Wall clock time and date at job start Mon Mar 8 2021 08:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46801 * 2 1 4 4 C 1.53004 * 109.47016 * 239.99972 * 2 1 3 5 5 O 1.45201 * 109.46834 * 120.00063 * 2 1 3 6 6 C 1.34231 * 117.00162 * 60.00381 * 5 2 1 7 7 O 1.20820 * 119.99883 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99853 * 179.97438 * 6 5 2 9 9 H 1.08997 * 109.47185 * 59.99301 * 8 6 5 10 10 C 1.53001 * 109.47049 * 180.02562 * 8 6 5 11 11 C 1.53000 * 109.47102 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47024 * 299.99842 * 11 10 8 13 13 H 1.08999 * 109.47291 * 299.99949 * 12 11 10 14 14 N 1.46506 * 109.47330 * 180.02562 * 12 11 10 15 15 C 1.39143 * 120.00012 * 154.99609 * 14 12 11 16 16 N 1.32335 * 119.72070 * 0.02562 * 15 14 12 17 17 C 1.32002 * 121.64741 * 180.02562 * 16 15 14 18 18 C 1.37985 * 120.89974 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.32643 * 179.72950 * 18 17 16 20 20 O 1.42902 * 109.47231 * 120.00081 * 19 18 17 21 21 Si 1.86307 * 109.47059 * 359.97438 * 19 18 17 22 22 C 1.38898 * 119.35014 * 0.02562 * 18 17 16 23 23 C 1.38445 * 118.48516 * 359.97438 * 22 18 17 24 24 F 1.35098 * 120.47695 * 180.02562 * 23 22 18 25 25 C 1.53002 * 109.47374 * 59.99927 * 12 11 10 26 26 C 1.53000 * 109.47105 * 300.00024 * 25 12 11 27 27 H 1.08991 * 109.47225 * 299.99833 * 1 2 3 28 28 H 1.09004 * 109.47077 * 60.00377 * 1 2 3 29 29 H 1.08999 * 109.46663 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46842 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47520 * 299.99715 * 3 2 1 32 32 H 1.09004 * 109.47311 * 59.99975 * 3 2 1 33 33 H 1.09000 * 109.47149 * 299.99945 * 4 2 1 34 34 H 1.09003 * 109.46753 * 60.00042 * 4 2 1 35 35 H 1.09000 * 109.47060 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.47168 * 59.99207 * 10 8 6 37 37 H 1.09000 * 109.46422 * 299.99643 * 10 8 6 38 38 H 1.08997 * 109.47194 * 179.97438 * 11 10 8 39 39 H 1.09005 * 109.46949 * 59.99483 * 11 10 8 40 40 H 0.97004 * 119.99343 * 335.00304 * 14 12 11 41 41 H 1.08000 * 119.55405 * 180.02562 * 17 16 15 42 42 H 1.09003 * 109.46985 * 240.00201 * 19 18 17 43 43 H 0.96698 * 113.99661 * 299.99506 * 20 19 18 44 44 H 1.48502 * 109.99461 * 58.68295 * 21 19 18 45 45 H 1.48498 * 109.99804 * 180.02562 * 21 19 18 46 46 H 1.07998 * 120.76355 * 179.97438 * 22 18 17 47 47 H 1.08991 * 109.47087 * 60.00053 * 25 12 11 48 48 H 1.09004 * 109.47190 * 179.97438 * 25 12 11 49 49 H 1.08999 * 109.47045 * 299.99662 * 26 25 12 50 50 H 1.08997 * 109.47194 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9685 1.3378 7 8 0.9561 -2.5025 0.5082 8 6 2.1183 -2.7437 2.5436 9 1 1.7549 -2.2588 3.4496 10 6 1.5717 -4.1711 2.4739 11 6 2.0443 -4.9584 3.6978 12 6 3.5735 -4.9984 3.7191 13 1 3.9370 -5.4829 2.8129 14 7 4.0261 -5.7528 4.8906 15 6 5.2721 -6.3720 4.8807 16 7 6.0441 -6.2754 3.8102 17 6 7.2325 -6.8478 3.7594 18 6 7.7162 -7.5727 4.8292 19 6 9.0722 -8.2260 4.7550 20 8 9.9092 -7.7052 5.7895 21 14 9.8419 -7.8723 3.0956 22 6 6.9384 -7.6995 5.9730 23 6 5.6963 -7.0885 5.9980 24 9 4.9069 -7.1854 7.0900 25 6 4.1202 -3.5711 3.7887 26 6 3.6476 -2.7837 2.5649 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 1.9355 -4.6556 1.5679 37 1 0.4822 -4.1425 2.4583 38 1 1.6545 -5.9751 3.6484 39 1 1.6808 -4.4739 4.6040 40 1 3.4569 -5.8207 5.6732 41 1 7.8348 -6.7469 2.8686 42 1 8.9641 -9.3031 4.8827 43 1 10.0496 -6.7499 5.7383 44 1 9.9654 -6.4060 2.8953 45 1 11.1794 -8.5117 3.0095 46 1 7.2943 -8.2619 6.8235 47 1 3.7567 -3.0866 4.6949 48 1 5.2097 -3.5996 3.8044 49 1 4.0111 -3.2682 1.6587 50 1 4.0374 -1.7670 2.6142 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17607844_17656566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:20 Heat of formation + Delta-G solvation = -132.262779 kcal Electronic energy + Delta-G solvation = -31997.716059 eV Core-core repulsion = 27519.613348 eV Total energy + Delta-G solvation = -4478.102711 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.86024 -42.00171 -41.44212 -39.86565 -38.23450 -37.76563 -36.05818 -34.98242 -33.28523 -32.28514 -31.90049 -30.19993 -28.35969 -28.35092 -26.67070 -25.54945 -24.42584 -23.82103 -22.98534 -22.28256 -21.17212 -20.43419 -19.31679 -18.54790 -18.33551 -18.16424 -17.65298 -17.48031 -17.09320 -16.91323 -16.48377 -16.18771 -15.98421 -15.68487 -15.48884 -15.45055 -15.33601 -14.90788 -14.72282 -14.51084 -14.33850 -14.27542 -13.94557 -13.67567 -13.47957 -13.42601 -13.32069 -13.14984 -12.92391 -12.86947 -12.76229 -12.62450 -12.57723 -12.32586 -12.26289 -12.06937 -12.02196 -11.85255 -11.45692 -11.32999 -11.14542 -10.80535 -10.76584 -10.62371 -10.52286 -8.77183 -5.01646 -0.06257 0.12708 1.21336 1.27878 1.53850 1.68019 1.91977 1.94494 2.55659 3.04103 3.24518 3.33414 3.45966 3.52105 3.55287 3.57706 3.73644 3.78457 3.83573 3.90357 3.93835 3.98299 4.02122 4.12802 4.22079 4.28439 4.34683 4.43684 4.45334 4.53444 4.58645 4.63455 4.66513 4.72227 4.74408 4.76715 4.85782 4.86878 4.90550 4.94475 4.97485 5.02377 5.06330 5.06457 5.17790 5.23262 5.28497 5.30853 5.41914 5.62342 5.95293 6.17218 6.34651 6.89443 6.95816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.350 6.350 6 C 0.468 3.532 7 O -0.501 6.501 8 C -0.083 4.083 9 H 0.108 0.892 10 C -0.098 4.098 11 C -0.128 4.128 12 C 0.154 3.846 13 H 0.096 0.904 14 N -0.713 5.713 15 C 0.392 3.608 16 N -0.511 5.511 17 C 0.148 3.852 18 C -0.209 4.209 19 C -0.061 4.061 20 O -0.530 6.530 21 Si 0.681 3.319 22 C -0.038 4.038 23 C -0.021 4.021 24 F -0.134 7.134 25 C -0.127 4.127 26 C -0.106 4.106 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.412 0.588 41 H 0.163 0.837 42 H 0.120 0.880 43 H 0.376 0.624 44 H -0.256 1.256 45 H -0.254 1.254 46 H 0.149 0.851 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 1.157 -1.196 1.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.267 6.267 6 C 0.311 3.689 7 O -0.388 6.388 8 C -0.102 4.102 9 H 0.126 0.874 10 C -0.136 4.136 11 C -0.166 4.166 12 C 0.050 3.950 13 H 0.114 0.886 14 N -0.345 5.345 15 C 0.154 3.846 16 N -0.228 5.228 17 C -0.009 4.009 18 C -0.214 4.214 19 C -0.172 4.172 20 O -0.336 6.336 21 Si 0.582 3.418 22 C -0.064 4.064 23 C -0.048 4.048 24 F -0.113 7.113 25 C -0.166 4.166 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.249 0.751 41 H 0.179 0.821 42 H 0.138 0.862 43 H 0.224 0.776 44 H -0.181 1.181 45 H -0.179 1.179 46 H 0.167 0.833 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.319 1.344 -2.566 2.914 hybrid contribution 0.066 0.379 2.077 2.112 sum -0.253 1.723 -0.490 1.809 Atomic orbital electron populations 1.22496 0.93936 1.04715 1.02925 1.22220 0.94436 0.92344 0.82937 1.21868 1.02309 0.92495 1.03232 1.22493 1.01745 1.03106 0.96698 1.86551 1.69686 1.25289 1.45199 1.23593 0.77212 0.80661 0.87416 1.90592 1.35124 1.69979 1.43138 1.21193 0.98222 0.95735 0.95051 0.87362 1.21361 1.01574 0.92062 0.98609 1.21831 0.94266 1.01504 0.98968 1.21035 0.93500 0.91493 0.88993 0.88647 1.44678 1.15100 1.55373 1.19393 1.18434 0.87729 0.89842 0.88598 1.67316 1.06314 1.24690 1.24453 1.22342 0.90788 0.90777 0.96994 1.20860 0.99489 1.05413 0.95660 1.24826 0.88457 1.01534 1.02361 1.86611 1.69285 1.27767 1.49966 0.95130 0.84081 0.82479 0.80107 1.21276 0.90602 0.95686 0.98837 1.18011 0.92839 1.08265 0.85644 1.91492 1.73089 1.95146 1.51543 1.21940 1.01840 0.94868 0.97923 1.21475 0.91774 1.01843 0.99351 0.91982 0.90888 0.89834 0.91392 0.90200 0.91428 0.89817 0.90914 0.91925 0.90371 0.90262 0.90395 0.91047 0.75137 0.82050 0.86218 0.77594 1.18068 1.17860 0.83345 0.91532 0.90631 0.90875 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.15 8.37 37.16 0.31 0.16 16 2 C 0.12 0.10 1.13 -90.62 -0.10 0.00 16 3 C -0.14 0.12 8.85 37.16 0.33 0.45 16 4 C -0.18 -0.15 8.37 37.16 0.31 0.16 16 5 O -0.35 -0.57 9.79 -39.26 -0.38 -0.96 16 6 C 0.47 0.69 6.56 36.01 0.24 0.93 16 7 O -0.50 -1.78 11.48 -18.75 -0.22 -1.99 16 8 C -0.08 0.09 2.63 -91.77 -0.24 -0.15 16 9 H 0.11 -0.23 8.14 -51.93 -0.42 -0.66 16 10 C -0.10 0.13 4.49 -26.73 -0.12 0.01 16 11 C -0.13 0.31 5.39 -26.73 -0.14 0.16 16 12 C 0.15 -0.21 2.47 -67.93 -0.17 -0.38 16 13 H 0.10 -0.01 7.54 -51.93 -0.39 -0.40 16 14 N -0.71 0.44 5.23 -53.85 -0.28 0.15 16 15 C 0.39 0.41 7.47 -154.86 -1.16 -0.75 16 16 N -0.51 -0.54 9.20 -12.37 -0.11 -0.65 16 17 C 0.15 -0.06 9.84 -17.57 -0.17 -0.23 16 18 C -0.21 0.11 5.39 -104.47 -0.56 -0.45 16 19 C -0.06 0.08 2.83 36.01 0.10 0.18 16 20 O -0.53 -0.17 12.78 -35.23 -0.45 -0.62 16 21 Si 0.68 -1.35 29.82 -169.99 -5.07 -6.42 16 22 C -0.04 -0.02 9.76 -39.26 -0.38 -0.40 16 23 C -0.02 -0.03 7.35 -39.09 -0.29 -0.31 16 24 F -0.13 -0.26 16.65 2.25 0.04 -0.22 16 25 C -0.13 0.18 5.51 -26.73 -0.15 0.03 16 26 C -0.11 0.16 5.13 -26.73 -0.14 0.02 16 27 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 29 H 0.08 0.22 5.89 -51.93 -0.31 -0.09 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 31 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 32 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.08 0.21 5.89 -51.93 -0.31 -0.09 16 34 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 35 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.08 -0.03 8.10 -51.93 -0.42 -0.45 16 37 H 0.08 -0.07 8.10 -51.93 -0.42 -0.49 16 38 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 39 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 40 H 0.41 -0.66 8.07 -40.82 -0.33 -0.99 16 41 H 0.16 -0.41 4.88 -52.49 -0.26 -0.66 16 42 H 0.12 -0.24 7.96 -51.93 -0.41 -0.65 16 43 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 44 H -0.26 0.04 7.11 56.52 0.40 0.45 16 45 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 46 H 0.15 -0.05 8.06 -52.49 -0.42 -0.47 16 47 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 48 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 49 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 50 H 0.08 -0.11 8.11 -51.93 -0.42 -0.53 16 LS Contribution 397.87 15.07 6.00 6.00 Total: 0.00 -5.93 397.87 -10.80 -16.73 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: -7.98 Total: -11.44 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.33 Total: -0.57 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -0.40 Total: -0.50 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: -1.05 Total: -3.57 kcal Atomic # 9 Polarization: -0.26 SS G_CDS: 0.04 Total: -0.22 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -5.07 Total: -6.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -5.93 -10.80 -16.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17607844_17656566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.532 kcal (2) G-P(sol) polarization free energy of solvation -5.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds