Wall clock time and date at job start Mon Mar 8 2021 08:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46914 * 2 1 4 4 C 1.53003 * 109.47472 * 240.00120 * 2 1 3 5 5 O 1.45200 * 109.47417 * 119.99746 * 2 1 3 6 6 C 1.34230 * 116.99828 * 59.99850 * 5 2 1 7 7 O 1.20830 * 119.99999 * 0.02562 * 6 5 2 8 8 C 1.50702 * 120.00217 * 180.02562 * 6 5 2 9 9 H 1.08995 * 109.46966 * 300.00302 * 8 6 5 10 10 C 1.52997 * 109.46928 * 60.00274 * 8 6 5 11 11 C 1.53003 * 109.47127 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47010 * 300.00125 * 11 10 8 13 13 H 1.08995 * 109.47098 * 299.99700 * 12 11 10 14 14 N 1.46498 * 109.47257 * 179.97438 * 12 11 10 15 15 C 1.38606 * 119.99817 * 84.72165 * 14 12 11 16 16 N 1.29693 * 124.94908 * 359.97438 * 15 14 12 17 17 C 1.32118 * 116.86238 * 179.81263 * 16 15 14 18 18 C 1.33325 * 114.58432 * 0.47515 * 17 16 15 19 19 C 1.50699 * 125.95520 * 179.75661 * 18 17 16 20 20 O 1.42903 * 109.46963 * 299.96927 * 19 18 17 21 21 Si 1.86300 * 109.47181 * 179.97438 * 19 18 17 22 22 S 1.70970 * 124.95128 * 180.27930 * 15 14 12 23 23 C 1.53004 * 109.47083 * 59.99777 * 12 11 10 24 24 C 1.52994 * 109.47215 * 299.99913 * 23 12 11 25 25 H 1.09001 * 109.47159 * 300.00219 * 1 2 3 26 26 H 1.08997 * 109.47021 * 60.00158 * 1 2 3 27 27 H 1.08998 * 109.46631 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47088 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47147 * 299.99764 * 3 2 1 30 30 H 1.08997 * 109.46952 * 59.99709 * 3 2 1 31 31 H 1.08996 * 109.46735 * 299.99995 * 4 2 1 32 32 H 1.09002 * 109.46801 * 59.99656 * 4 2 1 33 33 H 1.08994 * 109.47156 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47253 * 300.00124 * 10 8 6 35 35 H 1.09003 * 109.47446 * 59.99968 * 10 8 6 36 36 H 1.08996 * 109.47248 * 179.97438 * 11 10 8 37 37 H 1.08995 * 109.46945 * 59.99919 * 11 10 8 38 38 H 0.97001 * 120.00384 * 265.00562 * 14 12 11 39 39 H 1.08008 * 122.71060 * 180.22499 * 17 16 15 40 40 H 1.08999 * 109.47119 * 59.96833 * 19 18 17 41 41 H 0.96692 * 114.00098 * 300.00654 * 20 19 18 42 42 H 1.48505 * 109.99827 * 179.97438 * 21 19 18 43 43 H 1.48497 * 110.00039 * 301.31745 * 21 19 18 44 44 H 1.08994 * 109.46839 * 60.00381 * 23 12 11 45 45 H 1.08998 * 109.46617 * 179.97438 * 23 12 11 46 46 H 1.08996 * 109.47083 * 180.02562 * 24 23 12 47 47 H 1.09003 * 109.47213 * 300.00438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1174 -2.7434 2.5442 9 1 3.2069 -2.7721 2.5605 10 6 1.6062 -2.0625 3.8154 11 6 2.0778 -2.8490 5.0402 12 6 1.5314 -4.2764 4.9710 13 1 0.4419 -4.2480 4.9550 14 7 1.9834 -5.0296 6.1434 15 6 1.2751 -4.9521 7.3323 16 7 0.2033 -4.2447 7.5138 17 6 -0.3463 -4.2909 8.7143 18 6 0.2962 -5.0652 9.5891 19 6 -0.1015 -5.2979 11.0239 20 8 -0.1054 -4.0527 11.7250 21 14 1.1161 -6.4579 11.8255 22 16 1.6911 -5.7692 8.7753 23 6 2.0427 -4.9572 3.6998 24 6 1.5710 -4.1708 2.4751 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7488 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2494 34 1 1.9958 -1.0458 3.8648 35 1 0.5166 -2.0337 3.7991 36 1 1.7139 -2.3637 5.9458 37 1 3.1672 -2.8774 5.0562 38 1 2.7807 -5.5794 6.0889 39 1 -1.2414 -3.7423 8.9680 40 1 -1.0984 -5.7372 11.0579 41 1 0.7513 -3.6045 11.7353 42 1 0.7353 -6.6949 13.2412 43 1 1.1530 -7.7455 11.0866 44 1 3.1321 -4.9856 3.7160 45 1 1.6537 -5.9743 3.6508 46 1 1.9349 -4.6560 1.5695 47 1 0.4815 -4.1423 2.4590 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17607844_15704118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:09 Heat of formation + Delta-G solvation = -75.014973 kcal Electronic energy + Delta-G solvation = -27783.889402 eV Core-core repulsion = 23866.875365 eV Total energy + Delta-G solvation = -3917.014038 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07794 -40.86165 -39.71013 -38.13083 -37.72975 -35.95998 -35.01493 -32.00932 -31.73099 -30.51287 -28.43077 -28.34100 -26.74309 -25.49438 -24.21490 -23.81139 -22.61782 -21.27511 -20.67948 -20.47264 -19.59663 -18.26500 -18.14085 -17.60440 -17.24949 -16.91627 -16.57576 -16.30973 -15.88111 -15.68753 -15.54388 -15.42994 -15.06881 -14.95811 -14.81317 -14.66090 -14.19599 -14.02095 -13.67392 -13.43521 -13.24551 -13.17176 -12.98197 -12.91548 -12.90088 -12.67068 -12.60508 -12.44939 -12.34063 -12.18944 -12.08450 -11.97775 -11.76620 -11.43348 -11.38808 -11.02294 -10.89148 -10.75838 -10.25602 -10.14400 -8.71843 -5.10553 -0.03750 0.04144 0.68237 1.17282 1.27688 1.58475 1.66410 1.89273 1.99644 2.19727 3.43725 3.52507 3.57734 3.60824 3.67606 3.72680 3.75249 3.91360 3.93602 3.96786 4.08858 4.19344 4.31132 4.34333 4.43747 4.48981 4.53829 4.55014 4.64004 4.71166 4.72895 4.76428 4.79004 4.83327 4.87563 4.91487 5.04761 5.07781 5.08176 5.11722 5.14168 5.20130 5.24479 5.26632 5.36125 5.55803 5.86256 6.20509 6.73557 6.78922 7.04482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.354 6.354 6 C 0.464 3.536 7 O -0.527 6.527 8 C -0.077 4.077 9 H 0.131 0.869 10 C -0.100 4.100 11 C -0.117 4.117 12 C 0.161 3.839 13 H 0.068 0.932 14 N -0.679 5.679 15 C 0.318 3.682 16 N -0.578 5.578 17 C 0.104 3.896 18 C -0.310 4.310 19 C -0.014 4.014 20 O -0.551 6.551 21 Si 0.731 3.269 22 S 0.115 5.885 23 C -0.116 4.116 24 C -0.095 4.095 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.426 0.574 39 H 0.175 0.825 40 H 0.117 0.883 41 H 0.395 0.605 42 H -0.273 1.273 43 H -0.268 1.268 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 0.902 -0.285 6.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.272 6.272 6 C 0.308 3.692 7 O -0.416 6.416 8 C -0.095 4.095 9 H 0.149 0.851 10 C -0.138 4.138 11 C -0.156 4.156 12 C 0.054 3.946 13 H 0.086 0.914 14 N -0.319 5.319 15 C -0.053 4.053 16 N -0.304 5.304 17 C -0.047 4.047 18 C -0.433 4.433 19 C -0.128 4.128 20 O -0.358 6.358 21 Si 0.635 3.365 22 S 0.364 5.636 23 C -0.154 4.154 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.265 0.735 39 H 0.192 0.808 40 H 0.134 0.866 41 H 0.245 0.755 42 H -0.198 1.198 43 H -0.194 1.194 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.344 -0.427 -0.370 6.369 hybrid contribution -1.521 0.409 -0.393 1.623 sum 4.823 -0.018 -0.763 4.883 Atomic orbital electron populations 1.22459 0.94257 1.03483 1.03584 1.22415 0.94345 0.93337 0.82718 1.21876 1.02471 0.91206 1.03997 1.22455 1.01878 1.02046 0.97332 1.86554 1.69645 1.25407 1.45569 1.24135 0.76748 0.80688 0.87588 1.90592 1.36189 1.70403 1.44429 1.21252 1.04152 0.94236 0.89900 0.85099 1.21396 1.00885 0.99806 0.91725 1.21839 1.01985 0.94578 0.97220 1.21018 0.99239 0.90783 0.83531 0.91381 1.44170 1.29629 1.51921 1.06214 1.23953 0.93128 0.94963 0.93209 1.66490 1.12153 1.27781 1.23974 1.21408 1.00005 0.97364 0.85928 1.25681 1.02683 1.11806 1.03148 1.24225 1.07314 0.93868 0.87345 1.86476 1.39337 1.34993 1.75040 0.94106 0.85872 0.78061 0.78461 1.83802 1.27909 1.48647 1.03246 1.21752 1.02979 0.99341 0.91329 1.21311 1.01090 0.92227 0.98689 0.91887 0.89662 0.91957 0.91078 0.88837 0.91305 0.91850 0.89711 0.91565 0.89856 0.92459 0.92254 0.89665 0.73481 0.80835 0.86619 0.75506 1.19837 1.19423 0.88603 0.90110 0.90370 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 2 C 0.11 0.23 1.13 -10.79 -0.01 0.22 16 3 C -0.14 0.30 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.37 8.37 71.98 0.60 0.23 16 5 O -0.35 -1.34 9.79 -51.41 -0.50 -1.85 16 6 C 0.46 1.82 6.57 71.24 0.47 2.29 16 7 O -0.53 -4.74 11.49 21.95 0.25 -4.49 16 8 C -0.08 0.18 2.63 -11.54 -0.03 0.15 16 9 H 0.13 -0.86 8.14 -2.39 -0.02 -0.87 16 10 C -0.10 0.23 5.14 30.59 0.16 0.38 16 11 C -0.12 0.39 5.51 30.60 0.17 0.56 16 12 C 0.16 -0.47 2.58 44.99 0.12 -0.36 16 13 H 0.07 0.18 7.77 -2.39 -0.02 0.16 16 14 N -0.68 2.32 5.23 -330.40 -1.73 0.59 16 15 C 0.32 0.53 8.06 179.32 1.44 1.97 16 16 N -0.58 -3.50 9.91 -202.02 -2.00 -5.50 16 17 C 0.10 0.47 11.22 83.54 0.94 1.41 16 18 C -0.31 -0.48 5.74 24.57 0.14 -0.33 16 19 C -0.01 0.00 2.99 71.24 0.21 0.21 16 20 O -0.55 -0.24 12.87 -148.98 -1.92 -2.15 16 21 Si 0.73 -1.02 31.05 68.60 2.13 1.11 16 22 S 0.11 -0.11 20.57 -56.49 -1.16 -1.27 16 23 C -0.12 0.75 5.39 30.59 0.16 0.91 16 24 C -0.09 0.24 4.50 30.59 0.14 0.38 16 25 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H 0.06 0.47 5.89 -2.39 -0.01 0.45 16 28 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 0.41 5.89 -2.39 -0.01 0.40 16 32 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.08 -0.20 8.11 -2.39 -0.02 -0.22 16 35 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.43 -3.67 8.73 -92.71 -0.81 -4.48 16 39 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 40 H 0.12 0.08 7.96 -2.39 -0.02 0.07 16 41 H 0.39 -2.83 8.70 -74.06 -0.64 -3.48 16 42 H -0.27 -1.27 7.11 99.48 0.71 -0.56 16 43 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 44 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.08 -0.14 8.10 -2.39 -0.02 -0.16 16 47 H 0.06 0.08 8.10 -2.39 -0.02 0.06 16 Total: 0.00 -15.92 385.31 0.38 -15.54 By element: Atomic # 1 Polarization: -10.58 SS G_CDS: -0.44 Total: -11.02 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.75 Total: 9.04 kcal Atomic # 7 Polarization: -1.18 SS G_CDS: -3.73 Total: -4.91 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -2.17 Total: -8.49 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: 2.13 Total: 1.11 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.16 Total: -1.27 kcal Total: -15.92 0.38 -15.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17607844_15704118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.478 kcal (2) G-P(sol) polarization free energy of solvation -15.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds