 -3.94 16 4 N -0.74 0.63 5.08 -58.67 -0.30 0.33 16 5 C 0.16 -0.06 2.45 -67.93 -0.17 -0.23 16 6 H 0.09 0.15 7.58 -51.93 -0.39 -0.24 16 7 C -0.12 0.05 5.49 -26.73 -0.15 -0.09 16 8 C -0.12 0.14 5.39 -26.73 -0.14 0.00 16 9 C 0.16 -0.06 2.59 -67.93 -0.18 -0.24 16 10 H 0.09 0.11 7.76 -51.93 -0.40 -0.30 16 11 N -0.69 -0.19 5.23 -55.78 -0.29 -0.48 16 12 C 0.33 0.89 8.06 -87.68 -0.71 0.19 16 13 N -0.55 -2.13 9.90 -15.21 -0.15 -2.28 16 14 C 0.12 0.40 11.22 -19.14 -0.21 0.19 16 15 C -0.26 -0.75 5.78 -36.02 -0.21 -0.96 16 16 C -0.02 0.00 2.98 36.01 0.11 0.10 16 17 O -0.55 -0.14 12.84 -35.23 -0.45 -0.59 16 18 Si 0.67 -0.37 31.05 -169.99 -5.28 -5.65 16 19 S 0.07 0.18 20.57 -107.50 -2.21 -2.03 16 20 C -0.13 0.08 5.51 -26.73 -0.15 -0.06 16 21 C -0.12 0.20 5.39 -26.73 -0.14 0.06 16 22 H 0.40 -1.93 8.84 -40.82 -0.36 -2.30 16 23 H 0.42 -0.89 8.93 -40.82 -0.36 -1.25 16 24 H 0.40 -1.42 8.62 -40.82 -0.35 -1.77 16 25 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 26 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 28 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.41 -0.64 8.73 -40.82 -0.36 -1.00 16 30 H 0.18 0.27 8.06 -52.49 -0.42 -0.16 16 31 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.38 -1.89 8.74 45.56 0.40 -1.49 16 33 H -0.24 -0.43 7.11 56.52 0.40 -0.03 16 34 H -0.24 -0.66 7.11 56.52 0.40 -0.25 16 35 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 37 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 38 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 LS Contribution 328.63 15.07 4.95 4.95 Total: 0.00 -10.09 328.63 -11.36 -21.44 By element: Atomic # 1 Polarization: -7.84 SS G_CDS: -5.25 Total: -13.09 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.71 Total: -0.45 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -0.50 Total: -0.64 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.36 Total: -4.54 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.28 Total: -5.65 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.21 Total: -2.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -10.09 -11.36 -21.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567490_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.286 kcal (2) G-P(sol) polarization free energy of solvation -10.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds