Wall clock time and date at job start Mon Mar 8 2021 08:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46914 * 2 1 4 4 C 1.53003 * 109.47472 * 240.00120 * 2 1 3 5 5 O 1.45200 * 109.47417 * 119.99746 * 2 1 3 6 6 C 1.34230 * 116.99828 * 59.99850 * 5 2 1 7 7 O 1.20830 * 119.99999 * 0.02562 * 6 5 2 8 8 C 1.50702 * 120.00217 * 180.02562 * 6 5 2 9 9 H 1.08995 * 109.46966 * 300.00302 * 8 6 5 10 10 C 1.52997 * 109.46928 * 60.00274 * 8 6 5 11 11 C 1.53003 * 109.47127 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47010 * 300.00125 * 11 10 8 13 13 H 1.08995 * 109.47098 * 299.99700 * 12 11 10 14 14 N 1.46498 * 109.47257 * 179.97438 * 12 11 10 15 15 C 1.38606 * 119.99817 * 84.72165 * 14 12 11 16 16 N 1.29693 * 124.94908 * 359.97438 * 15 14 12 17 17 C 1.32118 * 116.86238 * 179.81263 * 16 15 14 18 18 C 1.33325 * 114.58432 * 0.47515 * 17 16 15 19 19 C 1.50699 * 125.95520 * 179.75661 * 18 17 16 20 20 O 1.42903 * 109.46963 * 299.96927 * 19 18 17 21 21 Si 1.86300 * 109.47181 * 179.97438 * 19 18 17 22 22 S 1.70970 * 124.95128 * 180.27930 * 15 14 12 23 23 C 1.53004 * 109.47083 * 59.99777 * 12 11 10 24 24 C 1.52994 * 109.47215 * 299.99913 * 23 12 11 25 25 H 1.09001 * 109.47159 * 300.00219 * 1 2 3 26 26 H 1.08997 * 109.47021 * 60.00158 * 1 2 3 27 27 H 1.08998 * 109.46631 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47088 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47147 * 299.99764 * 3 2 1 30 30 H 1.08997 * 109.46952 * 59.99709 * 3 2 1 31 31 H 1.08996 * 109.46735 * 299.99995 * 4 2 1 32 32 H 1.09002 * 109.46801 * 59.99656 * 4 2 1 33 33 H 1.08994 * 109.47156 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47253 * 300.00124 * 10 8 6 35 35 H 1.09003 * 109.47446 * 59.99968 * 10 8 6 36 36 H 1.08996 * 109.47248 * 179.97438 * 11 10 8 37 37 H 1.08995 * 109.46945 * 59.99919 * 11 10 8 38 38 H 0.97001 * 120.00384 * 265.00562 * 14 12 11 39 39 H 1.08008 * 122.71060 * 180.22499 * 17 16 15 40 40 H 1.08999 * 109.47119 * 59.96833 * 19 18 17 41 41 H 0.96692 * 114.00098 * 300.00654 * 20 19 18 42 42 H 1.48505 * 109.99827 * 179.97438 * 21 19 18 43 43 H 1.48497 * 110.00039 * 301.31745 * 21 19 18 44 44 H 1.08994 * 109.46839 * 60.00381 * 23 12 11 45 45 H 1.08998 * 109.46617 * 179.97438 * 23 12 11 46 46 H 1.08996 * 109.47083 * 180.02562 * 24 23 12 47 47 H 1.09003 * 109.47213 * 300.00438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1174 -2.7434 2.5442 9 1 3.2069 -2.7721 2.5605 10 6 1.6062 -2.0625 3.8154 11 6 2.0778 -2.8490 5.0402 12 6 1.5314 -4.2764 4.9710 13 1 0.4419 -4.2480 4.9550 14 7 1.9834 -5.0296 6.1434 15 6 1.2751 -4.9521 7.3323 16 7 0.2033 -4.2447 7.5138 17 6 -0.3463 -4.2909 8.7143 18 6 0.2962 -5.0652 9.5891 19 6 -0.1015 -5.2979 11.0239 20 8 -0.1054 -4.0527 11.7250 21 14 1.1161 -6.4579 11.8255 22 16 1.6911 -5.7692 8.7753 23 6 2.0427 -4.9572 3.6998 24 6 1.5710 -4.1708 2.4751 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7488 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2494 34 1 1.9958 -1.0458 3.8648 35 1 0.5166 -2.0337 3.7991 36 1 1.7139 -2.3637 5.9458 37 1 3.1672 -2.8774 5.0562 38 1 2.7807 -5.5794 6.0889 39 1 -1.2414 -3.7423 8.9680 40 1 -1.0984 -5.7372 11.0579 41 1 0.7513 -3.6045 11.7353 42 1 0.7353 -6.6949 13.2412 43 1 1.1530 -7.7455 11.0866 44 1 3.1321 -4.9856 3.7160 45 1 1.6537 -5.9743 3.6508 46 1 1.9349 -4.6560 1.5695 47 1 0.4815 -4.1423 2.4590 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17607844_15704118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:11 Heat of formation + Delta-G solvation = -80.599356 kcal Electronic energy + Delta-G solvation = -27784.131560 eV Core-core repulsion = 23866.875365 eV Total energy + Delta-G solvation = -3917.256195 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99671 -40.83998 -39.73903 -38.07431 -37.69106 -35.96716 -34.96238 -32.07534 -31.77255 -30.52902 -28.35794 -28.34920 -26.72235 -25.47659 -24.19769 -23.91182 -22.62636 -21.32907 -20.66046 -20.40977 -19.62120 -18.22476 -18.11758 -17.54542 -17.22348 -16.88055 -16.57607 -16.30773 -15.89074 -15.69404 -15.51126 -15.43275 -15.10406 -14.91381 -14.79915 -14.62638 -14.23444 -13.97383 -13.72863 -13.48269 -13.33657 -13.15080 -12.94812 -12.89176 -12.86766 -12.68897 -12.60477 -12.34464 -12.32536 -12.27633 -12.07630 -11.97879 -11.83616 -11.47087 -11.33070 -11.05413 -10.80498 -10.73849 -10.22411 -10.13073 -8.73336 -5.12692 -0.00618 0.04998 0.71172 1.27233 1.27456 1.59362 1.68324 1.91701 2.06269 2.11669 3.41386 3.45364 3.49130 3.52861 3.68805 3.74490 3.78521 3.87187 3.94110 3.95729 3.99209 4.11819 4.18654 4.25321 4.32283 4.49464 4.53679 4.57122 4.58947 4.64235 4.74694 4.75714 4.77098 4.83055 4.87006 4.89430 4.91348 5.00688 5.05741 5.06616 5.10447 5.16325 5.27784 5.28839 5.31187 5.62006 5.84526 6.05616 6.53594 6.88986 7.03138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.349 6.349 6 C 0.468 3.532 7 O -0.501 6.501 8 C -0.083 4.083 9 H 0.109 0.891 10 C -0.107 4.107 11 C -0.127 4.127 12 C 0.158 3.842 13 H 0.093 0.907 14 N -0.690 5.690 15 C 0.328 3.672 16 N -0.550 5.550 17 C 0.120 3.880 18 C -0.308 4.308 19 C -0.010 4.010 20 O -0.537 6.537 21 Si 0.655 3.345 22 S 0.084 5.916 23 C -0.127 4.127 24 C -0.098 4.098 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.413 0.587 39 H 0.175 0.825 40 H 0.121 0.879 41 H 0.380 0.620 42 H -0.236 1.236 43 H -0.241 1.241 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 0.804 -0.275 4.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.267 6.267 6 C 0.311 3.689 7 O -0.389 6.389 8 C -0.102 4.102 9 H 0.127 0.873 10 C -0.145 4.145 11 C -0.166 4.166 12 C 0.051 3.949 13 H 0.111 0.889 14 N -0.328 5.328 15 C -0.042 4.042 16 N -0.275 5.275 17 C -0.031 4.031 18 C -0.431 4.431 19 C -0.124 4.124 20 O -0.342 6.342 21 Si 0.555 3.445 22 S 0.333 5.667 23 C -0.165 4.165 24 C -0.137 4.137 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.192 0.808 40 H 0.138 0.862 41 H 0.227 0.773 42 H -0.159 1.159 43 H -0.165 1.165 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.628 -0.542 -0.348 4.673 hybrid contribution -0.955 0.436 -0.391 1.120 sum 3.673 -0.107 -0.739 3.748 Atomic orbital electron populations 1.22492 0.93887 1.04720 1.02953 1.22224 0.94480 0.92350 0.82883 1.21867 1.02282 0.92477 1.03267 1.22494 1.01696 1.03106 0.96759 1.86549 1.69656 1.25285 1.45195 1.23588 0.77350 0.80723 0.87239 1.90596 1.35028 1.69950 1.43283 1.21187 1.03009 0.94726 0.91252 0.87290 1.21477 1.01812 0.99599 0.91592 1.21940 1.01164 0.95082 0.98388 1.21106 1.00533 0.90368 0.82883 0.88901 1.44155 1.29576 1.52132 1.06948 1.23739 0.93228 0.95033 0.92230 1.66497 1.11077 1.26539 1.23365 1.21326 0.99538 0.96590 0.85666 1.25562 1.02347 1.12142 1.03002 1.24104 1.07125 0.93607 0.87589 1.86511 1.37776 1.34824 1.75132 0.94986 0.87175 0.80308 0.81993 1.83985 1.28927 1.49445 1.04300 1.21830 1.01712 0.99844 0.93108 1.21362 1.02199 0.92079 0.98023 0.91920 0.90901 0.89851 0.91410 0.90201 0.91378 0.89851 0.90887 0.91971 0.90033 0.90948 0.90477 0.91353 0.74933 0.80773 0.86182 0.77283 1.15936 1.16537 0.90885 0.90369 0.90184 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.18 8.37 37.16 0.31 0.13 16 2 C 0.12 0.11 1.13 -90.61 -0.10 0.00 16 3 C -0.14 0.11 8.85 37.16 0.33 0.44 16 4 C -0.18 -0.16 8.37 37.16 0.31 0.15 16 5 O -0.35 -0.58 9.79 -39.26 -0.38 -0.97 16 6 C 0.47 0.71 6.57 36.01 0.24 0.95 16 7 O -0.50 -1.84 11.49 -18.75 -0.22 -2.05 16 8 C -0.08 0.10 2.63 -91.77 -0.24 -0.14 16 9 H 0.11 -0.27 8.14 -51.93 -0.42 -0.70 16 10 C -0.11 0.15 5.14 -26.73 -0.14 0.01 16 11 C -0.13 0.20 5.51 -26.73 -0.15 0.06 16 12 C 0.16 -0.24 2.58 -67.93 -0.18 -0.41 16 13 H 0.09 0.05 7.77 -51.93 -0.40 -0.35 16 14 N -0.69 1.01 5.23 -55.78 -0.29 0.71 16 15 C 0.33 0.26 8.06 -87.68 -0.71 -0.45 16 16 N -0.55 -1.39 9.91 -15.21 -0.15 -1.54 16 17 C 0.12 0.21 11.22 -19.14 -0.21 0.00 16 18 C -0.31 -0.19 5.74 -36.02 -0.21 -0.40 16 19 C -0.01 0.00 2.99 36.01 0.11 0.11 16 20 O -0.54 -0.11 12.87 -35.23 -0.45 -0.56 16 21 Si 0.66 -0.44 31.05 -169.99 -5.28 -5.72 16 22 S 0.08 -0.02 20.57 -107.50 -2.21 -2.23 16 23 C -0.13 0.36 5.39 -26.73 -0.14 0.22 16 24 C -0.10 0.14 4.50 -26.73 -0.12 0.02 16 25 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 26 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.08 0.23 5.89 -51.93 -0.31 -0.07 16 28 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 29 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.08 0.22 5.89 -51.93 -0.31 -0.09 16 32 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.08 -0.10 8.11 -51.93 -0.42 -0.52 16 35 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 36 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 37 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 38 H 0.41 -1.49 8.73 -40.82 -0.36 -1.85 16 39 H 0.18 0.14 8.06 -52.48 -0.42 -0.28 16 40 H 0.12 0.01 7.96 -51.93 -0.41 -0.41 16 41 H 0.38 -1.29 8.70 45.56 0.40 -0.90 16 42 H -0.24 -0.47 7.11 56.52 0.40 -0.07 16 43 H -0.24 -0.38 7.11 56.52 0.40 0.02 16 44 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 45 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 46 H 0.08 -0.08 8.10 -51.93 -0.42 -0.50 16 47 H 0.08 -0.02 8.10 -51.93 -0.42 -0.44 16 LS Contribution 385.31 15.07 5.81 5.81 Total: 0.00 -6.14 385.31 -11.85 -17.99 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -7.77 Total: -12.12 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.90 Total: 0.68 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -0.44 Total: -0.83 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: -1.05 Total: -3.58 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: -5.28 Total: -5.72 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.21 Total: -2.23 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -6.14 -11.85 -17.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17607844_15704118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.614 kcal (2) G-P(sol) polarization free energy of solvation -6.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds