Wall clock time and date at job start Mon Mar 8 2021 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33317 * 125.95377 * 2 1 4 4 C 1.50706 * 122.71096 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.46702 * 329.73140 * 4 3 2 6 6 Si 1.86301 * 109.47233 * 209.73429 * 4 3 2 7 7 N 1.32124 * 114.58070 * 179.75438 * 3 2 1 8 8 C 1.29679 * 116.86669 * 0.24872 * 7 3 2 9 9 N 1.38605 * 124.95288 * 180.02562 * 8 7 3 10 10 C 1.46502 * 120.00668 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46612 * 34.99608 * 10 9 8 12 12 C 1.52994 * 109.47408 * 154.99841 * 10 9 8 13 13 C 1.52997 * 109.47073 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47359 * 299.99896 * 13 12 10 15 15 H 1.09003 * 109.47543 * 300.00019 * 14 13 12 16 16 N 1.46505 * 109.47469 * 179.97438 * 14 13 12 17 17 C 1.34774 * 119.99916 * 155.00003 * 16 14 13 18 18 N 1.34773 * 119.99827 * 180.02562 * 17 16 14 19 19 O 1.21593 * 120.00030 * 0.02562 * 17 16 14 20 20 C 1.53001 * 109.47197 * 60.00037 * 14 13 12 21 21 C 1.52998 * 109.46860 * 275.00143 * 10 9 8 22 22 S 1.70968 * 110.10327 * 359.97438 * 8 7 3 23 23 H 1.09000 * 109.47364 * 90.00113 * 1 2 3 24 24 H 1.09002 * 109.46944 * 210.00161 * 1 2 3 25 25 H 1.09001 * 109.46724 * 329.99627 * 1 2 3 26 26 H 1.09000 * 109.47318 * 89.72719 * 4 3 2 27 27 H 0.96698 * 113.99410 * 179.97438 * 5 4 3 28 28 H 1.48497 * 109.99842 * 59.99960 * 6 4 3 29 29 H 1.48502 * 109.99925 * 181.31722 * 6 4 3 30 30 H 0.97005 * 119.99890 * 359.97438 * 9 8 7 31 31 H 1.09003 * 109.47040 * 300.00305 * 12 10 9 32 32 H 1.08992 * 109.47351 * 60.00204 * 12 10 9 33 33 H 1.09004 * 109.47323 * 60.00428 * 13 12 10 34 34 H 1.09009 * 109.47185 * 179.97438 * 13 12 10 35 35 H 0.97002 * 119.99396 * 335.00414 * 16 14 13 36 36 H 0.97001 * 120.00248 * 359.97438 * 18 17 16 37 37 H 0.97006 * 120.00125 * 179.97438 * 18 17 16 38 38 H 1.09002 * 109.47308 * 59.99917 * 20 14 13 39 39 H 1.09000 * 109.47629 * 180.02562 * 20 14 13 40 40 H 1.09002 * 109.47071 * 299.99184 * 21 10 9 41 41 H 1.08997 * 109.47507 * 59.99756 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4840 2.5034 -0.6781 6 14 2.9359 3.6166 -0.8707 7 7 3.5851 0.8187 0.0052 8 6 3.9315 -0.4310 0.0045 9 7 5.2384 -0.8927 0.0098 10 6 5.5066 -2.3330 0.0090 11 1 4.7481 -2.8434 -0.5846 12 6 6.8879 -2.5943 -0.5946 13 6 7.1676 -4.0985 -0.5961 14 6 7.1306 -4.6255 0.8397 15 1 7.8890 -4.1155 1.4337 16 7 7.3979 -6.0659 0.8384 17 6 7.9083 -6.6576 1.9364 18 7 8.1547 -7.9827 1.9349 19 8 8.1467 -5.9960 2.9284 20 6 5.7492 -4.3642 1.4435 21 6 5.4697 -2.8594 1.4451 22 16 2.5413 -1.4262 -0.0026 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6051 2.8194 1.0283 27 1 0.0717 3.3772 -0.7159 28 1 3.1302 3.1686 -2.2731 29 1 2.4217 5.0096 -0.8492 30 1 5.9755 -0.2622 0.0141 31 1 6.9141 -2.2192 -1.6178 32 1 7.6463 -2.0839 -0.0010 33 1 6.4092 -4.6085 -1.1900 34 1 8.1516 -4.2847 -1.0266 35 1 7.2074 -6.5937 0.0471 36 1 7.9642 -8.5105 1.1437 37 1 8.5225 -8.4085 2.7251 38 1 4.9907 -4.8743 0.8496 39 1 5.7229 -4.7393 2.4666 40 1 6.2281 -2.3490 2.0388 41 1 4.4856 -2.6733 1.8752 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567490_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:00:14 Heat of formation + Delta-G solvation = -24.167241 kcal Electronic energy + Delta-G solvation = -23899.556349 eV Core-core repulsion = 20328.115223 eV Total energy + Delta-G solvation = -3571.441125 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26187 -40.95517 -39.69171 -37.86972 -36.57002 -34.91404 -33.93507 -32.55451 -31.87055 -29.82924 -28.49128 -25.63881 -24.54757 -23.93546 -23.18166 -21.92492 -21.43663 -20.20332 -19.34382 -19.10086 -18.30709 -18.23784 -17.30515 -16.86576 -16.40886 -16.23107 -16.12661 -15.72625 -15.62632 -15.38102 -15.09113 -14.89228 -14.22235 -14.11495 -14.00124 -13.86760 -13.63981 -13.39521 -13.23588 -12.99385 -12.66581 -12.61931 -12.35313 -12.16518 -11.75957 -11.63308 -11.51952 -11.45020 -11.03509 -10.70392 -10.68097 -10.41798 -10.00808 -9.94645 -8.60751 -4.78380 -0.00579 0.15460 0.74330 1.28054 1.60910 1.81908 1.85198 1.99705 2.05554 2.18070 3.08597 3.56461 3.60748 3.65985 3.89308 3.95329 4.06436 4.10621 4.16151 4.29385 4.35247 4.36336 4.40839 4.44837 4.62890 4.74583 4.81503 4.84506 4.93103 5.05784 5.09482 5.11981 5.12471 5.24434 5.30132 5.32035 5.57494 5.68164 5.91279 6.04745 6.36149 6.62483 6.90700 7.12077 7.67278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.256 4.256 3 C 0.088 3.912 4 C -0.043 4.043 5 O -0.546 6.546 6 Si 0.775 3.225 7 N -0.561 5.561 8 C 0.316 3.684 9 N -0.682 5.682 10 C 0.153 3.847 11 H 0.087 0.913 12 C -0.116 4.116 13 C -0.113 4.113 14 C 0.161 3.839 15 H 0.067 0.933 16 N -0.728 5.728 17 C 0.696 3.304 18 N -0.852 5.852 19 O -0.648 6.648 20 C -0.120 4.120 21 C -0.128 4.128 22 S 0.114 5.886 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.398 0.602 28 H -0.319 1.319 29 H -0.274 1.274 30 H 0.418 0.582 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.413 0.587 36 H 0.414 0.586 37 H 0.418 0.582 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -4.465 -3.100 5.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.379 4.379 3 C -0.041 4.041 4 C -0.155 4.155 5 O -0.356 6.356 6 Si 0.681 3.319 7 N -0.289 5.289 8 C -0.056 4.056 9 N -0.322 5.322 10 C 0.049 3.951 11 H 0.105 0.895 12 C -0.154 4.154 13 C -0.151 4.151 14 C 0.055 3.945 15 H 0.085 0.915 16 N -0.385 5.385 17 C 0.394 3.606 18 N -0.421 5.421 19 O -0.531 6.531 20 C -0.160 4.160 21 C -0.168 4.168 22 S 0.362 5.638 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.249 0.751 28 H -0.248 1.248 29 H -0.201 1.201 30 H 0.257 0.743 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.245 0.755 37 H 0.250 0.750 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.653 -4.747 -3.102 5.906 hybrid contribution -1.107 0.660 -0.299 1.323 sum 0.546 -4.087 -3.401 5.345 Atomic orbital electron populations 1.20059 0.85851 1.02827 1.02420 1.25385 1.02215 0.93342 1.16964 1.19117 0.86839 0.95927 1.02249 1.24035 0.92274 0.96862 1.02367 1.86542 1.33124 1.36684 1.79202 0.93005 0.86619 0.73671 0.78635 1.65641 1.16942 1.17364 1.28924 1.23460 0.92860 0.91176 0.98086 1.44156 1.00988 1.07700 1.79339 1.21285 0.99449 0.77975 0.96416 0.89541 1.21682 0.94393 0.96651 1.02686 1.21699 1.04387 0.94831 0.94213 1.20864 0.96336 0.79412 0.97845 0.91473 1.45012 1.68365 1.09754 1.15335 1.16294 0.77929 0.82953 0.83427 1.42880 1.71095 1.06639 1.21495 1.90959 1.61617 1.64922 1.35560 1.21832 0.97505 0.95438 1.01199 1.21956 1.02385 0.95664 0.96816 1.83763 0.95981 1.09819 1.74208 0.91623 0.91660 0.89477 0.88176 0.75071 1.24797 1.20078 0.74279 0.89109 0.90160 0.89123 0.89305 0.74970 0.75513 0.74976 0.90154 0.93327 0.91400 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.20 8.96 71.24 0.64 0.44 16 2 C -0.26 -1.79 6.50 24.57 0.16 -1.63 16 3 C 0.09 0.70 5.95 41.40 0.25 0.94 16 4 C -0.04 -0.15 2.81 71.24 0.20 0.05 16 5 O -0.55 -1.29 9.88 -148.98 -1.47 -2.77 16 6 Si 0.77 3.08 32.09 68.60 2.20 5.28 16 7 N -0.56 -4.37 8.95 -189.87 -1.70 -6.07 16 8 C 0.32 1.44 8.22 179.32 1.47 2.91 16 9 N -0.68 0.80 5.23 -330.42 -1.73 -0.93 16 10 C 0.15 -0.73 2.40 44.99 0.11 -0.62 16 11 H 0.09 -0.43 7.26 -2.39 -0.02 -0.45 16 12 C -0.12 0.96 5.39 30.59 0.16 1.12 16 13 C -0.11 1.04 5.39 30.59 0.16 1.21 16 14 C 0.16 -0.53 2.45 44.99 0.11 -0.42 16 15 H 0.07 0.16 7.58 -2.39 -0.02 0.14 16 16 N -0.73 3.08 5.08 -457.81 -2.33 0.75 16 17 C 0.70 1.97 8.80 179.06 1.58 3.54 16 18 N -0.85 4.42 8.88 -184.75 -1.64 2.78 16 19 O -0.65 -9.19 16.84 -4.01 -0.07 -9.25 16 20 C -0.12 0.24 5.50 30.61 0.17 0.40 16 21 C -0.13 0.27 5.51 30.61 0.17 0.44 16 22 S 0.11 0.41 21.68 -56.49 -1.22 -0.82 16 23 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 25 H 0.09 0.26 6.63 -2.39 -0.02 0.25 16 26 H 0.10 -0.05 7.96 -2.39 -0.02 -0.07 16 27 H 0.40 -2.43 8.74 -74.06 -0.65 -3.08 16 28 H -0.32 -4.32 7.11 99.48 0.71 -3.62 16 29 H -0.27 -1.41 7.11 99.48 0.71 -0.70 16 30 H 0.42 -1.31 8.73 -92.70 -0.81 -2.12 16 31 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.09 -1.08 8.14 -2.38 -0.02 -1.10 16 34 H 0.09 -0.90 8.14 -2.38 -0.02 -0.92 16 35 H 0.41 -4.59 8.62 -92.71 -0.80 -5.39 16 36 H 0.41 -5.09 8.84 -92.71 -0.82 -5.91 16 37 H 0.42 -2.23 8.93 -92.70 -0.83 -3.05 16 38 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.06 0.01 8.04 -2.39 -0.02 -0.01 16 Total: 0.00 -24.55 345.32 -5.53 -30.08 By element: Atomic # 1 Polarization: -24.70 SS G_CDS: -2.75 Total: -27.46 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.18 Total: 8.40 kcal Atomic # 7 Polarization: 3.92 SS G_CDS: -7.39 Total: -3.47 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.54 Total: -12.02 kcal Atomic # 14 Polarization: 3.08 SS G_CDS: 2.20 Total: 5.28 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.22 Total: -0.82 kcal Total: -24.55 -5.53 -30.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567490_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.917 kcal (2) G-P(sol) polarization free energy of solvation -24.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds