Wall clock time and date at job start Mon Mar 8 2021 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34784 * 1 3 3 O 1.21584 * 119.99835 * 2 1 4 4 N 1.34773 * 119.99920 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00050 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.47297 * 324.99623 * 5 4 2 7 7 C 1.52997 * 109.47007 * 85.00124 * 5 4 2 8 8 C 1.53002 * 109.46817 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46972 * 299.99733 * 8 7 5 10 10 H 1.09000 * 109.47380 * 299.99696 * 9 8 7 11 11 N 1.46510 * 109.46858 * 180.02562 * 9 8 7 12 12 C 1.38611 * 119.99764 * 155.00250 * 11 9 8 13 13 N 1.29685 * 124.95027 * 359.68967 * 12 11 9 14 14 C 1.32126 * 116.86444 * 179.81487 * 13 12 11 15 15 C 1.33323 * 114.57738 * 0.48155 * 14 13 12 16 16 C 1.50708 * 125.94876 * 179.75402 * 15 14 13 17 17 O 1.42895 * 109.46806 * 299.96926 * 16 15 14 18 18 Si 1.86301 * 109.46935 * 179.97438 * 16 15 14 19 19 S 1.70966 * 124.94848 * 180.02562 * 12 11 9 20 20 C 1.52997 * 109.47131 * 60.00459 * 9 8 7 21 21 C 1.52999 * 109.46991 * 299.99311 * 20 9 8 22 22 H 0.96994 * 119.99774 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99729 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99920 * 359.97438 * 4 2 1 25 25 H 1.09002 * 109.47153 * 299.99911 * 7 5 4 26 26 H 1.08996 * 109.46952 * 60.00083 * 7 5 4 27 27 H 1.08996 * 109.47407 * 60.00219 * 8 7 5 28 28 H 1.09000 * 109.46986 * 179.97438 * 8 7 5 29 29 H 0.96994 * 119.99768 * 334.99990 * 11 9 8 30 30 H 1.08001 * 122.70737 * 180.22395 * 14 13 12 31 31 H 1.08997 * 109.46788 * 59.97235 * 16 15 14 32 32 H 0.96699 * 113.99837 * 180.02562 * 17 16 15 33 33 H 1.48504 * 109.99670 * 298.67703 * 18 16 15 34 34 H 1.48501 * 109.99952 * 59.99657 * 18 16 15 35 35 H 1.09002 * 109.47153 * 179.97438 * 20 9 8 36 36 H 1.08993 * 109.47194 * 60.00154 * 20 9 8 37 37 H 1.08993 * 109.47839 * 300.00447 * 21 20 9 38 38 H 1.09000 * 109.47160 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9557 1.0530 0.0000 4 7 2.0217 -1.1672 -0.0005 5 6 3.4867 -1.1672 -0.0011 6 1 3.8499 -0.3253 -0.5905 7 6 3.9972 -1.0419 1.4357 8 6 5.5272 -1.0412 1.4350 9 6 6.0374 -2.3482 0.8247 10 1 5.6747 -3.1903 1.4141 11 7 7.5025 -2.3478 0.8246 12 6 8.1958 -3.5481 0.8239 13 7 7.6470 -4.7231 0.8291 14 6 8.4621 -5.7629 0.8237 15 6 9.7584 -5.4512 0.8236 16 6 10.9039 -6.4306 0.8234 17 8 10.8285 -7.2519 1.9903 18 14 12.5173 -5.4992 0.8227 19 16 9.8991 -3.6952 0.8244 20 6 5.5269 -2.4735 -0.6121 21 6 3.9969 -2.4742 -0.6114 22 1 -0.4849 -0.8400 0.0004 23 1 -0.4849 0.8400 0.0004 24 1 1.5367 -2.0072 -0.0005 25 1 3.6341 -0.1106 1.8704 26 1 3.6341 -1.8838 2.0251 27 1 5.8900 -0.1991 0.8458 28 1 5.8910 -0.9515 2.4586 29 1 7.9873 -1.5077 0.8250 30 1 8.1070 -6.7828 0.8237 31 1 10.8457 -7.0574 -0.0665 32 1 11.5366 -7.9071 2.0565 33 1 12.6219 -4.6655 -0.4018 34 1 12.6087 -4.6408 2.0310 35 1 5.8908 -3.4044 -1.0471 36 1 5.8897 -1.6314 -1.2013 37 1 3.6341 -3.3163 -0.0222 38 1 3.6332 -2.5640 -1.6350 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567490_15704118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:00:11 Heat of formation + Delta-G solvation = -21.712690 kcal Electronic energy + Delta-G solvation = -21830.333290 eV Core-core repulsion = 18414.536221 eV Total energy + Delta-G solvation = -3415.797069 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31674 -40.81027 -39.52601 -37.80028 -36.55886 -34.93523 -33.82523 -31.93423 -31.52593 -29.33591 -26.57032 -24.78725 -23.88930 -23.43868 -21.95371 -21.42644 -20.61633 -19.66660 -19.13140 -18.41954 -18.33854 -17.59678 -16.98199 -16.27590 -16.16500 -16.07121 -15.78782 -15.60927 -15.37865 -15.13194 -14.77368 -14.66222 -14.36122 -14.12837 -13.78947 -13.30227 -12.96025 -12.66198 -12.54863 -12.37351 -12.21479 -12.17636 -12.00138 -11.50526 -11.39039 -11.12225 -10.76729 -10.73312 -10.40700 -10.21130 -9.99596 -8.83711 -5.18908 -0.17549 -0.03571 0.52662 1.24719 1.57305 1.87841 1.88295 1.93454 2.09530 2.14106 3.47951 3.52034 3.57749 3.64137 3.66693 3.88903 3.98181 4.09091 4.12524 4.31530 4.33911 4.40419 4.49955 4.62047 4.64192 4.69217 4.84569 5.01085 5.02882 5.05458 5.07331 5.23776 5.28106 5.52225 5.76679 5.87569 6.01377 6.03726 6.86006 6.93771 7.07540 7.63250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.697 3.303 3 O -0.647 6.647 4 N -0.729 5.729 5 C 0.164 3.836 6 H 0.068 0.932 7 C -0.119 4.119 8 C -0.117 4.117 9 C 0.165 3.835 10 H 0.082 0.918 11 N -0.682 5.682 12 C 0.331 3.669 13 N -0.566 5.566 14 C 0.112 3.888 15 C -0.275 4.275 16 C -0.021 4.021 17 O -0.563 6.563 18 Si 0.754 3.246 19 S 0.046 5.954 20 C -0.119 4.119 21 C -0.111 4.111 22 H 0.414 0.586 23 H 0.419 0.581 24 H 0.413 0.587 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.422 0.578 30 H 0.190 0.810 31 H 0.107 0.893 32 H 0.405 0.595 33 H -0.275 1.275 34 H -0.287 1.287 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -5.525 -1.295 5.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.395 3.605 3 O -0.529 6.529 4 N -0.386 5.386 5 C 0.058 3.942 6 H 0.086 0.914 7 C -0.158 4.158 8 C -0.156 4.156 9 C 0.058 3.942 10 H 0.100 0.900 11 N -0.321 5.321 12 C -0.040 4.040 13 N -0.292 5.292 14 C -0.038 4.038 15 C -0.397 4.397 16 C -0.134 4.134 17 O -0.373 6.373 18 Si 0.658 3.342 19 S 0.294 5.706 20 C -0.159 4.159 21 C -0.150 4.150 22 H 0.245 0.755 23 H 0.251 0.749 24 H 0.249 0.751 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.260 0.740 30 H 0.207 0.793 31 H 0.124 0.876 32 H 0.257 0.743 33 H -0.201 1.201 34 H -0.214 1.214 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.433 -2.947 -1.187 3.206 hybrid contribution -1.296 -0.621 -0.005 1.437 sum -0.863 -3.568 -1.192 3.859 Atomic orbital electron populations 1.42869 1.04257 1.13844 1.81075 1.16269 0.82971 0.84100 0.77166 1.90948 1.69124 1.32432 1.60426 1.45025 1.07054 1.07172 1.79301 1.20820 0.78208 0.98916 0.96254 0.91353 1.21793 0.94541 1.02506 0.96968 1.21701 0.95523 0.96406 1.01981 1.21075 0.77200 0.99099 0.96794 0.89991 1.44289 1.06306 1.02576 1.78938 1.23949 0.92476 0.90970 0.96616 1.66483 1.37485 0.96866 1.28373 1.21592 0.87463 0.98631 0.96152 1.24633 0.98903 0.94072 1.22065 1.23806 1.02248 0.95486 0.91893 1.86459 1.56252 1.52289 1.42326 0.94256 0.80534 0.81736 0.77635 1.84168 1.05617 1.05484 1.75330 1.21809 0.95175 1.02509 0.96423 1.21656 0.94816 0.96291 1.02199 0.75525 0.74895 0.75082 0.92530 0.90486 0.90629 0.90498 0.73960 0.79315 0.87583 0.74333 1.20089 1.21437 0.91824 0.91394 0.89819 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.36 8.88 -184.74 -1.64 1.72 16 2 C 0.70 2.97 8.80 179.05 1.58 4.55 16 3 O -0.65 -9.76 16.84 -3.98 -0.07 -9.83 16 4 N -0.73 1.34 5.08 -457.81 -2.33 -0.99 16 5 C 0.16 -0.07 2.45 44.99 0.11 0.04 16 6 H 0.07 0.32 7.58 -2.39 -0.02 0.30 16 7 C -0.12 0.04 5.49 30.59 0.17 0.21 16 8 C -0.12 0.21 5.39 30.59 0.16 0.37 16 9 C 0.16 -0.06 2.59 44.99 0.12 0.05 16 10 H 0.08 0.20 7.76 -2.39 -0.02 0.19 16 11 N -0.68 -0.80 5.23 -330.39 -1.73 -2.53 16 12 C 0.33 2.03 8.06 179.32 1.45 3.47 16 13 N -0.57 -4.73 9.90 -202.02 -2.00 -6.73 16 14 C 0.11 0.75 11.22 83.54 0.94 1.69 16 15 C -0.27 -1.63 5.78 24.58 0.14 -1.49 16 16 C -0.02 0.01 2.98 71.24 0.21 0.22 16 17 O -0.56 0.25 12.84 -148.98 -1.91 -1.66 16 18 Si 0.75 -0.79 31.05 68.60 2.13 1.34 16 19 S 0.05 0.29 20.57 -56.49 -1.16 -0.87 16 20 C -0.12 0.13 5.51 30.59 0.17 0.30 16 21 C -0.11 0.41 5.39 30.60 0.17 0.57 16 22 H 0.41 -4.51 8.84 -92.71 -0.82 -5.33 16 23 H 0.42 -1.85 8.93 -92.71 -0.83 -2.67 16 24 H 0.41 -3.40 8.62 -92.71 -0.80 -4.20 16 25 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.42 -1.05 8.73 -92.71 -0.81 -1.86 16 30 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 31 H 0.11 -0.55 7.96 -2.39 -0.02 -0.57 16 32 H 0.40 -4.60 8.74 -74.06 -0.65 -5.25 16 33 H -0.27 -1.15 7.11 99.48 0.71 -0.44 16 34 H -0.29 -1.99 7.11 99.48 0.71 -1.28 16 35 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 Total: 0.00 -24.96 328.63 -6.23 -31.18 By element: Atomic # 1 Polarization: -18.90 SS G_CDS: -2.72 Total: -21.62 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.21 Total: 9.99 kcal Atomic # 7 Polarization: -0.84 SS G_CDS: -7.70 Total: -8.53 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.98 Total: -11.50 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: 2.13 Total: 1.34 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.16 Total: -0.87 kcal Total: -24.96 -6.23 -31.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567490_15704118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.472 kcal (2) G-P(sol) polarization free energy of solvation -24.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds