Wall clock time and date at job start Mon Mar 8 2021 08:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47029 * 2 1 4 4 C 1.52997 * 109.46929 * 239.99797 * 2 1 3 5 5 O 1.45199 * 109.47144 * 119.99861 * 2 1 3 6 6 C 1.34228 * 117.00110 * 60.00002 * 5 2 1 7 7 O 1.20822 * 120.00078 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99999 * 179.97438 * 6 5 2 9 9 H 1.09007 * 109.46849 * 60.00067 * 8 6 5 10 10 C 1.53002 * 109.47266 * 179.97438 * 8 6 5 11 11 C 1.53000 * 109.47085 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47104 * 299.99889 * 11 10 8 13 13 H 1.08990 * 109.47430 * 300.00262 * 12 11 10 14 14 N 1.46499 * 109.46833 * 179.97438 * 12 11 10 15 15 C 1.39005 * 120.00007 * 155.00010 * 14 12 11 16 16 N 1.32393 * 119.70921 * 179.72800 * 15 14 12 17 17 C 1.31972 * 121.62376 * 179.71508 * 16 15 14 18 18 C 1.38023 * 120.85708 * 0.56631 * 17 16 15 19 19 C 1.50700 * 120.33780 * 179.74805 * 18 17 16 20 20 O 1.42895 * 109.47120 * 244.97630 * 19 18 17 21 21 Si 1.86297 * 109.47063 * 4.97806 * 19 18 17 22 22 C 1.38888 * 119.32550 * 359.72463 * 18 17 16 23 23 C 1.38292 * 118.50598 * 359.97438 * 22 18 17 24 24 C 1.52998 * 109.47053 * 60.00471 * 12 11 10 25 25 C 1.53000 * 109.47154 * 299.99761 * 24 12 11 26 26 H 1.09007 * 109.47205 * 300.00163 * 1 2 3 27 27 H 1.08996 * 109.47306 * 60.00122 * 1 2 3 28 28 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46897 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47019 * 299.99808 * 3 2 1 31 31 H 1.08995 * 109.47619 * 60.00099 * 3 2 1 32 32 H 1.08998 * 109.47474 * 299.99935 * 4 2 1 33 33 H 1.09005 * 109.47261 * 60.00104 * 4 2 1 34 34 H 1.09007 * 109.46894 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46559 * 60.00012 * 10 8 6 36 36 H 1.09005 * 109.47082 * 300.00777 * 10 8 6 37 37 H 1.09002 * 109.46726 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.46824 * 60.00579 * 11 10 8 39 39 H 0.97005 * 120.00261 * 335.00546 * 14 12 11 40 40 H 1.08001 * 119.57224 * 180.27156 * 17 16 15 41 41 H 1.08999 * 109.47021 * 124.97638 * 19 18 17 42 42 H 0.96695 * 114.00109 * 179.97438 * 20 19 18 43 43 H 1.48498 * 109.99965 * 178.68357 * 21 19 18 44 44 H 1.48506 * 109.99955 * 300.00328 * 21 19 18 45 45 H 1.08000 * 120.74354 * 179.97438 * 22 18 17 46 46 H 1.08004 * 120.44727 * 179.97438 * 23 22 18 47 47 H 1.09007 * 109.47248 * 59.99543 * 24 12 11 48 48 H 1.08997 * 109.47450 * 179.97438 * 24 12 11 49 49 H 1.09002 * 109.47232 * 300.00298 * 25 24 12 50 50 H 1.09002 * 109.47099 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9559 -2.5025 0.5084 8 6 2.1183 -2.7436 2.5437 9 1 1.7548 -2.2587 3.4497 10 6 1.5706 -4.1706 2.4748 11 6 2.0422 -4.9575 3.6993 12 6 3.5715 -4.9987 3.7211 13 1 3.9349 -5.4839 2.8154 14 7 4.0229 -5.7516 4.8939 15 6 5.2672 -6.3711 4.8854 16 7 5.6717 -7.0455 5.9504 17 6 6.8431 -7.6527 5.9812 18 6 7.6988 -7.5955 4.8998 19 6 9.0361 -8.2884 4.9498 20 8 10.0798 -7.3142 4.8924 21 14 9.1756 -9.2553 6.5361 22 6 7.3146 -6.8932 3.7648 23 6 6.0788 -6.2725 3.7595 24 6 4.1191 -3.5717 3.7901 25 6 3.6476 -2.7847 2.5656 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2075 -2.1393 34 1 3.1300 -0.7209 -1.2494 35 1 1.9337 -4.6557 1.5687 36 1 0.4811 -4.1413 2.4595 37 1 1.6524 -5.9742 3.6499 38 1 1.6787 -4.4722 4.6050 39 1 3.4535 -5.8179 5.6765 40 1 7.1380 -8.1974 6.8660 41 1 9.1255 -8.9671 4.1016 42 1 10.9704 -7.6897 4.9206 43 1 10.4770 -9.9689 6.5832 44 1 9.0550 -8.3412 7.7003 45 1 7.9664 -6.8332 2.9057 46 1 5.7487 -5.7177 2.8937 47 1 3.7556 -3.0864 4.6960 48 1 5.2085 -3.6010 3.8061 49 1 4.0110 -3.2700 1.6598 50 1 4.0374 -1.7680 2.6150 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17607844_13915762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:05 Heat of formation + Delta-G solvation = -80.338590 kcal Electronic energy + Delta-G solvation = -29346.975042 eV Core-core repulsion = 25340.577908 eV Total energy + Delta-G solvation = -4006.397133 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.08965 -41.42735 -39.81260 -38.17660 -37.79276 -36.02239 -35.02907 -33.54458 -32.22936 -31.75093 -30.22889 -28.42303 -28.34085 -26.50696 -25.03018 -24.79777 -23.66236 -22.82086 -22.00323 -21.03795 -20.49831 -18.68193 -18.51210 -18.22790 -18.10852 -17.56603 -17.13397 -16.65826 -16.38398 -15.89076 -15.62893 -15.53928 -15.34197 -15.22959 -15.00396 -14.70852 -14.64663 -14.14506 -14.10042 -13.95089 -13.87209 -13.63028 -13.43285 -13.24704 -13.16412 -12.97208 -12.90091 -12.69776 -12.58509 -12.38184 -12.32922 -12.15917 -12.04946 -11.98612 -11.70845 -11.42652 -11.38874 -10.96974 -10.90219 -10.72760 -10.59455 -10.29245 -8.67559 -4.91247 0.23376 0.42012 1.17871 1.33134 1.60085 1.66248 1.95937 2.10061 2.79974 3.45942 3.47400 3.54174 3.61485 3.64518 3.70321 3.75374 3.85601 3.91473 3.94411 4.01454 4.06619 4.12193 4.16068 4.27651 4.31519 4.38275 4.43676 4.50983 4.54225 4.55599 4.67957 4.71693 4.74446 4.78586 4.78871 4.83445 4.87152 4.90436 5.03132 5.06400 5.07760 5.09907 5.14291 5.20647 5.24496 5.26515 5.27996 5.37138 5.54219 5.57366 6.05617 6.57018 6.64057 6.79500 7.16312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.465 3.535 7 O -0.525 6.525 8 C -0.079 4.079 9 H 0.124 0.876 10 C -0.094 4.094 11 C -0.116 4.116 12 C 0.154 3.846 13 H 0.086 0.914 14 N -0.714 5.714 15 C 0.398 3.602 16 N -0.564 5.564 17 C 0.144 3.856 18 C -0.199 4.199 19 C -0.065 4.065 20 O -0.560 6.560 21 Si 0.751 3.249 22 C -0.013 4.013 23 C -0.242 4.242 24 C -0.127 4.127 25 C -0.101 4.101 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.407 0.593 40 H 0.163 0.837 41 H 0.096 0.904 42 H 0.394 0.606 43 H -0.282 1.282 44 H -0.300 1.300 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 0.066 -1.718 1.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.309 3.691 7 O -0.414 6.414 8 C -0.098 4.098 9 H 0.141 0.859 10 C -0.132 4.132 11 C -0.154 4.154 12 C 0.049 3.951 13 H 0.104 0.896 14 N -0.345 5.345 15 C 0.161 3.839 16 N -0.282 5.282 17 C -0.013 4.013 18 C -0.205 4.205 19 C -0.175 4.175 20 O -0.370 6.370 21 Si 0.657 3.343 22 C -0.039 4.039 23 C -0.267 4.267 24 C -0.166 4.166 25 C -0.139 4.139 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.244 0.756 40 H 0.179 0.821 41 H 0.114 0.886 42 H 0.244 0.756 43 H -0.209 1.209 44 H -0.228 1.228 45 H 0.164 0.836 46 H 0.167 0.833 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.149 0.281 -0.751 1.401 hybrid contribution 1.321 0.577 -0.843 1.670 sum 0.172 0.858 -1.594 1.818 Atomic orbital electron populations 1.22461 0.94088 1.03601 1.03629 1.22406 0.94457 0.93241 0.82695 1.21878 1.02403 0.91324 1.03997 1.22454 1.01809 1.02083 0.97353 1.86556 1.69690 1.25446 1.45575 1.24098 0.76669 0.80617 0.87703 1.90591 1.36269 1.70395 1.44185 1.21256 0.98421 0.95613 0.94472 0.85854 1.21317 1.01314 0.91927 0.98646 1.21712 0.93045 1.01686 0.98918 1.21126 0.94880 0.91135 0.87954 0.89638 1.44635 1.15307 1.55274 1.19283 1.18625 0.87141 0.88800 0.89301 1.67161 1.18731 1.14547 1.27769 1.22406 0.88327 0.93715 0.96869 1.20107 0.97192 1.06528 0.96626 1.24666 0.85725 0.95000 1.12138 1.86548 1.18350 1.35907 1.96162 0.94295 0.85095 0.81097 0.73783 1.21419 0.94354 0.90690 0.97444 1.21663 0.96454 1.08509 1.00028 1.21977 1.01174 0.94936 0.98474 1.21429 0.91424 1.02017 0.99015 0.91778 0.89703 0.91773 0.91227 0.88852 0.91277 0.91773 0.89748 0.91707 0.91290 0.90731 0.90063 0.89764 0.75623 0.82075 0.88633 0.75579 1.20917 1.22783 0.83562 0.83302 0.90588 0.91458 0.91144 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.31 8.37 71.98 0.60 0.29 16 2 C 0.11 0.16 1.13 -10.80 -0.01 0.15 16 3 C -0.14 0.35 8.85 71.98 0.64 0.99 16 4 C -0.18 -0.28 8.37 71.98 0.60 0.32 16 5 O -0.36 -1.09 9.79 -51.40 -0.50 -1.59 16 6 C 0.46 1.33 6.57 71.24 0.47 1.80 16 7 O -0.53 -4.05 11.48 21.97 0.25 -3.80 16 8 C -0.08 0.25 2.63 -11.54 -0.03 0.22 16 9 H 0.12 -0.71 8.14 -2.38 -0.02 -0.73 16 10 C -0.09 0.34 4.49 30.59 0.14 0.48 16 11 C -0.12 0.71 5.39 30.59 0.16 0.88 16 12 C 0.15 -0.69 2.14 44.99 0.10 -0.60 16 13 H 0.09 -0.37 6.45 -2.39 -0.02 -0.38 16 14 N -0.71 0.55 5.24 -324.56 -1.70 -1.16 16 15 C 0.40 1.69 7.63 133.07 1.02 2.70 16 16 N -0.56 -4.23 10.39 -193.26 -2.01 -6.24 16 17 C 0.14 0.77 9.84 84.62 0.83 1.60 16 18 C -0.20 -0.74 5.39 -19.76 -0.11 -0.85 16 19 C -0.07 0.01 2.81 71.24 0.20 0.21 16 20 O -0.56 -1.36 12.82 -148.98 -1.91 -3.27 16 21 Si 0.75 -0.77 29.88 68.60 2.05 1.28 16 22 C -0.01 -0.04 9.84 22.44 0.22 0.18 16 23 C -0.24 -0.53 8.83 22.50 0.20 -0.33 16 24 C -0.13 0.59 5.42 30.59 0.17 0.76 16 25 C -0.10 0.46 5.14 30.59 0.16 0.62 16 26 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 27 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.06 0.39 5.89 -2.39 -0.01 0.37 16 29 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.06 0.38 5.89 -2.39 -0.01 0.36 16 33 H 0.08 -0.10 8.14 -2.38 -0.02 -0.11 16 34 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.07 -0.11 8.10 -2.39 -0.02 -0.13 16 36 H 0.07 -0.15 8.10 -2.38 -0.02 -0.17 16 37 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.41 -0.68 8.73 -92.70 -0.81 -1.49 16 40 H 0.16 0.34 4.87 -2.91 -0.01 0.32 16 41 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 42 H 0.39 -2.23 8.74 -74.06 -0.65 -2.88 16 43 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 44 H -0.30 -1.99 7.05 99.48 0.70 -1.29 16 45 H 0.15 -0.09 8.06 -2.91 -0.02 -0.12 16 46 H 0.15 -0.28 6.08 -2.91 -0.02 -0.29 16 47 H 0.08 -0.36 8.14 -2.38 -0.02 -0.38 16 48 H 0.07 -0.17 7.66 -2.39 -0.02 -0.19 16 49 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 50 H 0.08 -0.33 8.11 -2.39 -0.02 -0.35 16 Total: 0.00 -16.73 388.94 1.05 -15.68 By element: Atomic # 1 Polarization: -9.84 SS G_CDS: -0.48 Total: -10.32 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.35 Total: 9.42 kcal Atomic # 7 Polarization: -3.69 SS G_CDS: -3.71 Total: -7.40 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -2.16 Total: -8.65 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.05 Total: 1.28 kcal Total: -16.73 1.05 -15.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17607844_13915762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.661 kcal (2) G-P(sol) polarization free energy of solvation -16.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds