Wall clock time and date at job start Mon Mar 8 2021 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34774 * 1 3 3 O 1.21592 * 119.99715 * 2 1 4 4 N 1.34775 * 120.00155 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99814 * 179.97438 * 4 2 1 6 6 H 1.08993 * 109.47513 * 325.00073 * 5 4 2 7 7 C 1.53000 * 109.46775 * 85.00548 * 5 4 2 8 8 C 1.53003 * 109.46948 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47334 * 299.99927 * 8 7 5 10 10 H 1.09006 * 109.46898 * 300.00077 * 9 8 7 11 11 N 1.46494 * 109.47513 * 180.02562 * 9 8 7 12 12 C 1.39140 * 120.00119 * 84.99357 * 11 9 8 13 13 N 1.32331 * 119.71745 * 359.97438 * 12 11 9 14 14 C 1.32016 * 121.64557 * 180.02562 * 13 12 11 15 15 C 1.37979 * 120.90322 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.33027 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46831 * 120.00385 * 16 15 14 18 18 Si 1.86296 * 109.46899 * 0.02562 * 16 15 14 19 19 C 1.38907 * 119.34592 * 359.77085 * 15 14 13 20 20 C 1.38452 * 118.48172 * 0.49369 * 19 15 14 21 21 F 1.35104 * 120.46982 * 179.75500 * 20 19 15 22 22 C 1.53005 * 109.47146 * 59.99490 * 9 8 7 23 23 C 1.52994 * 109.47247 * 300.00367 * 22 9 8 24 24 H 0.97003 * 120.00515 * 180.02562 * 1 2 3 25 25 H 0.97003 * 120.00382 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99506 * 0.02562 * 4 2 1 27 27 H 1.09003 * 109.47081 * 299.98991 * 7 5 4 28 28 H 1.08993 * 109.47488 * 59.99510 * 7 5 4 29 29 H 1.09001 * 109.47374 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47191 * 59.99825 * 8 7 5 31 31 H 0.97005 * 119.99697 * 265.00430 * 11 9 8 32 32 H 1.08004 * 119.55006 * 180.02562 * 14 13 12 33 33 H 1.08994 * 109.47283 * 240.00689 * 16 15 14 34 34 H 0.96698 * 113.99580 * 300.00126 * 17 16 15 35 35 H 1.48501 * 110.00021 * 179.97438 * 18 16 15 36 36 H 1.48507 * 110.00127 * 301.31868 * 18 16 15 37 37 H 1.08001 * 120.76394 * 180.25229 * 19 15 14 38 38 H 1.08998 * 109.46587 * 60.00234 * 22 9 8 39 39 H 1.08998 * 109.46949 * 179.97438 * 22 9 8 40 40 H 1.09001 * 109.47201 * 179.97438 * 23 22 9 41 41 H 1.09001 * 109.47447 * 300.00212 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9557 1.0531 0.0000 4 7 2.0216 -1.1672 0.0005 5 6 3.4866 -1.1671 0.0000 6 1 3.8497 -0.3257 -0.5901 7 6 3.9971 -1.0405 1.4367 8 6 5.5271 -1.0410 1.4362 9 6 6.0365 -2.3490 0.8274 10 1 5.6730 -3.1903 1.4176 11 7 7.5015 -2.3498 0.8275 12 6 8.1969 -2.7616 1.9601 13 7 7.5294 -3.1508 3.0344 14 6 8.1503 -3.5483 4.1294 15 6 9.5284 -3.5728 4.1934 16 6 10.2240 -4.0284 5.4502 17 8 11.0404 -5.1642 5.1578 18 14 8.9524 -4.4914 6.7306 19 6 10.2684 -3.1774 3.0863 20 6 9.5903 -2.7601 1.9537 21 9 10.2700 -2.3623 0.8559 22 6 5.5259 -2.4757 -0.6094 23 6 3.9960 -2.4752 -0.6088 24 1 -0.4851 -0.8400 0.0004 25 1 -0.4851 0.8400 0.0004 26 1 1.5366 -2.0072 0.0005 27 1 3.6340 -0.1088 1.8706 28 1 3.6340 -1.8819 2.0268 29 1 5.8909 -0.9504 2.4597 30 1 5.8906 -0.1998 0.8460 31 1 7.9867 -2.0632 0.0379 32 1 7.5718 -3.8593 4.9868 33 1 10.8482 -3.2211 5.8331 34 1 10.5499 -5.9225 4.8121 35 1 9.6255 -4.9430 7.9748 36 1 8.0762 -3.3278 7.0202 37 1 11.3481 -3.1915 3.1098 38 1 5.8894 -1.6345 -1.1995 39 1 5.8892 -3.4073 -1.0432 40 1 3.6322 -2.5650 -1.6324 41 1 3.6325 -3.3164 -0.0186 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17567490_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:00:18 Heat of formation + Delta-G solvation = -74.572286 kcal Electronic energy + Delta-G solvation = -25810.250730 eV Core-core repulsion = 21833.555275 eV Total energy + Delta-G solvation = -3976.695455 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.94920 -41.52206 -41.09274 -39.56847 -37.94830 -36.48089 -34.94138 -33.95956 -33.16604 -31.83477 -31.49512 -29.00755 -26.36975 -25.08412 -23.84308 -23.38793 -22.67626 -21.84847 -21.20272 -19.46718 -19.00117 -18.48993 -18.33524 -18.26690 -17.54954 -17.00884 -16.63234 -16.25399 -16.08450 -15.99508 -15.92882 -15.53456 -15.38598 -15.21368 -14.98162 -14.51238 -14.35072 -14.24161 -13.89364 -13.65154 -13.39891 -13.22067 -12.68834 -12.55832 -12.46729 -12.14975 -12.12121 -11.71261 -11.47247 -11.46135 -11.10634 -10.73732 -10.68766 -10.64940 -10.39815 -9.95668 -8.75295 -4.97112 -0.07564 0.11534 1.32658 1.66771 1.87885 2.00674 2.05762 2.16465 2.55522 3.03580 3.28728 3.50243 3.61505 3.66410 3.68055 3.69241 3.86715 3.98558 4.03663 4.15139 4.18753 4.40064 4.41547 4.45187 4.46823 4.49760 4.70608 4.72878 4.80437 4.96120 4.99496 5.08802 5.12573 5.14254 5.24450 5.32667 5.45605 5.56803 5.90473 6.00107 6.03395 6.20516 6.80274 6.96829 7.11439 7.65943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.696 3.304 3 O -0.650 6.650 4 N -0.728 5.728 5 C 0.162 3.838 6 H 0.062 0.938 7 C -0.117 4.117 8 C -0.119 4.119 9 C 0.162 3.838 10 H 0.094 0.906 11 N -0.711 5.711 12 C 0.384 3.616 13 N -0.522 5.522 14 C 0.147 3.853 15 C -0.207 4.207 16 C -0.059 4.059 17 O -0.556 6.556 18 Si 0.777 3.223 19 C -0.041 4.041 20 C -0.040 4.040 21 F -0.142 7.142 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.414 0.586 25 H 0.418 0.582 26 H 0.414 0.586 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.415 0.585 32 H 0.183 0.817 33 H 0.109 0.891 34 H 0.396 0.604 35 H -0.297 1.297 36 H -0.280 1.280 37 H 0.152 0.848 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -7.535 -1.110 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.394 3.606 3 O -0.532 6.532 4 N -0.384 5.384 5 C 0.057 3.943 6 H 0.081 0.919 7 C -0.157 4.157 8 C -0.159 4.159 9 C 0.058 3.942 10 H 0.112 0.888 11 N -0.343 5.343 12 C 0.146 3.854 13 N -0.239 5.239 14 C -0.010 4.010 15 C -0.212 4.212 16 C -0.170 4.170 17 O -0.364 6.364 18 Si 0.682 3.318 19 C -0.067 4.067 20 C -0.066 4.066 21 F -0.121 7.121 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.245 0.755 25 H 0.250 0.750 26 H 0.251 0.749 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.252 0.748 32 H 0.199 0.801 33 H 0.127 0.873 34 H 0.246 0.754 35 H -0.225 1.225 36 H -0.207 1.207 37 H 0.170 0.830 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.635 -6.198 -0.217 8.379 hybrid contribution 1.197 0.798 -0.617 1.566 sum -4.437 -5.400 -0.834 7.039 Atomic orbital electron populations 1.42864 1.04236 1.13839 1.81087 1.16303 0.82978 0.84179 0.77172 1.90956 1.69189 1.32619 1.60487 1.45006 1.07058 1.07095 1.79221 1.20842 0.78135 0.99340 0.96011 0.91932 1.21784 0.94849 1.01914 0.97120 1.21813 0.95092 0.98001 1.01005 1.20997 0.77755 0.97890 0.97557 0.88800 1.44744 1.06692 1.70183 1.12715 1.18562 0.86366 0.91614 0.88883 1.67356 1.39026 1.17904 0.99640 1.22699 0.91278 0.92292 0.94730 1.20978 0.94542 1.07881 0.97843 1.24993 1.01658 0.90971 0.99361 1.86477 1.37939 1.24512 1.87449 0.93813 0.77701 0.84637 0.75629 1.21412 1.01865 0.93144 0.90315 1.18167 0.89274 1.12349 0.86808 1.91465 1.79772 1.89268 1.51573 1.21727 0.95489 1.03826 0.94780 1.21672 0.94637 0.95994 1.02577 0.75459 0.74969 0.74907 0.93940 0.90161 0.92607 0.92847 0.74772 0.80056 0.87325 0.75388 1.22521 1.20731 0.83017 0.91146 0.89303 0.89539 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.62 8.88 -184.75 -1.64 1.98 16 2 C 0.70 2.92 8.80 179.06 1.58 4.49 16 3 O -0.65 -10.26 16.84 -4.01 -0.07 -10.32 16 4 N -0.73 1.95 5.08 -457.81 -2.33 -0.38 16 5 C 0.16 -0.18 2.45 44.99 0.11 -0.07 16 6 H 0.06 0.31 7.58 -2.39 -0.02 0.29 16 7 C -0.12 -0.09 5.49 30.60 0.17 0.07 16 8 C -0.12 -0.15 5.51 30.60 0.17 0.02 16 9 C 0.16 -0.37 2.47 44.99 0.11 -0.26 16 10 H 0.09 -0.15 7.54 -2.38 -0.02 -0.17 16 11 N -0.71 0.01 5.23 -324.29 -1.69 -1.68 16 12 C 0.38 1.21 7.47 133.09 0.99 2.20 16 13 N -0.52 -1.30 9.20 -193.04 -1.78 -3.07 16 14 C 0.15 -0.14 9.84 84.60 0.83 0.69 16 15 C -0.21 0.17 5.40 -19.77 -0.11 0.06 16 16 C -0.06 0.14 2.84 71.24 0.20 0.35 16 17 O -0.56 0.92 12.77 -148.98 -1.90 -0.98 16 18 Si 0.78 -3.42 29.82 68.60 2.05 -1.37 16 19 C -0.04 -0.07 9.75 22.48 0.22 0.15 16 20 C -0.04 -0.16 7.35 22.59 0.17 0.01 16 21 F -0.14 -0.79 16.65 44.97 0.75 -0.04 16 22 C -0.12 0.72 5.39 30.59 0.16 0.89 16 23 C -0.11 0.81 5.39 30.60 0.16 0.97 16 24 H 0.41 -4.79 8.84 -92.71 -0.82 -5.61 16 25 H 0.42 -1.88 8.93 -92.71 -0.83 -2.71 16 26 H 0.41 -4.09 8.62 -92.71 -0.80 -4.88 16 27 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.05 0.18 8.14 -2.38 -0.02 0.17 16 31 H 0.41 -0.69 8.08 -92.70 -0.75 -1.44 16 32 H 0.18 -1.11 4.88 -2.91 -0.01 -1.12 16 33 H 0.11 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.40 -3.86 8.70 -74.06 -0.64 -4.50 16 35 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 36 H -0.28 -0.03 7.11 99.48 0.71 0.68 16 37 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 Total: 0.00 -23.89 341.14 -4.52 -28.41 By element: Atomic # 1 Polarization: -19.44 SS G_CDS: -2.67 Total: -22.12 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 4.77 Total: 9.58 kcal Atomic # 7 Polarization: 4.28 SS G_CDS: -7.44 Total: -3.15 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -1.97 Total: -11.30 kcal Atomic # 9 Polarization: -0.79 SS G_CDS: 0.75 Total: -0.04 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.05 Total: -1.37 kcal Total: -23.89 -4.52 -28.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17567490_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.161 kcal (2) G-P(sol) polarization free energy of solvation -23.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds