Wall clock time and date at job start Mon Mar 8 2021 08:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46801 * 2 1 4 4 C 1.53004 * 109.47016 * 239.99972 * 2 1 3 5 5 O 1.45201 * 109.46834 * 120.00063 * 2 1 3 6 6 C 1.34231 * 117.00162 * 60.00381 * 5 2 1 7 7 O 1.20820 * 119.99883 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99853 * 179.97438 * 6 5 2 9 9 H 1.08997 * 109.47185 * 59.99301 * 8 6 5 10 10 C 1.53001 * 109.47049 * 180.02562 * 8 6 5 11 11 C 1.53000 * 109.47102 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47024 * 299.99842 * 11 10 8 13 13 H 1.08999 * 109.47291 * 299.99949 * 12 11 10 14 14 N 1.46506 * 109.47330 * 180.02562 * 12 11 10 15 15 C 1.39143 * 120.00012 * 154.99609 * 14 12 11 16 16 N 1.32335 * 119.72070 * 0.02562 * 15 14 12 17 17 C 1.32002 * 121.64741 * 180.02562 * 16 15 14 18 18 C 1.37985 * 120.89974 * 359.97438 * 17 16 15 19 19 C 1.50704 * 120.32643 * 179.72950 * 18 17 16 20 20 O 1.42902 * 109.47231 * 120.00081 * 19 18 17 21 21 Si 1.86307 * 109.47059 * 359.97438 * 19 18 17 22 22 C 1.38898 * 119.35014 * 0.02562 * 18 17 16 23 23 C 1.38445 * 118.48516 * 359.97438 * 22 18 17 24 24 F 1.35098 * 120.47695 * 180.02562 * 23 22 18 25 25 C 1.53002 * 109.47374 * 59.99927 * 12 11 10 26 26 C 1.53000 * 109.47105 * 300.00024 * 25 12 11 27 27 H 1.08991 * 109.47225 * 299.99833 * 1 2 3 28 28 H 1.09004 * 109.47077 * 60.00377 * 1 2 3 29 29 H 1.08999 * 109.46663 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46842 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47520 * 299.99715 * 3 2 1 32 32 H 1.09004 * 109.47311 * 59.99975 * 3 2 1 33 33 H 1.09000 * 109.47149 * 299.99945 * 4 2 1 34 34 H 1.09003 * 109.46753 * 60.00042 * 4 2 1 35 35 H 1.09000 * 109.47060 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.47168 * 59.99207 * 10 8 6 37 37 H 1.09000 * 109.46422 * 299.99643 * 10 8 6 38 38 H 1.08997 * 109.47194 * 179.97438 * 11 10 8 39 39 H 1.09005 * 109.46949 * 59.99483 * 11 10 8 40 40 H 0.97004 * 119.99343 * 335.00304 * 14 12 11 41 41 H 1.08000 * 119.55405 * 180.02562 * 17 16 15 42 42 H 1.09003 * 109.46985 * 240.00201 * 19 18 17 43 43 H 0.96698 * 113.99661 * 299.99506 * 20 19 18 44 44 H 1.48502 * 109.99461 * 58.68295 * 21 19 18 45 45 H 1.48498 * 109.99804 * 180.02562 * 21 19 18 46 46 H 1.07998 * 120.76355 * 179.97438 * 22 18 17 47 47 H 1.08991 * 109.47087 * 60.00053 * 25 12 11 48 48 H 1.09004 * 109.47190 * 179.97438 * 25 12 11 49 49 H 1.08999 * 109.47045 * 299.99662 * 26 25 12 50 50 H 1.08997 * 109.47194 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9685 1.3378 7 8 0.9561 -2.5025 0.5082 8 6 2.1183 -2.7437 2.5436 9 1 1.7549 -2.2588 3.4496 10 6 1.5717 -4.1711 2.4739 11 6 2.0443 -4.9584 3.6978 12 6 3.5735 -4.9984 3.7191 13 1 3.9370 -5.4829 2.8129 14 7 4.0261 -5.7528 4.8906 15 6 5.2721 -6.3720 4.8807 16 7 6.0441 -6.2754 3.8102 17 6 7.2325 -6.8478 3.7594 18 6 7.7162 -7.5727 4.8292 19 6 9.0722 -8.2260 4.7550 20 8 9.9092 -7.7052 5.7895 21 14 9.8419 -7.8723 3.0956 22 6 6.9384 -7.6995 5.9730 23 6 5.6963 -7.0885 5.9980 24 9 4.9069 -7.1854 7.0900 25 6 4.1202 -3.5711 3.7887 26 6 3.6476 -2.7837 2.5649 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 1.9355 -4.6556 1.5679 37 1 0.4822 -4.1425 2.4583 38 1 1.6545 -5.9751 3.6484 39 1 1.6808 -4.4739 4.6040 40 1 3.4569 -5.8207 5.6732 41 1 7.8348 -6.7469 2.8686 42 1 8.9641 -9.3031 4.8827 43 1 10.0496 -6.7499 5.7383 44 1 9.9654 -6.4060 2.8953 45 1 11.1794 -8.5117 3.0095 46 1 7.2943 -8.2619 6.8235 47 1 3.7567 -3.0866 4.6949 48 1 5.2097 -3.5996 3.8044 49 1 4.0111 -3.2682 1.6587 50 1 4.0374 -1.7670 2.6142 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17607844_17656566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:18 Heat of formation + Delta-G solvation = -125.742813 kcal Electronic energy + Delta-G solvation = -31997.433332 eV Core-core repulsion = 27519.613348 eV Total energy + Delta-G solvation = -4477.819984 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -49.93786 -42.07508 -41.43809 -39.81848 -38.24679 -37.81509 -36.04831 -35.03019 -33.28503 -32.25762 -31.81363 -30.16388 -28.41706 -28.33494 -26.63566 -25.54124 -24.42875 -23.73673 -22.97815 -22.26167 -21.10819 -20.49664 -19.29981 -18.52729 -18.34366 -18.21872 -17.66175 -17.53630 -17.15058 -16.96778 -16.46856 -16.14528 -15.94329 -15.64757 -15.51228 -15.46812 -15.30649 -14.90956 -14.73136 -14.52455 -14.31485 -14.26151 -13.94583 -13.62975 -13.43116 -13.42682 -13.23066 -13.15897 -12.96469 -12.89466 -12.72608 -12.60331 -12.57346 -12.32719 -12.18232 -12.08370 -12.02757 -11.78960 -11.42481 -11.37364 -11.09246 -10.89398 -10.73246 -10.62762 -10.51223 -8.75119 -4.88760 -0.06695 0.12414 1.18344 1.32229 1.63254 1.66467 1.98917 1.99927 2.55570 3.03882 3.28398 3.43408 3.49064 3.59490 3.61183 3.63598 3.71245 3.76086 3.86825 3.92131 3.98338 4.00624 4.11058 4.19695 4.33381 4.36988 4.44534 4.45625 4.54386 4.55019 4.56148 4.70418 4.72285 4.75922 4.77561 4.79671 4.83975 4.88861 4.95820 5.00133 5.05673 5.08955 5.11270 5.14883 5.21295 5.25104 5.26916 5.30982 5.46209 5.56826 5.99838 6.22012 6.50775 6.79986 6.98434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.355 6.355 6 C 0.465 3.535 7 O -0.525 6.525 8 C -0.078 4.078 9 H 0.125 0.875 10 C -0.093 4.093 11 C -0.118 4.118 12 C 0.158 3.842 13 H 0.083 0.917 14 N -0.709 5.709 15 C 0.385 3.615 16 N -0.524 5.524 17 C 0.147 3.853 18 C -0.204 4.204 19 C -0.067 4.067 20 O -0.549 6.549 21 Si 0.763 3.237 22 C -0.041 4.041 23 C -0.038 4.038 24 F -0.141 7.141 25 C -0.118 4.118 26 C -0.099 4.099 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.416 0.584 41 H 0.181 0.819 42 H 0.129 0.871 43 H 0.386 0.614 44 H -0.276 1.276 45 H -0.301 1.301 46 H 0.153 0.847 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 1.701 -1.087 2.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.310 3.690 7 O -0.414 6.414 8 C -0.097 4.097 9 H 0.143 0.857 10 C -0.131 4.131 11 C -0.156 4.156 12 C 0.053 3.947 13 H 0.101 0.899 14 N -0.342 5.342 15 C 0.146 3.854 16 N -0.242 5.242 17 C -0.010 4.010 18 C -0.210 4.210 19 C -0.176 4.176 20 O -0.357 6.357 21 Si 0.668 3.332 22 C -0.067 4.067 23 C -0.064 4.064 24 F -0.120 7.120 25 C -0.157 4.157 26 C -0.137 4.137 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.254 0.746 41 H 0.198 0.802 42 H 0.146 0.854 43 H 0.236 0.764 44 H -0.203 1.203 45 H -0.229 1.229 46 H 0.171 0.829 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.376 1.900 -2.442 3.117 hybrid contribution 0.125 0.211 2.017 2.032 sum -0.251 2.111 -0.425 2.168 Atomic orbital electron populations 1.22461 0.94066 1.03597 1.03648 1.22413 0.94476 0.93248 0.82674 1.21879 1.02402 0.91287 1.04015 1.22458 1.01812 1.02083 0.97391 1.86555 1.69708 1.25409 1.45590 1.24081 0.76639 0.80617 0.87699 1.90588 1.36298 1.70390 1.44163 1.21249 0.98344 0.95558 0.94530 0.85746 1.21298 1.01238 0.91981 0.98609 1.21751 0.93337 1.01576 0.98956 1.20995 0.94107 0.91290 0.88278 0.89938 1.44709 1.14706 1.55053 1.19700 1.18565 0.88236 0.89999 0.88578 1.67367 1.06918 1.25279 1.24600 1.22678 0.90543 0.90114 0.97651 1.20888 0.99555 1.05208 0.95302 1.25024 0.87956 1.02036 1.02612 1.86583 1.69513 1.28870 1.50712 0.94187 0.80970 0.79621 0.78468 1.21417 0.90443 0.95509 0.99337 1.18141 0.93295 1.09253 0.85732 1.91466 1.73339 1.95296 1.51885 1.21846 1.00988 0.94773 0.98121 1.21396 0.91415 1.01814 0.99070 0.91739 0.89679 0.91801 0.91234 0.88821 0.91253 0.91814 0.89694 0.91728 0.91588 0.90659 0.90232 0.89654 0.74595 0.80212 0.85361 0.76424 1.20267 1.22934 0.82917 0.90771 0.91852 0.91593 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.36 8.37 71.98 0.60 0.24 16 2 C 0.11 0.20 1.13 -10.79 -0.01 0.19 16 3 C -0.14 0.32 8.85 71.98 0.64 0.96 16 4 C -0.18 -0.38 8.37 71.98 0.60 0.23 16 5 O -0.36 -1.29 9.79 -51.42 -0.50 -1.79 16 6 C 0.47 1.72 6.56 71.24 0.47 2.19 16 7 O -0.53 -4.46 11.48 21.98 0.25 -4.21 16 8 C -0.08 0.16 2.63 -11.54 -0.03 0.13 16 9 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 10 C -0.09 0.22 4.49 30.59 0.14 0.35 16 11 C -0.12 0.60 5.39 30.59 0.16 0.77 16 12 C 0.16 -0.41 2.47 44.99 0.11 -0.30 16 13 H 0.08 0.03 7.54 -2.39 -0.02 0.02 16 14 N -0.71 0.79 5.23 -324.28 -1.69 -0.90 16 15 C 0.38 0.91 7.47 133.09 0.99 1.90 16 16 N -0.52 -1.18 9.20 -193.04 -1.78 -2.96 16 17 C 0.15 -0.16 9.84 84.61 0.83 0.67 16 18 C -0.20 0.27 5.39 -19.76 -0.11 0.17 16 19 C -0.07 0.19 2.83 71.24 0.20 0.40 16 20 O -0.55 -0.26 12.78 -148.98 -1.90 -2.17 16 21 Si 0.76 -3.21 29.82 68.60 2.05 -1.17 16 22 C -0.04 -0.04 9.76 22.48 0.22 0.18 16 23 C -0.04 -0.11 7.35 22.59 0.17 0.05 16 24 F -0.14 -0.62 16.65 44.97 0.75 0.13 16 25 C -0.12 0.35 5.51 30.60 0.17 0.52 16 26 C -0.10 0.27 5.13 30.60 0.16 0.43 16 27 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.06 0.41 5.89 -2.39 -0.01 0.39 16 30 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 33 H 0.06 0.42 5.89 -2.39 -0.01 0.40 16 34 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.07 0.02 8.10 -2.39 -0.02 0.00 16 37 H 0.07 -0.09 8.10 -2.39 -0.02 -0.11 16 38 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.08 -0.63 8.14 -2.38 -0.02 -0.65 16 40 H 0.42 -1.37 8.07 -92.71 -0.75 -2.12 16 41 H 0.18 -1.05 4.88 -2.91 -0.01 -1.07 16 42 H 0.13 -0.59 7.96 -2.39 -0.02 -0.61 16 43 H 0.39 -1.91 8.70 -74.06 -0.64 -2.55 16 44 H -0.28 0.22 7.11 99.48 0.71 0.93 16 45 H -0.30 -1.18 7.11 99.48 0.71 -0.47 16 46 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 47 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 48 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 49 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 50 H 0.08 -0.22 8.11 -2.39 -0.02 -0.24 16 Total: 0.00 -14.69 397.87 2.09 -12.60 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -0.39 Total: -8.59 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.31 Total: 9.07 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -3.47 Total: -3.86 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -2.16 Total: -8.17 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.75 Total: 0.13 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.05 Total: -1.17 kcal Total: -14.69 2.09 -12.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17607844_17656566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.146 kcal (2) G-P(sol) polarization free energy of solvation -14.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds