Wall clock time and date at job start Mon Mar 8 2021 08:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33327 * 125.95374 * 2 1 4 4 C 1.50705 * 122.70745 * 0.02602 * 3 2 1 5 5 O 1.42895 * 109.46971 * 44.28466 * 4 3 2 6 6 Si 1.86299 * 109.47049 * 164.28250 * 4 3 2 7 7 N 1.32120 * 114.58446 * 180.02562 * 3 2 1 8 8 C 1.29685 * 116.86115 * 359.97438 * 7 3 2 9 9 N 1.38614 * 124.94639 * 179.97438 * 8 7 3 10 10 C 1.46497 * 120.00029 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47182 * 325.00354 * 10 9 8 12 12 C 1.53002 * 109.47279 * 85.00192 * 10 9 8 13 13 C 1.52999 * 109.46854 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47561 * 300.00082 * 13 12 10 15 15 H 1.09009 * 109.46953 * 300.00376 * 14 13 12 16 16 C 1.50694 * 109.47239 * 180.02562 * 14 13 12 17 17 O 1.20832 * 119.99740 * 240.00048 * 16 14 13 18 18 O 1.34229 * 120.00510 * 59.99622 * 16 14 13 19 19 C 1.45203 * 117.00232 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46719 * 60.00508 * 19 18 16 21 21 C 1.53002 * 109.46934 * 179.97438 * 19 18 16 22 22 C 1.52994 * 109.47302 * 300.00456 * 19 18 16 23 23 C 1.52993 * 109.47133 * 60.00275 * 14 13 12 24 24 C 1.53001 * 109.47070 * 299.99906 * 23 14 13 25 25 S 1.70964 * 110.10453 * 0.24698 * 8 7 3 26 26 H 1.09001 * 109.47126 * 84.36701 * 1 2 3 27 27 H 1.08996 * 109.46776 * 204.36633 * 1 2 3 28 28 H 1.08997 * 109.46844 * 324.36482 * 1 2 3 29 29 H 1.08994 * 109.47220 * 284.28563 * 4 3 2 30 30 H 0.96706 * 114.00433 * 60.00109 * 5 4 3 31 31 H 1.48501 * 109.99986 * 58.68126 * 6 4 3 32 32 H 1.48503 * 109.99960 * 179.97438 * 6 4 3 33 33 H 0.97001 * 120.00205 * 0.02562 * 9 8 7 34 34 H 1.08993 * 109.46774 * 300.00021 * 12 10 9 35 35 H 1.09000 * 109.46881 * 59.99978 * 12 10 9 36 36 H 1.09008 * 109.46614 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47260 * 60.00375 * 13 12 10 38 38 H 1.08998 * 109.47626 * 60.00064 * 20 19 18 39 39 H 1.09003 * 109.46999 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47036 * 299.99409 * 20 19 18 41 41 H 1.09001 * 109.46835 * 60.00749 * 21 19 18 42 42 H 1.09003 * 109.46619 * 180.02562 * 21 19 18 43 43 H 1.08996 * 109.47058 * 300.00258 * 21 19 18 44 44 H 1.09001 * 109.47514 * 59.99940 * 22 19 18 45 45 H 1.08999 * 109.47475 * 180.02562 * 22 19 18 46 46 H 1.09001 * 109.47344 * 299.99788 * 22 19 18 47 47 H 1.09004 * 109.47178 * 180.02562 * 23 14 13 48 48 H 1.08999 * 109.47528 * 59.99927 * 23 14 13 49 49 H 1.09000 * 109.47358 * 300.00004 * 24 23 14 50 50 H 1.09008 * 109.47012 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.6701 2.5754 0.9417 6 14 3.0905 3.6765 0.4762 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8926 -0.0015 10 6 5.5066 -2.3328 -0.0019 11 1 4.7459 -2.8442 0.5880 12 6 5.4753 -2.8570 -1.4389 13 6 5.7560 -4.3611 -1.4393 14 6 7.1351 -4.6227 -0.8308 15 1 7.8956 -4.1110 -1.4209 16 6 7.4118 -6.1041 -0.8318 17 8 7.6131 -6.6817 0.2103 18 8 7.4345 -6.7820 -1.9901 19 6 7.7078 -8.2061 -1.9153 20 6 6.6360 -8.8868 -1.0616 21 6 7.6921 -8.8030 -3.3240 22 6 9.0823 -8.4290 -1.2815 23 6 7.1664 -4.0986 0.6062 24 6 6.8858 -2.5945 0.6066 25 16 2.5413 -1.4260 -0.0066 26 1 -0.3633 0.1009 -1.0227 27 1 -0.3633 -0.9361 0.4240 28 1 -0.3633 0.8352 0.5987 29 1 1.3727 2.7294 -0.9950 30 1 0.9263 2.3689 1.8510 31 1 4.2243 3.5674 -0.4766 32 1 2.5626 5.0646 0.4799 33 1 5.9756 -0.2620 -0.0019 34 1 4.4929 -2.6703 -1.8724 35 1 6.2360 -2.3457 -2.0288 36 1 5.7342 -4.7345 -2.4632 37 1 4.9956 -4.8727 -0.8493 38 1 5.6567 -8.7281 -1.5131 39 1 6.8414 -9.9558 -1.0050 40 1 6.6467 -8.4616 -0.0580 41 1 8.4554 -8.3181 -3.9325 42 1 7.8969 -9.8722 -3.2677 43 1 6.7127 -8.6442 -3.7750 44 1 9.0930 -8.0038 -0.2779 45 1 9.2877 -9.4980 -1.2258 46 1 9.8459 -7.9440 -1.8897 47 1 8.1491 -4.2846 1.0395 48 1 6.4060 -4.6102 1.1962 49 1 7.6462 -2.0829 0.0166 50 1 6.9076 -2.2211 1.6305 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17607844_15704122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:14 Heat of formation + Delta-G solvation = -77.650091 kcal Electronic energy + Delta-G solvation = -29976.611649 eV Core-core repulsion = 25903.945726 eV Total energy + Delta-G solvation = -4072.665924 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.165 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.07913 -41.09089 -39.98363 -38.16652 -37.63949 -36.01971 -35.02415 -32.99302 -31.90989 -30.89397 -28.98016 -28.42198 -28.33976 -25.83213 -25.29181 -24.21785 -23.76412 -22.54394 -21.42992 -20.54492 -20.28173 -19.12541 -18.26194 -17.94128 -17.59431 -17.33869 -17.06378 -16.66774 -16.60033 -15.78657 -15.67582 -15.53950 -15.43400 -15.11457 -14.91881 -14.69061 -14.32098 -14.27417 -14.07478 -13.77961 -13.60896 -13.44887 -13.33253 -13.27413 -13.16555 -12.97826 -12.90058 -12.85146 -12.68871 -12.57275 -12.42926 -12.29221 -12.21313 -12.05140 -12.00240 -11.67315 -11.48512 -11.41108 -10.93990 -10.85963 -10.62918 -10.35487 -10.03765 -8.64268 -4.91115 -0.01453 0.15807 0.74551 1.17589 1.35975 1.65015 1.72982 1.82617 1.92909 2.08609 3.38554 3.44862 3.50311 3.55624 3.58932 3.70457 3.74999 3.87977 3.91634 3.99031 4.10761 4.15970 4.22310 4.27140 4.36453 4.40348 4.47818 4.53817 4.55725 4.59594 4.71429 4.71903 4.78450 4.79578 4.80243 4.83652 4.88003 4.91694 5.02211 5.05019 5.08497 5.10998 5.12411 5.20725 5.22011 5.25099 5.28623 5.35417 5.55899 5.65986 6.33097 6.66964 6.79182 6.94209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.244 4.244 3 C 0.052 3.948 4 C -0.032 4.032 5 O -0.540 6.540 6 Si 0.795 3.205 7 N -0.569 5.569 8 C 0.313 3.687 9 N -0.683 5.683 10 C 0.150 3.850 11 H 0.081 0.919 12 C -0.130 4.130 13 C -0.101 4.101 14 C -0.079 4.079 15 H 0.126 0.874 16 C 0.465 3.535 17 O -0.525 6.525 18 O -0.355 6.355 19 C 0.108 3.892 20 C -0.180 4.180 21 C -0.139 4.139 22 C -0.181 4.181 23 C -0.095 4.095 24 C -0.114 4.114 25 S 0.115 5.885 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.395 0.605 31 H -0.304 1.304 32 H -0.297 1.297 33 H 0.416 0.584 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -3.409 0.137 3.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.367 4.367 3 C -0.078 4.078 4 C -0.145 4.145 5 O -0.347 6.347 6 Si 0.702 3.298 7 N -0.297 5.297 8 C -0.058 4.058 9 N -0.323 5.323 10 C 0.046 3.954 11 H 0.099 0.901 12 C -0.169 4.169 13 C -0.139 4.139 14 C -0.098 4.098 15 H 0.144 0.856 16 C 0.309 3.691 17 O -0.414 6.414 18 O -0.272 6.272 19 C 0.072 3.928 20 C -0.237 4.237 21 C -0.196 4.196 22 C -0.238 4.238 23 C -0.133 4.133 24 C -0.152 4.152 25 S 0.365 5.635 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.245 0.755 31 H -0.232 1.232 32 H -0.225 1.225 33 H 0.255 0.745 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.108 0.892 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.895 -3.677 -0.326 4.149 hybrid contribution -0.060 0.491 -0.529 0.724 sum 1.836 -3.186 -0.856 3.775 Atomic orbital electron populations 1.20355 0.85832 1.04166 1.03105 1.25393 1.01989 0.93081 1.16258 1.20195 0.86752 0.97658 1.03184 1.24493 0.98099 0.95512 0.96410 1.86419 1.34968 1.91776 1.21507 0.92886 0.74141 0.72987 0.89793 1.65900 1.17628 1.17542 1.28588 1.23480 0.92776 0.91379 0.98194 1.44147 1.01146 1.07538 1.79450 1.21289 0.99147 0.78046 0.96965 0.90094 1.22005 1.03215 0.95154 0.96493 1.21424 0.93977 0.96176 1.02340 1.21260 1.01383 0.86660 1.00493 0.85586 1.24086 0.72159 0.91496 0.81367 1.90597 1.45743 1.70855 1.34213 1.86554 1.81372 1.24251 1.35071 1.22402 0.95582 0.76412 0.98356 1.22457 0.98370 1.02141 1.00765 1.21879 1.03641 1.01555 0.92542 1.22459 0.95434 1.03978 1.01910 1.21329 1.03647 0.94766 0.93572 1.21711 0.94907 0.95815 1.02756 1.83900 0.95933 1.09915 1.73790 0.91546 0.91185 0.87976 0.86925 0.75481 1.23204 1.22518 0.74482 0.91484 0.89881 0.89621 0.91249 0.91702 0.89774 0.91762 0.91262 0.88885 0.91215 0.91742 0.89742 0.91756 0.90389 0.91328 0.89174 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.03 9.97 71.24 0.71 0.68 16 2 C -0.24 -0.82 6.49 24.57 0.16 -0.66 16 3 C 0.05 0.25 6.00 41.41 0.25 0.50 16 4 C -0.03 -0.09 2.74 71.24 0.20 0.10 16 5 O -0.54 -0.12 10.21 -148.98 -1.52 -1.65 16 6 Si 0.79 2.69 31.88 68.60 2.19 4.88 16 7 N -0.57 -3.47 8.61 -189.86 -1.64 -5.10 16 8 C 0.31 0.84 8.22 179.32 1.47 2.32 16 9 N -0.68 1.68 5.23 -330.40 -1.73 -0.05 16 10 C 0.15 -0.85 2.40 44.99 0.11 -0.74 16 11 H 0.08 -0.37 7.26 -2.39 -0.02 -0.38 16 12 C -0.13 0.76 5.51 30.59 0.17 0.92 16 13 C -0.10 0.55 5.13 30.59 0.16 0.71 16 14 C -0.08 0.34 2.63 -11.55 -0.03 0.31 16 15 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 16 C 0.46 0.92 6.57 71.23 0.47 1.38 16 17 O -0.52 -3.62 11.49 21.95 0.25 -3.37 16 18 O -0.36 -0.80 9.79 -51.41 -0.50 -1.31 16 19 C 0.11 0.09 1.13 -10.79 -0.01 0.08 16 20 C -0.18 -0.20 8.37 71.98 0.60 0.41 16 21 C -0.14 0.42 8.85 71.98 0.64 1.06 16 22 C -0.18 -0.21 8.37 71.98 0.60 0.39 16 23 C -0.09 0.47 4.49 30.59 0.14 0.60 16 24 C -0.11 0.90 5.39 30.60 0.16 1.06 16 25 S 0.12 0.14 21.67 -56.49 -1.22 -1.08 16 26 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.10 0.00 5.67 -2.39 -0.01 -0.01 16 29 H 0.11 0.41 7.96 -2.39 -0.02 0.39 16 30 H 0.40 -2.71 8.70 -74.05 -0.64 -3.36 16 31 H -0.30 -3.44 7.11 99.48 0.71 -2.73 16 32 H -0.30 -2.52 7.11 99.48 0.71 -1.82 16 33 H 0.42 -1.65 8.73 -92.71 -0.81 -2.45 16 34 H 0.07 -0.24 8.02 -2.39 -0.02 -0.26 16 35 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.09 -0.44 8.11 -2.38 -0.02 -0.46 16 37 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.06 0.35 5.89 -2.39 -0.01 0.33 16 41 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.06 0.35 5.89 -2.39 -0.01 0.33 16 45 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.08 -0.27 8.10 -2.38 -0.02 -0.29 16 48 H 0.07 -0.18 8.10 -2.39 -0.02 -0.20 16 49 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 50 H 0.09 -0.68 8.14 -2.38 -0.02 -0.70 16 Total: 0.00 -15.45 401.77 1.15 -14.30 By element: Atomic # 1 Polarization: -15.30 SS G_CDS: -0.47 Total: -15.76 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.79 Total: 9.14 kcal Atomic # 7 Polarization: -1.79 SS G_CDS: -3.36 Total: -5.15 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -1.77 Total: -6.32 kcal Atomic # 14 Polarization: 2.69 SS G_CDS: 2.19 Total: 4.88 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.22 Total: -1.08 kcal Total: -15.45 1.15 -14.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17607844_15704122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.350 kcal (2) G-P(sol) polarization free energy of solvation -15.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds