Wall clock time and date at job start Mon Mar 8 2021 08:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46774 * 2 1 4 4 C 1.52997 * 109.47061 * 240.00154 * 2 1 3 5 5 O 1.45203 * 109.47240 * 120.00045 * 2 1 3 6 6 C 1.34229 * 116.99579 * 59.99972 * 5 2 1 7 7 O 1.20825 * 120.00650 * 359.97438 * 6 5 2 8 8 C 1.50703 * 119.99682 * 180.02562 * 6 5 2 9 9 H 1.09002 * 109.47152 * 300.00157 * 8 6 5 10 10 C 1.53002 * 109.47292 * 60.00212 * 8 6 5 11 11 C 1.53001 * 109.46963 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.46886 * 299.99499 * 11 10 8 13 13 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 12 11 10 15 15 C 1.38413 * 119.99819 * 85.00516 * 14 12 11 16 16 N 1.32485 * 119.21615 * 359.72892 * 15 14 12 17 17 C 1.32278 * 120.73816 * 179.72076 * 16 15 14 18 18 C 1.38602 * 119.19924 * 0.54292 * 17 16 15 19 19 C 1.50697 * 120.72519 * 179.70871 * 18 17 16 20 20 O 1.42896 * 109.47287 * 245.02557 * 19 18 17 21 21 Si 1.86310 * 109.47053 * 5.02239 * 19 18 17 22 22 C 1.38603 * 118.55591 * 359.73225 * 18 17 16 23 23 N 1.32275 * 119.19921 * 359.97438 * 22 18 17 24 24 C 1.53002 * 109.47233 * 60.00670 * 12 11 10 25 25 C 1.52997 * 109.47084 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.47115 * 299.99735 * 1 2 3 27 27 H 1.08998 * 109.47349 * 59.99945 * 1 2 3 28 28 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46656 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47463 * 299.99669 * 3 2 1 31 31 H 1.09000 * 109.47083 * 60.00246 * 3 2 1 32 32 H 1.09001 * 109.47231 * 299.99975 * 4 2 1 33 33 H 1.08998 * 109.47120 * 59.99760 * 4 2 1 34 34 H 1.09003 * 109.47003 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46497 * 300.00140 * 10 8 6 36 36 H 1.09002 * 109.47067 * 59.99892 * 10 8 6 37 37 H 1.09001 * 109.46652 * 179.97438 * 11 10 8 38 38 H 1.08992 * 109.47514 * 59.99933 * 11 10 8 39 39 H 0.97002 * 120.00410 * 264.99761 * 14 12 11 40 40 H 1.08004 * 120.40174 * 180.29325 * 17 16 15 41 41 H 1.08998 * 109.47058 * 125.02079 * 19 18 17 42 42 H 0.96697 * 114.00563 * 59.99566 * 20 19 18 43 43 H 1.48493 * 110.00044 * 180.02562 * 21 19 18 44 44 H 1.48507 * 109.99758 * 301.32017 * 21 19 18 45 45 H 1.07995 * 120.40179 * 179.97438 * 22 18 17 46 46 H 1.09002 * 109.47075 * 59.99068 * 24 12 11 47 47 H 1.08996 * 109.47407 * 180.02562 * 24 12 11 48 48 H 1.09001 * 109.47375 * 60.00042 * 25 8 6 49 49 H 1.09002 * 109.47497 * 299.99683 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3378 7 8 0.9559 -2.5025 0.5082 8 6 2.1173 -2.7435 2.5441 9 1 3.2069 -2.7723 2.5604 10 6 1.6061 -2.0627 3.8153 11 6 2.0777 -2.8492 5.0400 12 6 1.5312 -4.2766 4.9708 13 1 0.4417 -4.2482 4.9547 14 7 1.9823 -5.0296 6.1438 15 6 1.2708 -4.9563 7.3288 16 7 0.1872 -4.1963 7.3865 17 6 -0.5185 -4.1086 8.5019 18 6 -0.1052 -4.8146 9.6207 19 6 -0.8795 -4.7345 10.9111 20 8 -0.0726 -4.1123 11.9129 21 14 -2.4255 -3.7291 10.6462 22 6 1.0360 -5.5956 9.5271 23 7 1.6925 -5.6441 8.3798 24 6 2.0425 -4.9575 3.6996 25 6 1.5709 -4.1708 2.4743 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.9957 -1.0459 3.8647 36 1 0.5165 -2.0339 3.7990 37 1 1.7138 -2.3639 5.9457 38 1 3.1671 -2.8777 5.0561 39 1 2.7796 -5.5795 6.0900 40 1 -1.4037 -3.4911 8.5415 41 1 -1.1506 -5.7393 11.2351 42 1 0.2062 -3.2133 11.6912 43 1 -3.1978 -3.6421 11.9116 44 1 -2.0707 -2.3668 10.1735 45 1 1.3850 -6.1578 10.3806 46 1 3.1320 -4.9858 3.7157 47 1 1.6528 -5.9742 3.6501 48 1 1.9355 -4.6556 1.5687 49 1 0.4814 -4.1425 2.4578 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17607844_12175864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:01 Heat of formation + Delta-G solvation = -63.796740 kcal Electronic energy + Delta-G solvation = -29554.837658 eV Core-core repulsion = 25483.731922 eV Total energy + Delta-G solvation = -4071.105736 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.17801 -41.98985 -39.88050 -38.26774 -37.88134 -36.09834 -35.03837 -34.71703 -32.82991 -31.83670 -30.49844 -28.41893 -28.33771 -26.74485 -25.93467 -24.93159 -23.77018 -23.22188 -22.32499 -21.12359 -20.50072 -19.34201 -18.71836 -18.23278 -18.13611 -17.57712 -17.15068 -16.55990 -16.55519 -16.10916 -15.81354 -15.76433 -15.56347 -15.43550 -15.15129 -14.83026 -14.67071 -14.58311 -14.13726 -14.00536 -13.69762 -13.43287 -13.27166 -13.17997 -13.15503 -12.96677 -12.89659 -12.66687 -12.59521 -12.35423 -12.26390 -12.16528 -12.05215 -11.90440 -11.80544 -11.70637 -11.42833 -11.38259 -11.05703 -10.89442 -10.68336 -10.03192 -9.09789 -4.90529 0.06560 0.15512 1.18139 1.32377 1.59986 1.65337 1.84233 1.98094 2.80232 3.17201 3.42903 3.47026 3.56671 3.62260 3.67558 3.70308 3.74251 3.75806 3.81486 3.92139 3.96384 4.09582 4.19823 4.23134 4.32744 4.35271 4.43794 4.54634 4.55955 4.62713 4.66117 4.72073 4.75711 4.79230 4.81239 4.83764 4.88334 4.93944 5.05389 5.08305 5.10029 5.13717 5.20895 5.22074 5.25234 5.27526 5.39653 5.56476 5.79059 6.06268 6.42885 6.49884 6.79825 7.29380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.465 3.535 7 O -0.525 6.525 8 C -0.078 4.078 9 H 0.126 0.874 10 C -0.098 4.098 11 C -0.118 4.118 12 C 0.162 3.838 13 H 0.081 0.919 14 N -0.687 5.687 15 C 0.554 3.446 16 N -0.576 5.576 17 C 0.191 3.809 18 C -0.284 4.284 19 C -0.055 4.055 20 O -0.547 6.547 21 Si 0.757 3.243 22 C 0.213 3.787 23 N -0.590 5.590 24 C -0.117 4.117 25 C -0.093 4.093 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.419 0.581 40 H 0.184 0.816 41 H 0.131 0.869 42 H 0.385 0.615 43 H -0.300 1.300 44 H -0.279 1.279 45 H 0.182 0.818 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 1.099 -1.126 1.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.273 6.273 6 C 0.310 3.690 7 O -0.414 6.414 8 C -0.097 4.097 9 H 0.144 0.856 10 C -0.137 4.137 11 C -0.157 4.157 12 C 0.057 3.943 13 H 0.100 0.900 14 N -0.323 5.323 15 C 0.197 3.803 16 N -0.298 5.298 17 C 0.024 3.976 18 C -0.293 4.293 19 C -0.166 4.166 20 O -0.355 6.355 21 Si 0.662 3.338 22 C 0.046 3.954 23 N -0.312 5.312 24 C -0.155 4.155 25 C -0.131 4.131 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.257 0.743 40 H 0.200 0.800 41 H 0.149 0.851 42 H 0.234 0.766 43 H -0.228 1.228 44 H -0.205 1.205 45 H 0.199 0.801 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.056 1.163 -1.951 2.272 hybrid contribution 0.654 0.487 1.041 1.322 sum 0.598 1.650 -0.909 1.976 Atomic orbital electron populations 1.22458 0.94078 1.03596 1.03626 1.22411 0.94477 0.93253 0.82671 1.21877 1.02395 0.91300 1.04014 1.22460 1.01807 1.02107 0.97389 1.86556 1.69696 1.25435 1.45578 1.24079 0.76767 0.80653 0.87538 1.90590 1.36114 1.70359 1.44357 1.21252 1.03951 0.94394 0.90087 0.85602 1.21390 1.01312 0.99570 0.91378 1.21839 1.01534 0.94828 0.97452 1.21023 0.99865 0.90375 0.83025 0.90050 1.44321 1.29630 1.51397 1.06933 1.19647 0.86740 0.86650 0.87226 1.67979 1.08865 1.23582 1.29405 1.23195 0.95955 0.91987 0.86455 1.21662 1.02361 1.06120 0.99133 1.24833 1.00705 1.05537 0.85519 1.86588 1.70440 1.33889 1.44552 0.94263 0.77275 0.79305 0.82942 1.23149 0.88250 0.90523 0.93506 1.68012 1.35580 1.26731 1.00882 1.21756 1.02621 0.99460 0.91633 1.21314 1.01402 0.92014 0.98408 0.91764 0.89693 0.91804 0.91231 0.88823 0.91265 0.91779 0.89687 0.91714 0.89975 0.91642 0.92214 0.90585 0.74310 0.79971 0.85089 0.76588 1.22784 1.20527 0.80067 0.89365 0.90134 0.90473 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.39 8.37 71.98 0.60 0.21 16 2 C 0.11 0.20 1.13 -10.79 -0.01 0.19 16 3 C -0.14 0.32 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.36 8.37 71.98 0.60 0.25 16 5 O -0.36 -1.29 9.79 -51.41 -0.50 -1.79 16 6 C 0.47 1.70 6.57 71.24 0.47 2.16 16 7 O -0.52 -4.43 11.48 21.97 0.25 -4.18 16 8 C -0.08 0.17 2.63 -11.54 -0.03 0.14 16 9 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 10 C -0.10 0.25 5.14 30.60 0.16 0.41 16 11 C -0.12 0.30 5.51 30.59 0.17 0.47 16 12 C 0.16 -0.35 2.44 44.99 0.11 -0.24 16 13 H 0.08 0.09 7.51 -2.39 -0.02 0.07 16 14 N -0.69 0.00 5.22 -330.43 -1.73 -1.73 16 15 C 0.55 2.48 8.40 261.49 2.20 4.68 16 16 N -0.58 -2.30 9.20 -197.98 -1.82 -4.12 16 17 C 0.19 0.02 9.92 84.71 0.84 0.86 16 18 C -0.28 0.25 5.36 -19.69 -0.11 0.15 16 19 C -0.06 0.18 2.83 71.24 0.20 0.38 16 20 O -0.55 -0.01 12.85 -148.98 -1.91 -1.92 16 21 Si 0.76 -3.06 29.95 68.60 2.05 -1.01 16 22 C 0.21 0.34 10.99 84.71 0.93 1.27 16 23 N -0.59 -3.05 10.46 -197.99 -2.07 -5.12 16 24 C -0.12 0.60 5.39 30.61 0.17 0.77 16 25 C -0.09 0.23 4.50 30.61 0.14 0.37 16 26 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.06 0.42 5.89 -2.39 -0.01 0.41 16 29 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.06 0.40 5.89 -2.39 -0.01 0.39 16 33 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.08 -0.21 8.11 -2.39 -0.02 -0.23 16 36 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.42 -1.00 8.72 -92.71 -0.81 -1.81 16 40 H 0.18 -0.85 5.01 -2.91 -0.01 -0.86 16 41 H 0.13 -0.71 7.96 -2.39 -0.02 -0.73 16 42 H 0.38 -1.91 8.70 -74.06 -0.64 -2.55 16 43 H -0.30 -1.19 7.11 99.48 0.71 -0.48 16 44 H -0.28 0.15 7.02 99.48 0.70 0.85 16 45 H 0.18 -0.38 8.06 -2.91 -0.02 -0.40 16 46 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 47 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 48 H 0.08 -0.11 8.10 -2.39 -0.02 -0.13 16 49 H 0.07 0.02 8.10 -2.39 -0.02 0.00 16 Total: 0.00 -16.29 387.38 0.88 -15.41 By element: Atomic # 1 Polarization: -8.10 SS G_CDS: -0.46 Total: -8.56 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 7.07 Total: 13.03 kcal Atomic # 7 Polarization: -5.35 SS G_CDS: -5.62 Total: -10.97 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -2.17 Total: -7.90 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.05 Total: -1.01 kcal Total: -16.29 0.88 -15.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17607844_12175864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.390 kcal (2) G-P(sol) polarization free energy of solvation -16.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds